View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14649_high_7 (Length: 498)
Name: NF14649_high_7
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 124 - 483
Target Start/End: Original strand, 29788188 - 29788544
Alignment:
| Q |
124 |
gaaataaataggtaaattcaagagatatatgaagtgatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaactatgga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29788188 |
gaaataaataggtaaattcaagagatatatgaagtaatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaatgatgga |
29788287 |
T |
|
| Q |
224 |
gcaatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaattttatggattaaagactcaaaaccgtcaccaaggaatccaa |
323 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29788288 |
gcaatcaatactcatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaattttatggattaaagactcaaaaccgtcaccaaggaatccaa |
29788387 |
T |
|
| Q |
324 |
agactaaagttgttacgaccaaccgcaatggatggctacgatggtaacaacccaaggaattaaactttgttcttttctttgtagaacttggatgatatag |
423 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29788388 |
agac---agttgttacgaccaaccgcaatgtatggctacgaccgtaacaacccaaggaattaaactttgttcttttctttgtacaacttggatgatatag |
29788484 |
T |
|
| Q |
424 |
tgttgaaaccaatcttaatgttttatagctcagaggtttacgaattacttaggttgaagc |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29788485 |
tgttgaaaccaatcttaatgttttatagctcagaggtttacgaattacttaggctgaagc |
29788544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 29788092 - 29788124
Alignment:
| Q |
6 |
aggaacacagaaataatggcaatcattgaattc |
38 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
29788092 |
aggaacactgaaataatggcaatcattgaattc |
29788124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 32700829 - 32700988
Alignment:
| Q |
126 |
aataaataggtaaattcaagagatatatgaagtgatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaactatggagc |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | |||||| || || |||||| ||||| || ||||||||| |||||||| || |||||||| |
|
|
| T |
32700829 |
aataaataggtaaatacaagagatatatgaagtaaatgtgcaaaaagatgataaagatttcaaagaacggagacttgccaaccaagtcaagttatggagc |
32700928 |
T |
|
| Q |
226 |
aatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaatttt |
285 |
Q |
| |
|
|||||| || |||||||||||||| ||| ||| ||||| || ||| ||||||||||| |
|
|
| T |
32700929 |
aatcaagacccatttcaatggccaaatagtggataatcactcggaaacacttcaaatttt |
32700988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 31988089 - 31987967
Alignment:
| Q |
182 |
acttcaatcaatggagacttgttaaccaagttaaactatggagcaatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaa |
281 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| || |||| ||||||||| ||| |||||||||||||| || || ||||||| || ||||| ||||| |
|
|
| T |
31988089 |
acttcaatcaatgaagaattgttgaccaagacaagttatgaagcaatcaagactcatttcaatggccaaataatgggcaatcatccagcaaaccatcaaa |
31987990 |
T |
|
| Q |
282 |
ttttatggattaaagactcaaaa |
304 |
Q |
| |
|
||| |||||||||| || ||||| |
|
|
| T |
31987989 |
tttcatggattaaacacccaaaa |
31987967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University