View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_1 (Length: 849)

Name: NF14649_low_1
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_1
NF14649_low_1
[»] chr8 (8 HSPs)
chr8 (1-827)||(5766192-5767021)
chr8 (4-767)||(14003786-14004543)
chr8 (779-831)||(14004534-14004586)
chr8 (533-659)||(34935748-34935874)
chr8 (361-462)||(17635611-17635712)
chr8 (287-417)||(18314638-18314768)
chr8 (361-462)||(17642890-17642991)
chr8 (290-327)||(17643025-17643062)
[»] chr4 (7 HSPs)
chr4 (402-821)||(1481684-1482079)
chr4 (112-233)||(1481511-1481632)
chr4 (290-459)||(8186317-8186486)
chr4 (116-231)||(8186539-8186654)
chr4 (358-450)||(661855-661947)
chr4 (165-227)||(532630-532692)
chr4 (184-238)||(7225324-7225378)
[»] chr6 (5 HSPs)
chr6 (379-462)||(7132323-7132406)
chr6 (379-462)||(7135246-7135329)
chr6 (379-462)||(7138169-7138252)
chr6 (311-419)||(6403528-6403636)
chr6 (358-462)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (358-458)||(1036570-1036670)
[»] chr5 (1 HSPs)
chr5 (290-393)||(29021726-29021829)
[»] chr1 (2 HSPs)
chr1 (188-233)||(19467627-19467672)
chr1 (521-554)||(30827961-30827994)


Alignment Details
Target: chr8 (Bit Score: 728; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 1 - 827
Target Start/End: Complemental strand, 5767021 - 5766192
Alignment:
Q  1 atgttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttgggttccggcggagagcaagatcaatgcctgcgacggttaattgttca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||| |||||||||||||    
T  5767021 atgttccaaaccagtagtaacagtacatgtaatggataaagaagtcaatgttggtttctggaggagagcaagatcaacgcctgcgatggttaattgttca 5766922  T
Q  101 catctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766921 catctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgc 5766822  T
Q  201 ggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  5766821 ggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcatgtgtgtgattaatgattttagaggggtaagcgaggtcaagttcttc 5766722  T
Q  301 tagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagag 400  Q
    |||||||||||||  |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5766721 tagcaaaggaaaagtatcagcaatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagag 5766622  T
Q  401 aaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5766621 aaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcat 5766522  T
Q  501 cgaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttag 600  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5766521 ctaggtcaccgtaatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagttag 5766422  T
Q  601 acagaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttc 700  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5766421 acagaatttgtgacggttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaataccgcttacggtggtcatcatcgtcgttatttttc 5766322  T
Q  701 agcaatctgaacacacgttcccatatatcatctggtaaatctaaatctgaagaaga---agaattcaattgctgtgaacatgaattcaatttgaaagagt 797  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||| |    
T  5766321 agcaatctgaacacacgttcccatatatcatctggtaaatctaattctgaagaagaagaagaattcaattgctgtgaacatgaattcaatttgaaagaat 5766222  T
Q  798 ttgttctctgccttttcattggtggtggtg 827  Q
    ||||||||||||||||||||||||||||||    
T  5766221 ttgttctctgccttttcattggtggtggtg 5766192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 4 - 767
Target Start/End: Original strand, 14003786 - 14004543
Alignment:
Q  4 ttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttgggttccggcggagagcaagatcaatgcctgcgacggttaattgttcacat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||    
T  14003786 ttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtctctggcggagagcaagatcaacgcctgcgacggttaattgttcacat 14003885  T
Q  104 ctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcgga 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003886 ctaagcaagatgacatcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcgga 14003985  T
Q  204 gtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctag 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003986 gtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcatgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctag 14004085  T
Q  304 caaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14004086 caaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaa 14004185  T
Q  404 gctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcga 503  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004186 gctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcga 14004285  T
Q  504 ggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagaca 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004286 ggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagaca 14004385  T
Q  604 gaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagc 703  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||    
T  14004386 gaatttgtgacggttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatag------cggtggtcatcatcgtcgttatttttcagc 14004479  T
Q  704 aatctgaacacacgttcccatatatcatctggtaaatctaaatctgaagaagaagaattcaatt 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004480 aatctgaacacacgttcccatatatcatctggtaaatctaaatctgaagaagaagaattcaatt 14004543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 779 - 831
Target Start/End: Original strand, 14004534 - 14004586
Alignment:
Q  779 gaattcaatttgaaagagtttgttctctgccttttcattggtggtggtgccat 831  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004534 gaattcaatttgaaagagtttgttctctgccttttcattggtggtggtgccat 14004586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 659
Target Start/End: Complemental strand, 34935874 - 34935748
Alignment:
Q  533 gaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttggtgacggagagga 632  Q
    |||||||| ||||| |||||||| || |||| ||| |||  ||| |||||| |||   | ||||| ||| |||||||||||| |||||||||||||||||    
T  34935874 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 34935775  T
Q  633 agtgttttgaggcgacagatagagact 659  Q
    ||||||| |||| |||||| |||||||    
T  34935774 agtgtttggaggagacagagagagact 34935748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  361 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 460  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  461 tt 462  Q
    ||    
T  17635612 tt 17635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 417
Target Start/End: Complemental strand, 18314768 - 18314638
Alignment:
Q  287 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 386  Q
    |||||||||||||| |||||||| |||||||||||||||||   ||||||||||| ||  ||||| | || ||  |||||    ||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatgagagtgaggtcaaagttg 18314669  T
Q  387 taatgttccgagagaaagctcgcaaaccatt 417  Q
    |||| ||  |||||||| |||| || |||||    
T  18314668 taatattttgagagaaaactcgtaagccatt 18314638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  361 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 460  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  461 tt 462  Q
    ||    
T  17642891 tt 17642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 17643062 - 17643025
Alignment:
Q  290 tcgagttcttctagcaaaggaaaacaatcagcaatgag 327  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  17643062 tcgagttcttctagcaaagggaaacaatcagcgatgag 17643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 402 - 821
Target Start/End: Original strand, 1481684 - 1482079
Alignment:
Q  402 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 501  Q
    |||||||||| |||||||| |||||| |||||||||| || | |||||||||||||||||| ||   |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  502 gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttaga 601  Q
    ||||| |   || ||| | || ||||| |  |||||||| ||||||||||||||||  ||||  || |||  | |   ||||| || | ||||||| |||    
T  1481781 gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga 1481877  T
Q  602 cagaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttca 701  Q
     ||||||||| || ||||||||||||||||||||||||||| ||||| || ||||||||||  ||||| || |||||||| |||||          || |    
T  1481878 gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgtagcgtttccggtggtcgtcatc---------cttaa 1481968  T
Q  702 gcaatctgaacacacgttcccatatatcatctggtaaatctaaatctgaagaagaagaattcaattgctgtgaacatgaattcaatttgaaagagtttgt 801  Q
    |||||||||| |||||||||||   |||||| |||||||||||||||   |||||| |||||||||| |||||| |||      |||||| |||||||||    
T  1481969 gcaatctgaagacacgttcccagcaatcatccggtaaatctaaatct---gaagaataattcaattgttgtgaagatg------atttgagagagtttgt 1482059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 1481511 - 1481632
Alignment:
Q  112 gatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatg 211  Q
    |||||||| || |||||||||||||||||||||||| ||| |||||||| || |||||| ||||  ||||| ||||||||||| |||||||||||||| |    
T  1481511 gatgaccttttcgagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaag 1481610  T
Q  212 agtgctaatgaaagagcctcta 233  Q
    ||||| ||||||||||||||||    
T  1481611 agtgccaatgaaagagcctcta 1481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 290 - 459
Target Start/End: Complemental strand, 8186486 - 8186317
Alignment:
Q  290 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 389  Q
    |||||||||||||| |||||||||||||| || |||||   ||  ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||    
T  8186486 tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa 8186387  T
Q  390 tgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgag 459  Q
    | || || |||| | ||||||| ||||| ||||||| | || ||| ||| || |||||||| ||||||||    
T  8186386 tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 8186317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 8186654 - 8186539
Alignment:
Q  116 acctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtg 215  Q
    ||||||| ||||  ||| || ||||| ||||||||| |||||||  || ||||||  |||  ||||| ||| |||||||||||||| |||||||  ||||    
T  8186654 acctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtg 8186555  T
Q  216 ctaatgaaagagcctc 231  Q
    | ||||||||||||||    
T  8186554 ccaatgaaagagcctc 8186539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 450
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  358 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 450  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 532630 - 532692
Alignment:
Q  165 cgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagag 227  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||  |||| |||||||||||    
T  532630 cgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatgaaagag 532692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 7225378 - 7225324
Alignment:
Q  184 agagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtcca 238  Q
    ||||||||||||| | ||||||||||  |||||| ||||||||||||||| ||||    
T  7225378 agagagattaaccctacggagtttgaaaagtgctgatgaaagagcctctactcca 7225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  379 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 462  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  379 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 462  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  379 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 462  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 311 - 419
Target Start/End: Original strand, 6403528 - 6403636
Alignment:
Q  311 aaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgca 410  Q
    |||||||| ||||||||   ||||| || |||||||||||||| || || |||||||  ||| ||||||||||| || |  || || |||||||||||||    
T  6403528 aaacaatcggcaatgagtaagagatgagagctattaagagaatcaatgtcggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgca 6403627  T
Q  411 aaccattag 419  Q
    | |||||||    
T  6403628 acccattag 6403636  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  358 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 457  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  458 agttt 462  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  358 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 457  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  458 a 458  Q
    |    
T  1036570 a 1036570  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 393
Target Start/End: Original strand, 29021726 - 29021829
Alignment:
Q  290 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 389  Q
    ||||||||||| |||||||| || ||||||||||| |||  ||||| ||||||||| || |  | ||||| | ||||| | || ||||||||||| ||||    
T  29021726 tcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaa 29021825  T
Q  390 tgtt 393  Q
    ||||    
T  29021826 tgtt 29021829  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 19467672 - 19467627
Alignment:
Q  188 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 233  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  19467672 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 19467627  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 554
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
Q  521 gagaggtcgagggaggtgagtttggtgaaccttt 554  Q
    |||||||||||||||||||| |||||||||||||    
T  30827961 gagaggtcgagggaggtgagattggtgaaccttt 30827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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