View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_high_58 (Length: 234)
Name: NF14649_high_58
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_58 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 6525758 - 6525978
Alignment:
| Q |
14 |
tccgtatccgtgcttcgtatcttaggatgtagtcaattttatcctagagtgtcttaattattattttttaaaatacatagggaagttatgcaactgggag |
113 |
Q |
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| T |
6525758 |
tccgtatccgtgcttcgtatcttaggatgtagtcaattttatcctagtgtgtcttaattattattttttaaaatacatagggaagttatgcaactgggag |
6525857 |
T |
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| Q |
114 |
gttaggcagttatttgatgtaaactgtcacaatccgtctccattcagtaaacaagatgctgatatatctgatgtgcttgtgtaaacaaaatggtttgaca |
213 |
Q |
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| T |
6525858 |
gttaggcagttatttgatgtaaactgtcacaatccgtctctattcagtaaacaagatgctgatatatctgatgtgcttgtgtaaacaaaatggtttgata |
6525957 |
T |
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| Q |
214 |
gaaattatatagatgagcatt |
234 |
Q |
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| T |
6525958 |
gaaattatacagatgagcatt |
6525978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 6526001 - 6526045
Alignment:
| Q |
190 |
ttgtgtaaacaaaatggtttgacagaaattatatagatgagcatt |
234 |
Q |
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| T |
6526001 |
ttgtgtaaacaaaatggttttacagaaattaaataaaagagcatt |
6526045 |
T |
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