View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_high_36 (Length: 296)

Name: NF14649_high_36
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_high_36
NF14649_high_36
[»] chr3 (17 HSPs)
chr3 (86-289)||(20795295-20795498)
chr3 (86-289)||(30160446-30160649)
chr3 (108-238)||(5750601-5750733)
chr3 (108-238)||(5787560-5787692)
chr3 (119-237)||(37197829-37197946)
chr3 (119-238)||(6445165-6445282)
chr3 (119-237)||(20919268-20919385)
chr3 (119-237)||(20928230-20928347)
chr3 (179-291)||(37187502-37187612)
chr3 (253-287)||(2765973-2766007)
chr3 (193-287)||(9270699-9270792)
chr3 (253-287)||(50246546-50246580)
chr3 (106-171)||(2766088-2766153)
chr3 (40-72)||(10027340-10027372)
chr3 (40-72)||(42392259-42392291)
chr3 (40-73)||(36144377-36144410)
chr3 (44-72)||(22505412-22505440)
[»] chr6 (19 HSPs)
chr6 (46-289)||(21992555-21992799)
chr6 (114-238)||(33452320-33452444)
chr6 (114-238)||(13705495-13705617)
chr6 (114-186)||(15654083-15654155)
chr6 (114-186)||(15664036-15664108)
chr6 (119-237)||(4856915-4857034)
chr6 (119-238)||(30890054-30890175)
chr6 (119-287)||(11550248-11550417)
chr6 (192-289)||(4749520-4749617)
chr6 (114-287)||(27434709-27434881)
chr6 (184-230)||(15654187-15654233)
chr6 (190-230)||(15664142-15664182)
chr6 (253-289)||(33452249-33452285)
chr6 (40-71)||(4749243-4749274)
chr6 (253-287)||(32681527-32681561)
chr6 (40-69)||(27428653-27428682)
chr6 (119-147)||(1608073-1608101)
chr6 (257-289)||(13705427-13705459)
chr6 (40-72)||(15888574-15888606)
[»] scaffold0490 (1 HSPs)
scaffold0490 (40-289)||(9080-9330)
[»] chr1 (15 HSPs)
chr1 (103-289)||(19095344-19095530)
chr1 (168-289)||(8313968-8314088)
chr1 (108-287)||(45914958-45915138)
chr1 (114-287)||(46514368-46514540)
chr1 (119-188)||(8106928-8106997)
chr1 (119-188)||(8111574-8111643)
chr1 (119-171)||(15535296-15535348)
chr1 (108-287)||(22544110-22544288)
chr1 (191-237)||(3417383-3417429)
chr1 (39-73)||(41322437-41322471)
chr1 (119-188)||(8314029-8314098)
chr1 (40-73)||(16995447-16995480)
chr1 (253-287)||(15535181-15535215)
chr1 (44-73)||(40700108-40700137)
chr1 (253-289)||(11440957-11440993)
[»] chr8 (52 HSPs)
chr8 (114-238)||(15605962-15606086)
chr8 (114-238)||(15614315-15614439)
chr8 (114-238)||(15648131-15648255)
chr8 (119-238)||(10894547-10894666)
chr8 (114-238)||(15624343-15624467)
chr8 (119-233)||(15624165-15624279)
chr8 (114-232)||(15637492-15637610)
chr8 (119-233)||(15647953-15648067)
chr8 (114-238)||(15637302-15637426)
chr8 (114-232)||(15637676-15637794)
chr8 (114-233)||(15613808-15613928)
chr8 (114-238)||(15637119-15637243)
chr8 (119-238)||(16250411-16250529)
chr8 (114-233)||(15636942-15637060)
chr8 (119-225)||(20540820-20540926)
chr8 (122-233)||(15605455-15605567)
chr8 (114-238)||(15614133-15614256)
chr8 (86-188)||(38050219-38050321)
chr8 (114-207)||(15605628-15605721)
chr8 (114-238)||(15605780-15605903)
chr8 (114-207)||(15613981-15614073)
chr8 (167-238)||(15624526-15624597)
chr8 (114-243)||(10895864-10895992)
chr8 (165-238)||(15613469-15613541)
chr8 (135-289)||(287343-287496)
chr8 (114-173)||(15605343-15605402)
chr8 (167-238)||(15648314-15648385)
chr8 (165-238)||(15923611-15923684)
chr8 (165-238)||(15605117-15605188)
chr8 (119-236)||(25113397-25113514)
chr8 (114-173)||(15613696-15613755)
chr8 (119-238)||(17895021-17895138)
chr8 (196-238)||(4930230-4930272)
chr8 (108-287)||(18666790-18666969)
chr8 (119-188)||(23136464-23136533)
chr8 (193-233)||(15923951-15923991)
chr8 (119-289)||(27521102-27521272)
chr8 (114-173)||(15923839-15923898)
chr8 (108-284)||(8362304-8362480)
chr8 (191-236)||(12167179-12167224)
chr8 (191-236)||(12411607-12411652)
chr8 (119-171)||(35136706-35136758)
chr8 (119-209)||(772597-772688)
chr8 (114-173)||(15636830-15636889)
chr8 (38-73)||(19190675-19190710)
chr8 (108-171)||(23689219-23689282)
chr8 (114-287)||(45250949-45251121)
chr8 (191-236)||(16291992-16292037)
chr8 (253-288)||(4930305-4930340)
chr8 (253-287)||(23689104-23689138)
chr8 (120-237)||(23161056-23161172)
chr8 (119-148)||(25063975-25064004)
[»] scaffold0114 (1 HSPs)
scaffold0114 (119-238)||(34291-34410)
[»] chr4 (16 HSPs)
chr4 (114-238)||(37069683-37069805)
chr4 (119-235)||(17461926-17462041)
chr4 (119-289)||(24024-24193)
chr4 (174-289)||(13914684-13914798)
chr4 (196-238)||(13923288-13923330)
chr4 (114-287)||(18066676-18066848)
chr4 (119-287)||(35647971-35648138)
chr4 (193-243)||(14288140-14288190)
chr4 (253-289)||(37069615-37069651)
chr4 (253-288)||(13923218-13923253)
chr4 (40-71)||(55057980-55058011)
chr4 (253-287)||(10780389-10780423)
chr4 (253-287)||(10973998-10974032)
chr4 (38-72)||(13924614-13924648)
chr4 (40-69)||(17990085-17990114)
chr4 (40-69)||(18072875-18072904)
[»] chr5 (7 HSPs)
chr5 (119-238)||(501100-501220)
chr5 (119-238)||(36647960-36648079)
chr5 (108-287)||(27588612-27588791)
chr5 (119-188)||(9663066-9663135)
chr5 (191-289)||(19205849-19205946)
chr5 (191-236)||(29857767-29857812)
chr5 (253-289)||(501252-501288)
[»] chr2 (12 HSPs)
chr2 (114-208)||(11127769-11127864)
chr2 (146-289)||(45049526-45049668)
chr2 (108-287)||(21119845-21120024)
chr2 (109-171)||(20103500-20103562)
chr2 (191-236)||(5243259-5243304)
chr2 (40-72)||(5244826-5244858)
chr2 (255-287)||(24972140-24972172)
chr2 (108-160)||(24972272-24972324)
chr2 (119-171)||(41747366-41747418)
chr2 (253-287)||(20103644-20103678)
chr2 (146-184)||(31300006-31300044)
chr2 (45-73)||(14876037-14876065)
[»] scaffold0018 (1 HSPs)
scaffold0018 (123-289)||(67189-67354)
[»] chr7 (5 HSPs)
chr7 (106-287)||(7946432-7946613)
chr7 (120-237)||(29493987-29494104)
chr7 (253-287)||(29494118-29494152)
chr7 (195-236)||(30878825-30878866)
chr7 (45-73)||(48553313-48553341)
[»] scaffold0022 (1 HSPs)
scaffold0022 (119-289)||(101102-101272)
[»] scaffold0155 (2 HSPs)
scaffold0155 (108-237)||(26657-26786)
scaffold0155 (256-287)||(26805-26836)
[»] scaffold0003 (2 HSPs)
scaffold0003 (114-287)||(52482-52654)
scaffold0003 (40-69)||(58681-58710)
[»] scaffold0289 (1 HSPs)
scaffold0289 (114-287)||(22068-22239)
[»] scaffold0059 (2 HSPs)
scaffold0059 (119-237)||(67185-67302)
scaffold0059 (119-237)||(75290-75407)
[»] scaffold0191 (1 HSPs)
scaffold0191 (120-243)||(17020-17139)
[»] scaffold0061 (1 HSPs)
scaffold0061 (42-73)||(30978-31009)
[»] scaffold0017 (1 HSPs)
scaffold0017 (42-73)||(167783-167814)
[»] scaffold0200 (1 HSPs)
scaffold0200 (44-72)||(3119-3147)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 86 - 289
Target Start/End: Complemental strand, 20795498 - 20795295
Alignment:
Q  86 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20795498 aaagtacacgtggcaagcttatattctccatcccatttaatgttttcatatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 20795399  T
Q  186 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||    
T  20795398 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatgaatcatgatatgatttttttttctatatatagacaatttgtttttcattattttc 20795299  T
Q  286 atct 289  Q
    ||||    
T  20795298 atct 20795295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 86 - 289
Target Start/End: Original strand, 30160446 - 30160649
Alignment:
Q  86 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 185  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30160446 aaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 30160545  T
Q  186 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||    
T  30160546 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttc 30160645  T
Q  286 atct 289  Q
    ||||    
T  30160646 atct 30160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 5750733 - 5750601
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 206  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5750733 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5750634  T
Q  207 g-tttttcatgagccaatcaaaatggatcatga 238  Q
    | |||||||||||||||||||||||||||||||    
T  5750633 gctttttcatgagccaatcaaaatggatcatga 5750601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 5787692 - 5787560
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 206  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5787692 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5787593  T
Q  207 g-tttttcatgagccaatcaaaatggatcatga 238  Q
    | |||||||||||||||||||||||||||||||    
T  5787592 gctttttcatgagccaatcaaaatggatcatga 5787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 37197829 - 37197946
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| |||||  ||||||| ||    
T  37197829 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttagttttcatcag 37197927  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  37197928 ccaatcaaaattgatcatg 37197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 6445282 - 6445165
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  6445282 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 6445185  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||| ||||||||    
T  6445184 ccaatcaaaattgatcatga 6445165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 20919268 - 20919385
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20919268 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20919366  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  20919367 ccaatcaaaattgatcatg 20919385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 20928230 - 20928347
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20928230 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20928328  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  20928329 ccaatcaaaattgatcatg 20928347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 37187502 - 37187612
Alignment:
Q  179 ccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcat 278  Q
    ||||| ||||||| |||| ||||||||| ||||| |||||||||||||||| |||||||| ||||         ||||||||| |||||||| |||||||    
T  37187502 ccaatcaaaagag-atcacgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttttctatatataaacaatttg-ttttcat 37187599  T
Q  279 tattttcatctca 291  Q
    ||| |||||||||    
T  37187600 tatcttcatctca 37187612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 2766007 - 2765973
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||||||||||||||||||||||||||||    
T  2766007 ctatatatagacaatttgtttttcattattttcat 2765973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 9270792 - 9270699
Alignment:
Q  193 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||||||| |||||||| ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  9270792 atcatgactcatttatttttcattagccaattaaaattgatcatgacatga-tttttttcctatatatagacaacttgcttttcattattttcat 9270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 50246580 - 50246546
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||||||||||||||||||||||||||||    
T  50246580 ctatatatagacaatttgtttttcattattttcat 50246546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 2766153 - 2766088
Alignment:
Q  106 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || |||| ||| |||| |||||    
T  2766153 atattcttcatctcatttaatgttttcttatcatctaatcaaattgaattacgactcattcatttt 2766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10027372 - 10027340
Alignment:
Q  40 atctttatctttatctttattatatatatttgc 72  Q
    |||||||||||||||||||||||||||||||||    
T  10027372 atctttatctttatctttattatatatatttgc 10027340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 42392259 - 42392291
Alignment:
Q  40 atctttatctttatctttattatatatatttgc 72  Q
    |||||||||||||||||||||||||||||||||    
T  42392259 atctttatctttatctttattatatatatttgc 42392291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 36144410 - 36144377
Alignment:
Q  40 atctttatctttatctttattatatatatttgcg 73  Q
    |||||||||||||||||||||||||| |||||||    
T  36144410 atctttatctttatctttattatatacatttgcg 36144377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 22505440 - 22505412
Alignment:
Q  44 ttatctttatctttattatatatatttgc 72  Q
    |||||||||||||||||||||||||||||    
T  22505440 ttatctttatctttattatatatatttgc 22505412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 21992799 - 21992555
Alignment:
Q  46 atctttatctttattatatatatttgcgttannnnnnnnnaaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatc 145  Q
    |||||||||||||||||||||||||||| ||         |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21992799 atctttatctttattatatatatttgcgctatttttttttaaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatc 21992700  T
Q  146 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga-n 244  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      
T  21992699 aaaatggattatgacacatttattttatatcaaccaatcaaaagaggatcatgactcatttgtttttcttgagccaatcaaaatggatcatgatatgatt 21992600  T
Q  245 nnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
            |||||||||||||||||||||||||||||||||||||    
T  21992599 ttttttttctatatatagacaatttgtttttcattattttcatct 21992555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 33452444 - 33452320
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  33452444 catctcatttaatgttttcttatcatccaatcaaaatgaattatgaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 33452345  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||||    
T  33452344 atgagccaatcaaaatggatcatga 33452320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 13705617 - 13705495
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  13705617 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 13705520  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||||    
T  13705519 atgagccaatcaaaatggatcatga 13705495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 15654083 - 15654155
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 186  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654083 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15654155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 15664036 - 15664108
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 186  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15664036 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 4857034 - 4856915
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 216  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  4857034 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 4856936  T
Q  217 agccaatcaaaatggatcatg 237  Q
    ||||||||||||| |||||||    
T  4856935 agccaatcaaaattgatcatg 4856915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 30890175 - 30890054
Alignment:
Q  119 catttaatgttttctt-atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatg 216  Q
    ||||||||||||| || |||||||||||||||| ||| ||||| ||| ||||||  | ||||||||||||| |  ||||||||||||||| |||| ||||    
T  30890175 catttaatgttttttttatcatccaatcaaaatagatcatgactcatatatttttcaacaaccaataaaaaaattgatcatgactcatttattttacatg 30890076  T
Q  217 agccaatcaaaatggatcatga 238  Q
    | ||||||||||| ||||||||    
T  30890075 atccaatcaaaattgatcatga 30890054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 11550248 - 11550417
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 216  Q
    |||||||||||||||||||||||||| ||| |  |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  11550248 catttaatgttttcttatcatccaattaaattaaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 11550346  T
Q  217 agccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||||||| |||||||   |||         |||||||| |||||||||||||||||| |||||||    
T  11550347 agccaatcaaaattgatcatgtcttgatttttttccctatatattgacaatttgtttttcattgttttcat 11550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 4749520 - 4749617
Alignment:
Q  192 gatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||| ||||          |||||||| ||||||||||||||||||| |||||||    
T  4749520 gatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttctatatatataaacaatttgtttttcattatcttcatct 4749617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 287
Target Start/End: Original strand, 27434709 - 27434881
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  27434709 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 27434807  T
Q  214 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  27434808 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 27434881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 15654187 - 15654233
Alignment:
Q  184 aaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatg 230  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||    
T  15654187 aaaaaaaggatcatgactcatttgtttttcatgttccaatcaaaatg 15654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 15664142 - 15664182
Alignment:
Q  190 aggatcatgactcatttgtttttcatgagccaatcaaaatg 230  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  15664142 aggatcatgactcatttgtttttcatgttccaatcaaaatg 15664182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 33452285 - 33452249
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||||||||||||||||||||||| ||||||||||    
T  33452285 ctatatatagacaatttgtttttcatcattttcatct 33452249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 4749243 - 4749274
Alignment:
Q  40 atctttatctttatctttattatatatatttg 71  Q
    ||||||||||||||||||||||||||||||||    
T  4749243 atctttatctttatctttattatatatatttg 4749274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 32681527 - 32681561
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||||||||||| |||||||||||||||||    
T  32681527 ctatatatagacaatttatttttcattattttcat 32681561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 27428653 - 27428682
Alignment:
Q  40 atctttatctttatctttattatatatatt 69  Q
    ||||||||||||||||||||||||||||||    
T  27428653 atctttatctttatctttattatatatatt 27428682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 1608101 - 1608073
Alignment:
Q  119 catttaatgttttcttatcatccaatcaa 147  Q
    |||||||||||||||||||||||||||||    
T  1608101 catttaatgttttcttatcatccaatcaa 1608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 13705459 - 13705427
Alignment:
Q  257 atatagacaatttgtttttcattattttcatct 289  Q
    |||||||||||||||||||||| ||||||||||    
T  13705459 atatagacaatttgtttttcatcattttcatct 13705427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 15888606 - 15888574
Alignment:
Q  40 atctttatctttatctttattatatatatttgc 72  Q
    |||| ||||||||||||||||||||||||||||    
T  15888606 atctctatctttatctttattatatatatttgc 15888574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 40 - 289
Target Start/End: Original strand, 9080 - 9330
Alignment:
Q  40 atctttatctttatctttattatatatatttgcgttannnnnnnnnaaagg-acacgtggcaagcttatattctccatcccatttaatgttttcttatca 138  Q
    |||||||||||||||||||||||||||||||| | ||         ||| | |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9080 atctttatctttatctttattatatatatttgtgctattttttttaaaaagtacacgtggtaagcttatattttccatcccatttaatgttttcttatca 9179  T
Q  139 tccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9180 tccaatcaaaatggattataacacatttattttatatcaaccaataaaaagaggatcatgactcatttatttttcatgagccaatcaaaatggatcatga 9279  T
Q  239 tatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||         |||||||||||||||||||||||||||||||||||||    
T  9280 tatgatttttttttctatatatagacaatttgtttttcattattttcatct 9330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 103 - 289
Target Start/End: Original strand, 19095344 - 19095530
Alignment:
Q  103 cttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 202  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19095344 cttatattctccatcccatttaatgttttcttatcattcaataaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 19095443  T
Q  203 atttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||||||||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||||||    
T  19095444 atttgtttttcatgagccaatcaaaatggatcacgatatgatttttttttctatatatagacaatttgtttttcattattttcatct 19095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 8314088 - 8313968
Alignment:
Q  168 ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaat 267  Q
    |||| ||||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||||| ||||         ||||||||||||||     
T  8314088 ttttttatcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaa 8313990  T
Q  268 ttgtttttcattattttcatct 289  Q
    || |||||||||||||||||||    
T  8313989 ttatttttcattattttcatct 8313968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 45914958 - 45915138
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| |||||||||||||||||||||||||||||| || ||||||||  ||| ||||| | || | ||||| || |  | | ||||||||||||    
T  45914958 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgacttattcatttttttattagccaattaagat-gaaccatgactcattt 45915056  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnc-tatatatagacaatttgtttttcattattttcat 287  Q
      ||||||| | |||||||||||||||||||   |||         | | ||||||||||||||||||||||||||||||||    
T  45915057 agttttcatcaaccaatcaaaatggatcatgccttgattttttttccctgtatatagacaatttgtttttcattattttcat 45915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 287
Target Start/End: Original strand, 46514368 - 46514540
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||| | |||| |||||||||||  || | ||| |||||| ||| |||  |||||| ||||  | || |||| |||||| ||||||    
T  46514368 catctcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaa-tgaatgatgattcatttatttttc 46514466  T
Q  214 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  46514467 attagccaattaaaattgatcatgacatgattttttcccctatatatagacaacttgcttttcattattttcat 46514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 8106997 - 8106928
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 188  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8106997 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8106928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 8111643 - 8111574
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 188  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8111643 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8111574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 15535348 - 15535296
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    |||||||||||||||||||||||||||||| || |||||||| |||| |||||    
T  15535348 catttaatgttttcttatcatccaatcaaattgaattatgactcattcatttt 15535296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 22544288 - 22544110
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||||    
T  22544288 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcattt 22544190  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
      ||||||| | ||||||||||| |||||||   |||         ||||||||| |||||||||||||||||||||||||    
T  22544189 agttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcat 22544110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 3417383 - 3417429
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatg 237  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  3417383 ggatcatgactcatttatttttcatcagccaatcaaaattgatcatg 3417429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 41322437 - 41322471
Alignment:
Q  39 aatctttatctttatctttattatatatatttgcg 73  Q
    |||||||||||||||||||||||||||||||||||    
T  41322437 aatctttatctttatctttattatatatatttgcg 41322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 8314098 - 8314029
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 188  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||    
T  8314098 catttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 8314029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 16995447 - 16995480
Alignment:
Q  40 atctttatctttatctttattatatatatttgcg 73  Q
    ||||||||||||||||||||||||||||||||||    
T  16995447 atctttatctttatctttattatatatatttgcg 16995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 15535215 - 15535181
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||| |||||||||||||||||||||||||    
T  15535215 ctatatataaacaatttgtttttcattattttcat 15535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 40700108 - 40700137
Alignment:
Q  44 ttatctttatctttattatatatatttgcg 73  Q
    ||||||||||||||||||||||||||||||    
T  40700108 ttatctttatctttattatatatatttgcg 40700137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 11440957 - 11440993
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  11440957 ctatatataaacagtttgtttttcattattttcatct 11440993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 52)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15606086 - 15605962
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15606086 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15605987  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||| ||||||||||||    
T  15605986 atgagccaatcataatggatcatga 15605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15614439 - 15614315
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15614439 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15614340  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||| ||||||||||||    
T  15614339 atgagccaatcataatggatcatga 15614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15648255 - 15648131
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15648255 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15648156  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||||    
T  15648155 atgagccaatcaaaatggatcatga 15648131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 10894547 - 10894666
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  10894547 catttaatgttttcttatcatccaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaatgattataactcatttgtttttcatgag 10894646  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||||||||||||    
T  10894647 ccaatcaaaatggatcatga 10894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15624467 - 15624343
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15624467 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15624368  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    || ||||||||||||||||||||||    
T  15624367 atcagccaatcaaaatggatcatga 15624343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 15624279 - 15624165
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15624279 catttaatgttttcttatcatccaatcaaaatggattttgacacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15624180  T
Q  219 ccaatcaaaatggat 233  Q
    ||||| |||||||||    
T  15624179 ccaattaaaatggat 15624165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 15637610 - 15637492
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15637610 catctcatttaatgttttcctatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 15637511  T
Q  214 atgagccaatcaaaatgga 232  Q
    |||| ||||||| ||||||    
T  15637510 atgatccaatcataatgga 15637492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 15648067 - 15647953
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15648067 catttaatgttttcttatcatccaatcaaaatggattttggcacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15647968  T
Q  219 ccaatcaaaatggat 233  Q
    |||||||||||||||    
T  15647967 ccaatcaaaatggat 15647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15637426 - 15637302
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  15637426 catctcatttaatgttttcctatcatccaatgacaatggattttgacacatttattttatatcaaccaataaaaaatggatcatgactcatttgtttttc 15637327  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||| ||||||||||||    
T  15637326 atgagccaatcataatggatcatga 15637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 15637794 - 15637676
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15637794 catctcatttaatgttttcttaacatccaatcagaatgaattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgtttttc 15637695  T
Q  214 atgagccaatcaaaatgga 232  Q
    |||||||||||| ||||||    
T  15637694 atgagccaatcataatgga 15637676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 15613928 - 15613808
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgttttt 212  Q
    |||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  15613928 catctcatttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaagcatcatgactcatttgttttt 15613829  T
Q  213 catgagccaatcaaaatggat 233  Q
    |||||||||||||||||||||    
T  15613828 catgagccaatcaaaatggat 15613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15637243 - 15637119
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  15637243 catctcatttaatgttttcttatcattcaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgaccatgactcatttgtttttc 15637144  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||| ||| ||||||||    
T  15637143 atgagccaatcataatagatcatga 15637119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 16250411 - 16250529
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||| ||||||||| || |||||||||||    
T  16250411 catttaatgttttcttatcatccaatcaaaatagattatgacacatttgttttatatcaaccaatcaaaaaaggagcatgactca-ttatttttcatgag 16250509  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||||||||||||    
T  16250510 ccaatcaaaatggatcatga 16250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 15637060 - 15636942
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  15637060 catctcatttaat-ttttattatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgttttta 15636962  T
Q  214 atgagccaatcaaaatggat 233  Q
    ||||| ||||||||||||||    
T  15636961 atgagtcaatcaaaatggat 15636942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 20540926 - 20540820
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  20540926 catttaacgtttttttatcctccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaagaatcataactcatttgtttttcatgag 20540827  T
Q  219 ccaatca 225  Q
    |||||||    
T  20540826 ccaatca 20540820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 15605567 - 15605455
Alignment:
Q  122 ttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgtttttcatgagcc 220  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||    
T  15605567 ttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaaacatcatgactcatttgtttttcatgagcc 15605468  T
Q  221 aatcaaaatggat 233  Q
    |||||||||||||    
T  15605467 aatcaaaatggat 15605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15614256 - 15614133
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15614256 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15614158  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||||| ||| ||||||||    
T  15614157 atgagccaatcataatagatcatga 15614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 38050321 - 38050219
Alignment:
Q  86 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 185  Q
    |||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  38050321 aaagtacatgtggcaagcttatattctccatctcatttaatattttcttatcatccaatcaaaatggattatgacacatttattttatatcatccaatca 38050222  T
Q  186 aaa 188  Q
    |||    
T  38050221 aaa 38050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 15605721 - 15605628
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 207  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15605721 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttg 15605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15605903 - 15605780
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15605903 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15605805  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
    |||||||||| | ||| ||||||||    
T  15605804 atgagccaattataatagatcatga 15605780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 15614073 - 15613981
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 207  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15614073 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aggatcatgactcatttg 15613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 15624597 - 15624526
Alignment:
Q  167 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15624597 attttatatcaaccaataaaaaaaggatcatgactcatttgttttttatgagccaatcataatggatcatga 15624526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 10895864 - 10895992
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||| |  |||| ||||  |||||||||||||||| ||||||    
T  10895864 catctcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaat-ggatcatgactcatttatttttc 10895962  T
Q  214 atgagccaatcaaaatggatcatgatatga 243  Q
    || ||||||||||||| |||||||| ||||    
T  10895963 attagccaatcaaaattgatcatgacatga 10895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 15613541 - 15613469
Alignment:
Q  165 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  15613541 ttattttatatcaaccaataaaaaaag-atcatgactcatttttttttcatgagccaatcaaaatggatcatga 15613469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 287343 - 287496
Alignment:
Q  135 atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatc 234  Q
    |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| ||||| || ||||||||||||| ||||    
T  287343 atcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttattttttattagccaatcaaaattgatc 287441  T
Q  235 atgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    |||| || |         |||||||||||||| ||||||||||||||||||||||    
T  287442 atgacataattttttttcctatatatagacaaattgtttttcattattttcatct 287496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 15605402 - 15605343
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 173  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15605402 catctcatttaatgttttcttatcatccaatcaaaatggattttgacacatttattttat 15605343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 15648385 - 15648314
Alignment:
Q  167 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  15648385 attttacatcaaccaataaaaaaaggaccatgactcatttgttttttatgagccaatcataatggatcatga 15648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 15923684 - 15923611
Alignment:
Q  165 ttattttatatcaaccaataaaaagaggatcatgactcatttgttttt-catgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  15923684 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttttcatgagccaatcaaaatggatcatga 15923611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 15605188 - 15605117
Alignment:
Q  165 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||    
T  15605188 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttt-atgagccaatcaaaatggatcatga 15605117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 25113514 - 25113397
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatga 217  Q
    ||||||||||||| |||||||||||| ||||| ||||||||| || |||| | || | ||||||| |||| |  ||||||||||||||| |||||||| |    
T  25113514 catttaatgtttttttatcatccaattaaaatagattatgactcacttatat-attttaaccaatcaaaaaatagatcatgactcatttatttttcatta 25113416  T
Q  218 gccaatcaaaatggatcat 236  Q
    ||||||||||||| |||||    
T  25113415 gccaatcaaaatgaatcat 25113397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 15613755 - 15613696
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 173  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  15613755 catctcatttaatgttttcttatcatacaatcaaaacggattttgacacatttattttat 15613696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 17895138 - 17895021
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  17895138 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 17895041  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||| ||||||||    
T  17895040 ccaatcaaaattgatcatga 17895021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 4930230 - 4930272
Alignment:
Q  196 atgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4930230 atgactcatttgtttttcatgagccaatcaaaatggatcatga 4930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 18666790 - 18666969
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| ||||||||| ||| |||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||||    
T  18666790 attcttcatctcatttaatgcttttttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcattt 18666888  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
      ||||||| | |||||||||||||||||||   |||         |||||||||| ||||||||||||||||||||||||    
T  18666889 agttttcatcaaccaatcaaaatggatcatgccttgatttttttccctatatataggcaatttgtttttcattattttcat 18666969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 23136464 - 23136533
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 188  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  23136464 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 23136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 15923991 - 15923951
Alignment:
Q  193 atcatgactcatttgtttttcatgagccaatcaaaatggat 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15923991 atcatgactcatttgtttttcatgagccaatcaaaatggat 15923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 289
Target Start/End: Complemental strand, 27521272 - 27521102
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcatttgtttttcatga 217  Q
    ||||||||| |||  ||||| ||||| |||||||||  ||   |||||||||| | |||| ||||| ||||  ||||||||||| |||| ||||||||||    
T  27521272 catttaatgcttttctatcaaccaattaaaatggatcctgcatcatttatttttttatcagccaatcaaaat-ggatcatgactaatttctttttcatga 27521174  T
Q  218 gccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||||||||| || ||||  ||||         ||||| ||||| |||||||||||||||||||||||||    
T  27521173 gccaatcaaaattgaccatgtcatgattttttttcctatacatagataatttgtttttcattattttcatct 27521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 15923898 - 15923839
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 173  Q
    |||| |||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  15923898 catctcatttaatattttcttatcatccaatcaaaacagattttgacacatttattttat 15923839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 284
Target Start/End: Original strand, 8362304 - 8362480
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| | || | |||| ||| | ||||| || |  | | ||||||||||||    
T  8362304 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactctttcatttttttattagccaatcaaga-tgaaccatgactcattt 8362402  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattatttt 284  Q
      ||||||| | ||||||||||| |||||||   |||          |||||||||||||||||||||||||||||||    
T  8362403 agttttcatcaaccaatcaaaattgatcatgccttgatttttttccttatatatagacaatttgtttttcattatttt 8362480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12167224 - 12167179
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  12167224 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 12167179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12411652 - 12411607
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  12411652 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 12411607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 35136706 - 35136758
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| ||||    
T  35136706 catttaatgttttcttatcatccaatcaaattgaattatgactcatttgtttt 35136758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 772688 - 772597
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtt 209  Q
    ||||||||||||  ||||||| ||||||||||| |||||||| ||| ||||||  | |||||||| |||||   ||||||||||||||||||    
T  772688 catttaatgtttctttatcattcaatcaaaatgaattatgactcatctatttttcaacaaccaatcaaaaaatagatcatgactcatttgtt 772597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 15636889 - 15636830
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 173  Q
    |||| |||||||||| || ||||||||||||||||| |||||  ||||||||||||||||    
T  15636889 catctcatttaatgtatttttatcatccaatcaaaacggatttggacacatttattttat 15636830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 19190675 - 19190710
Alignment:
Q  38 taatctttatctttatctttattatatatatttgcg 73  Q
    ||||||||||||||||||||||||||||||||||||    
T  19190675 taatctttatctttatctttattatatatatttgcg 19190710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 23689282 - 23689219
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||||    
T  23689282 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttt 23689219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 45251121 - 45250949
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgttttt 212  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | || || || |  | | ||||||||||||  ||||    
T  45251121 catctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccgatcaaga-tgaaccatgactcatttagtttt 45251023  T
Q  213 catgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    ||| | ||||||||||| |||||||   |||         |||||||||||||||||||||||||||||||||||    
T  45251022 catcaaccaatcaaaattgatcatgccttga-tttttttcctatatatagacaatttgtttttcattattttcat 45250949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 16291992 - 16292037
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  16291992 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcat 16292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 4930305 - 4930340
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatc 288  Q
    |||||||||||||||||||||||||| |||||||||    
T  4930305 ctatatatagacaatttgtttttcatcattttcatc 4930340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 23689138 - 23689104
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||| |||||||||||||||||||||||||    
T  23689138 ctatatataaacaatttgtttttcattattttcat 23689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 23161172 - 23161056
Alignment:
Q  120 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 219  Q
    |||||||||||||||| ||| |||||||| || || ||||| ||||| |||| ||| |  |||| ||||  | |||||||| |||||  |||||||  ||    
T  23161172 atttaatgttttcttaacatacaatcaaattgaatcatgactcatttcttttttattagtcaatcaaaa-tgaatcatgacacatttagttttcataggc 23161074  T
Q  220 caatcaaaatggatcatg 237  Q
    |||||||||| |||||||    
T  23161073 caatcaaaattgatcatg 23161056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 25063975 - 25064004
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaa 148  Q
    ||||||||||||||||||||||||||||||    
T  25063975 catttaatgttttcttatcatccaatcaaa 25064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 34410 - 34291
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  34410 catttaatgctttcatatcatctaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttcatgag 34311  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||||||| ||||    
T  34310 ccaatcaaaatggattatga 34291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 37069805 - 37069683
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  37069805 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 37069708  T
Q  214 atgagccaatcaaaatggatcatga 238  Q
     ||||||||||||||||||||||||    
T  37069707 gtgagccaatcaaaatggatcatga 37069683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 17462041 - 17461926
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||     
T  17462041 catttagtgtttttttatcaaccaatcaaaatggattatgatacatttattttatatcaaccaat-aaaagaagattatgactcatttgtgttttatgaa 17461943  T
Q  219 ccaatcaaaatggatca 235  Q
    |||||||||||||||||    
T  17461942 ccaatcaaaatggatca 17461926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 289
Target Start/End: Complemental strand, 24193 - 24024
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||| ||||||||||| |||||||| ||    
T  24193 catttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggataatgactcatttatttttcattag 24095  T
Q  219 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||||||| |||||||| ||||         |||||||||||||| ||||||||||||||||||||||    
T  24094 ccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttttcattattttcatct 24024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 13914798 - 13914684
Alignment:
Q  174 atcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgttt 273  Q
    |||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||| | ||||         |||||||||||||| ||||||    
T  13914798 atcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgttt 13914700  T
Q  274 ttcattattttcatct 289  Q
    ||||||||||||||||    
T  13914699 ttcattattttcatct 13914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 13923330 - 13923288
Alignment:
Q  196 atgactcatttgtttttcatgagccaatcaaaatggatcatga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13923330 atgactcatttgtttttcatgagccaatcaaaatggatcatga 13923288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 18066848 - 18066676
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  18066848 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 18066750  T
Q  214 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  18066749 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 18066676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 35647971 - 35648138
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||||| ||||||||||||||||||||| || ||||||||  ||||||||| ||| | ||||| ||||  |  |||| || |||||  ||||||  ||    
T  35647971 catttaatattttcttatcatccaatcaaattgaattatgacttatttattttttattagccaatcaaaa-tgattcataacacatttagttttcactag 35648069  T
Q  219 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||||| | |||||  ||||         |||||||| ||||||||||||||||||||||||||    
T  35648070 ccaatcaaaattgttcatgtcatgattttttttcctatatattgacaatttgtttttcattattttcat 35648138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 14288190 - 14288140
Alignment:
Q  193 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga 243  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  14288190 atcatgactcatttatttttcattagccaatcaaaattgatcatgacatga 14288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 37069651 - 37069615
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37069651 ctatatatagacaatttgtttttcatcattttcatct 37069615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 13923253 - 13923218
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatc 288  Q
    |||||||||||||||||||||||||| |||||||||    
T  13923253 ctatatatagacaatttgtttttcatcattttcatc 13923218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 55058011 - 55057980
Alignment:
Q  40 atctttatctttatctttattatatatatttg 71  Q
    ||||||||||||||||||||||||||||||||    
T  55058011 atctttatctttatctttattatatatatttg 55057980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 10780389 - 10780423
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||| ||||||||||||||||||||||||    
T  10780389 ctatatataggcaatttgtttttcattattttcat 10780423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 10973998 - 10974032
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||| ||||||||||||||||||||||||    
T  10973998 ctatatataggcaatttgtttttcattattttcat 10974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 13924648 - 13924614
Alignment:
Q  38 taatctttatctttatctttattatatatatttgc 72  Q
    |||||| ||||||||||||||||||||||||||||    
T  13924648 taatctctatctttatctttattatatatatttgc 13924614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 17990085 - 17990114
Alignment:
Q  40 atctttatctttatctttattatatatatt 69  Q
    ||||||||||||||||||||||||||||||    
T  17990085 atctttatctttatctttattatatatatt 17990114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 18072904 - 18072875
Alignment:
Q  40 atctttatctttatctttattatatatatt 69  Q
    ||||||||||||||||||||||||||||||    
T  18072904 atctttatctttatctttattatatatatt 18072875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 501100 - 501220
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtttttcatga 217  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||    
T  501100 catttaatactttcttatcatccaatcaaaattgattatgacacatttattttatatcaatcgataaaaaaaaggatcatgactcatttgtttttcatga 501199  T
Q  218 gccaatcaaaatggatcatga 238  Q
    |||||||||||| ||||||||    
T  501200 gccaatcaaaatagatcatga 501220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 36647960 - 36648079
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||  |||| || | |||||||||||| |||||     
T  36647960 catttaatgttttcttatcttctaatcaaaatagattatgtcacgtttattttatatcaaccaataaaagaaggaccacggctcatttgttttacatgaa 36648059  T
Q  219 ccaatcaaaatggatcatga 238  Q
    ||||||||||||||||||||    
T  36648060 ccaatcaaaatggatcatga 36648079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 27588612 - 27588791
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| |||||||| ||||||||||||||||||||| || |||||||| |||||| |||| ||| | ||||| || |  | | ||||||||||||    
T  27588612 attcttcatctcatttaatattttcttatcatccaatcaaattgaattatgactcatttatttttttattagccaatcaaga-tgaaccatgactcattt 27588710  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
      ||||||| | ||||||||||| |||||||   |||         | |||||||||||||||||||||||||||||||||    
T  27588711 agttttcatcaaccaatcaaaattgatcatgccttgattttttttccaatatatagacaatttgtttttcattattttcat 27588791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 9663135 - 9663066
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 188  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  9663135 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 9663066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 19205946 - 19205849
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||   ||||         ||||||||||| |||||||||||||||||||||||||    
T  19205946 ggatcatgactcatctatttttcatgagccaatcaaaattgatcatatcatga-tttttttcctatatatagataatttgtttttcattattttcatct 19205849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 29857767 - 29857812
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  29857767 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcat 29857812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 501252 - 501288
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  501252 ctatataaagacaatttgtttttcatcattttcatct 501288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 11127769 - 11127864
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgt 208  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  11127769 catctcatttaatattttattatcaaccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaaaagatcatgactcatttgt 11127864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 45049526 - 45049668
Alignment:
Q  146 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgann 245  Q
    ||||| ||| ||||| |||||| ||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||||||||||||| |||||||| ||||      
T  45049526 aaaatagatcatgactcatttaatttttattagccaatcaaaat-ggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgatt 45049624  T
Q  246 nnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
           |||||||||||||| ||||||||||||||||||||||    
T  45049625 ttttttcctatatatagacaaattgtttttcattattttcatct 45049668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 21119845 - 21120024
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttta-tatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||||| ||| | ||||| || |  | | ||||||||||||    
T  21119845 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttattattagccaatcaaga-tgaaccatgactcattt 21119943  T
Q  207 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
      |||| || | ||||| ||||| ||||||| | |||         |||||||||||||||||||||||||||||||||||    
T  21119944 agtttttatcaaccaattaaaattgatcatgctttgattttttttcctatatatagacaatttgtttttcattattttcat 21120024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 20103500 - 20103562
Alignment:
Q  109 ttctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    |||| |||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  20103500 ttctacatctcatttaatgttttcttatcatccaatcaaattgaattatgactcatttatttt 20103562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 5243304 - 5243259
Alignment:
Q  191 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  5243304 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 5243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 5244858 - 5244826
Alignment:
Q  40 atctttatctttatctttattatatatatttgc 72  Q
    |||||||||||||||||||||||||||||||||    
T  5244858 atctttatctttatctttattatatatatttgc 5244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 24972172 - 24972140
Alignment:
Q  255 atatatagacaatttgtttttcattattttcat 287  Q
    |||||||||||||||||||||||||||||||||    
T  24972172 atatatagacaatttgtttttcattattttcat 24972140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 24972324 - 24972272
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgac 160  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || ||||||||    
T  24972324 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgac 24972272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 41747366 - 41747418
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 171  Q
    ||||||||||||| |||||||||||||||| || ||||||||  |||||||||    
T  41747366 catttaatgttttattatcatccaatcaaattgaattatgacttatttatttt 41747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 20103644 - 20103678
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    ||||||||||||| |||||||||||||||||||||    
T  20103644 ctatatatagacactttgtttttcattattttcat 20103678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 31300006 - 31300044
Alignment:
Q  146 aaaatggattatgacacatttattttatatcaaccaata 184  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  31300006 aaaaaggattatgaaacatttattttatatcaaccaata 31300044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 14876065 - 14876037
Alignment:
Q  45 tatctttatctttattatatatatttgcg 73  Q
    |||||||||||||||||||||||||||||    
T  14876065 tatctttatctttattatatatatttgcg 14876037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 67354 - 67189
Alignment:
Q  123 taatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaa 222  Q
    ||||||||| |||||| ||||| ||||||||| ||||| |||||||||| ||| | | ||| ||||  ||||||| |||||||| |||||||| ||||||    
T  67354 taatgtttttttatcaaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaat-ggatcataactcatttatttttcattagccaa 67256  T
Q  223 tcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    |||||||  ||||||| |||          ||||||||| |||||||||||||||||||||||||||    
T  67255 tcaaaatttatcatgaaatggttttttttcctatatatacacaatttgtttttcattattttcatct 67189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 287
Target Start/End: Complemental strand, 7946613 - 7946432
Alignment:
Q  106 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcat 204  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |  |||||||| |||| | |||| ||| | ||||| || |  | | ||||||||||    
T  7946613 atattcttcatctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcatttttttattagccaatcaaga-tgaaccatgactcat 7946515  T
Q  205 ttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    ||  ||||||| | ||||||||||||||||||| | |||         |||||||||||||||||||||||||||||||||||    
T  7946514 ttagttttcatcaaccaatcaaaatggatcatgttttgatttttttccctatatatagacaatttgtttttcattattttcat 7946432  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 29493987 - 29494104
Alignment:
Q  120 atttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    |||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | ||||||||||||||  ||||||| |     
T  29493987 atttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaatcatgactcatttagttttcatcaa 29494085  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  29494086 ccaatcaaaattgatcatg 29494104  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 29494118 - 29494152
Alignment:
Q  253 ctatatatagacaatttgtttttcattattttcat 287  Q
    |||||||||||||||||||||||||||||||||||    
T  29494118 ctatatatagacaatttgtttttcattattttcat 29494152  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 30878825 - 30878866
Alignment:
Q  195 catgactcatttgtttttcatgagccaatcaaaatggatcat 236  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||    
T  30878825 catgactcaattgtttttcatgatccaatcaaaatagatcat 30878866  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 48553313 - 48553341
Alignment:
Q  45 tatctttatctttattatatatatttgcg 73  Q
    |||||||||||||||||||||||||||||    
T  48553313 tatctttatctttattatatatatttgcg 48553341  T

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Target: scaffold0022 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 289
Target Start/End: Original strand, 101102 - 101272
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||    
T  101102 catttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttatttttcataag 101200  T
Q  219 ccaatcaaaatggatcatgatatga-nnnnnnnnnctatatatagacaatttgtttttcattattttcatct 289  Q
    ||||||||||| || ||| | ||||          |||||||||||||| ||||||| ||||||||||||||    
T  101201 ccaatcaaaattgagcattacatgattttttttttctatatatagacaaattgttttacattattttcatct 101272  T

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Target: scaffold0155 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 26657 - 26786
Alignment:
Q  108 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttat-tttatatcaaccaataaaaagaggatcatgactcattt 206  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| |||| || ||| ||| ||||||| || |  | | ||||||||||||    
T  26657 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatatttttattaaccaatcaaga-tgaaccatgactcattt 26755  T
Q  207 gtttttcatgagccaatcaaaatggatcatg 237  Q
      ||||||| | |||||||||||||||||||    
T  26756 agttttcatcaaccaatcaaaatggatcatg 26786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 256 - 287
Target Start/End: Original strand, 26805 - 26836
Alignment:
Q  256 tatatagacaatttgtttttcattattttcat 287  Q
    ||||||||||||||||||||||||||||||||    
T  26805 tatatagacaatttgtttttcattattttcat 26836  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 52654 - 52482
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  52654 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaaga-tggaccatgactcatttagttttc 52556  T
Q  214 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    |  | ||||||||||| ||| |    ||||         || ||||||||||||||||||||||||||||||||    
T  52555 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcat 52482  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 58710 - 58681
Alignment:
Q  40 atctttatctttatctttattatatatatt 69  Q
    ||||||||||||||||||||||||||||||    
T  58710 atctttatctttatctttattatatatatt 58681  T

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Target: scaffold0289 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 287
Target Start/End: Complemental strand, 22239 - 22068
Alignment:
Q  114 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 213  Q
    |||| ||||||||| ||| | |||| |||||||||||  || ||||| |||||||||| |||    |||| |||| |  |||||||||||||| ||||||    
T  22239 catctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaataa-atcatgactcatttatttttc 22141  T
Q  214 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 287  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  22140 attagccaattaaaattgatcatgacatga-ttttttccctatatatagacaacttgcttttcattattttcat 22068  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 67302 - 67185
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  67302 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 67204  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  67203 ccaatcaaaattgatcatg 67185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 75407 - 75290
Alignment:
Q  119 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 218  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  75407 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 75309  T
Q  219 ccaatcaaaatggatcatg 237  Q
    ||||||||||| |||||||    
T  75308 ccaatcaaaattgatcatg 75290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 17139 - 17020
Alignment:
Q  120 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 219  Q
    |||||||||||| | |||| ||||||||||| |||  |||| |||||||||| ||| ||||||| |||| | |||||||||| |||| | ||| || ||     
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaata-gatcatgacttatttatattttattag- 17044  T
Q  220 caatcaaaatggatcatgatatga 243  Q
    |||||||||| |||||||| ||||    
T  17043 caatcaaaattgatcatgacatga 17020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 30978 - 31009
Alignment:
Q  42 ctttatctttatctttattatatatatttgcg 73  Q
    ||||||||||||||||||||||||||||||||    
T  30978 ctttatctttatctttattatatatatttgcg 31009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 167814 - 167783
Alignment:
Q  42 ctttatctttatctttattatatatatttgcg 73  Q
    ||||||||||||||||||||||||||||||||    
T  167814 ctttatctttatctttattatatatatttgcg 167783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 3147 - 3119
Alignment:
Q  44 ttatctttatctttattatatatatttgc 72  Q
    |||||||||||||||||||||||||||||    
T  3147 ttatctttatctttattatatatatttgc 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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