View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_high_32 (Length: 334)
Name: NF14649_high_32
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 11544796 - 11545102
Alignment:
| Q |
15 |
agtttattcattccatctagattttttgatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544796 |
agtttattcattccatctagattttttgatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatg |
11544895 |
T |
|
| Q |
115 |
ctgagattccacttgagtttcttcctcctaaacttgttacttttggaaagtcttgtgactatagttcaaaatctaagaagggagatgatattgttgatgg |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
11544896 |
ctgagattccacttgagtttcttcatcctaaacttgttacttttggaaagccttgtgactatagttcaaaagct---aagggagatgatattgttgatgg |
11544992 |
T |
|
| Q |
215 |
tgatgttgaagatggcttgaattctgagaaaaactctgttgatattgttaccggcactgataattttgttgaagatggtttgaatgctgagaaaaatatg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11544993 |
tgatgttgaagatggcttgaattctgagaaaaactctgttgatattgttaccggctctgataattctgttgaagatggtttgaatgctgagaaaaatatg |
11545092 |
T |
|
| Q |
315 |
gctgatgatg |
324 |
Q |
| |
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|||| ||||| |
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| T |
11545093 |
gctgttgatg |
11545102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 11563732 - 11563449
Alignment:
| Q |
38 |
ttttgatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatgctgagattccacttgagtttctt |
137 |
Q |
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| T |
11563732 |
ttttgatgccggtgttaccacacgttatgcaacatggtggaagagaagtgcaggttcatcaacatgtacagctcatgctgagattccacttgagtttctt |
11563633 |
T |
|
| Q |
138 |
cctcctaaacttgttacttttggaaagtcttgtgactatagttcaaaatctaagaagggagatgatattgttgatggtgatgttgaagatggcttgaatt |
237 |
Q |
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| T |
11563632 |
catcctaaacttgttacttttggaaagccttgtgactatagttcaaaagct---aagggagatgatattgttgatggtgatgttgaagatggcttgaatt |
11563536 |
T |
|
| Q |
238 |
ctgagaaaaactctgttgatattgttaccggcactgataattttgttgaagatggtttgaatgctgagaaaaatatggctgatgatg |
324 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11563535 |
ctgagaaaaactctgttgatattgttaccggctctgataattctgttgaagatggtttgaatgctgagaaaaatatggctgttgatg |
11563449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 39191368 - 39191113
Alignment:
| Q |
15 |
agtttattcattccatctagattttttgatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatg |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
39191368 |
agtttatacattccatctagattttttgatgccggtgttaccacacgttatgcaacgtggttgaagagaagtgcatgttcatcaacatgtacagatcatg |
39191269 |
T |
|
| Q |
115 |
ctgagattccacttgagtttcttcctcctaaact---------tgttacttttggaaagtcttgtgactatagttcaaaatctaagaagggagatgatat |
205 |
Q |
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||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39191268 |
ctgagattccacttgagtttcctcctcctaatcttgttggcactgttacttttggaaagtcttgtgactatagttcaaaagctaagaagggagatgatat |
39191169 |
T |
|
| Q |
206 |
tgttgatggtgatgttgaagatggcttgaattctgagaaaaactctgttgatattg |
261 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39191168 |
tgctgatggtggtgttgaagatggcttgaattctgagaaaaactctgttcatattg |
39191113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 134 - 305
Target Start/End: Original strand, 16799068 - 16799239
Alignment:
| Q |
134 |
tcttcctcctaaacttgttacttttggaaagtcttgtgactatagttcaaaatctaagaagggagatgatattgttgatggtgatgttgaagatggcttg |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16799068 |
tcttcctcctaaacttgttacttttggaaagtcttgtgactatagttcaaaagctaagtagggagatgatattgttgatggtgatgttgaagatggcttg |
16799167 |
T |
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| Q |
234 |
aattctgagaaaaactctgttgatattgttaccggcactgataattttgttgaagatggtttgaatgctgag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
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| T |
16799168 |
aattctgagaaaaactctgttgatattgttaccggctctaataattctgttgaagatggtttgaatgctgag |
16799239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 16793984 - 16794107
Alignment:
| Q |
15 |
agtttattcattccatctagattttttgatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatg |
114 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16793984 |
agtttattcattccatctacatttttttatgccggtgttaccacacgttatgcaacgtggtggaagagaagtgcaggttcatcaacatgtacagctcatg |
16794083 |
T |
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| Q |
115 |
ctgagattccacttgagtttcttc |
138 |
Q |
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|||||||||||||||||||||||| |
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| T |
16794084 |
ctgagattccacttgagtttcttc |
16794107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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