View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_high_33 (Length: 312)

Name: NF14649_high_33
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_high_33
NF14649_high_33
[»] chr3 (1 HSPs)
chr3 (17-308)||(40411739-40412030)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 40412030 - 40411739
Alignment:
Q  17 agatggcaagtatgaatctcttcccttagaaaatctaccaactgaacaggtagtaaacctagccaaagaagcatcattgaaagctatacaagaatgggga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40412030 agatggcaagtatgaatctcttcccttagaaaatctaccaactgaacaggtagtaaacctagccaaagaagcatcattgaaagctttacaagaatgggga 40411931  T
Q  117 caatccatatcagaaatcacacacctcatcttatgcacaacttcttgcttcggcagcgttcccggtccagatactcacctcgccagacttcttaatctca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40411930 caatccatatcagaaatcacacacctcatcttatgcacaacttcttgcttcggcagcgttcccggtccagatactcacctcgccagacttcttaatctca 40411831  T
Q  217 aaccaaccgttaacagactcatgatttttggtcacggttgccacgccggtggcaccatcctccgtatcgccaaagacatggctgagaataat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40411830 aaccaaccgttaacagactcatgatttttggtcacggttgccacgccggtggcaccatcctccgtatcgccaaagacatggctgagaataat 40411739  T

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