View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_high_42 (Length: 262)
Name: NF14649_high_42
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 21194692 - 21194855
Alignment:
| Q |
80 |
gcgggtttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctaga |
179 |
Q |
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| T |
21194692 |
gcgggcttgttaaggaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagctaga |
21194791 |
T |
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| Q |
180 |
aatctctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatacttt |
243 |
Q |
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| T |
21194792 |
aatatctgatattgacgctattacagaacaaactgttgatatcagcaagaaagaggcatgcttt |
21194855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 21199945 - 21200107
Alignment:
| Q |
80 |
gcgggtttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctaga |
179 |
Q |
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| T |
21199945 |
gcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaactacttcacaagctgga |
21200044 |
T |
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| Q |
180 |
aatctctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatacttt |
243 |
Q |
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| T |
21200045 |
aatctctgatattggcac-atcacggaacaaactgttgatatcagcaagaaagaggcatgcttt |
21200107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 24284461 - 24284617
Alignment:
| Q |
85 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctagaaatct |
184 |
Q |
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| T |
24284461 |
tttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccactacttcaaaagcttgaaatca |
24284560 |
T |
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| Q |
185 |
ctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatact |
241 |
Q |
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| T |
24284561 |
caaacattggtgctattgttgaagaatctgttgaaatcagcaagcaagaggcatact |
24284617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 24232279 - 24232120
Alignment:
| Q |
85 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctagaaatct |
184 |
Q |
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| T |
24232279 |
tttgtgaaggaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcg |
24232180 |
T |
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| Q |
185 |
ctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatactttt |
244 |
Q |
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| T |
24232179 |
agactattgatgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 21194509 - 21194546
Alignment:
| Q |
14 |
agatgaagctgaatattgacgacacagaacccatgaaa |
51 |
Q |
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| T |
21194509 |
agatgaaactgaatatcgacgacacagaacccatgaaa |
21194546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 24154031 - 24153975
Alignment:
| Q |
85 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaat |
141 |
Q |
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| T |
24154031 |
tttgttaaggaaactgcttcttttattattcgggacgatctttatgtgatgcctaat |
24153975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 3151496 - 3151577
Alignment:
| Q |
85 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactac |
166 |
Q |
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| T |
3151496 |
tttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcctaatgttttggcaacagttgtacatctac |
3151577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 10989190 - 10989258
Alignment:
| Q |
103 |
gcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaa |
171 |
Q |
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| T |
10989190 |
gcattgatcatttctgatgagctttctattatgcctaatgttttcggaacaattatacatctacttcaa |
10989258 |
T |
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