View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_11 (Length: 493)
Name: NF14649_low_11
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 35437777 - 35437284
Alignment:
| Q |
1 |
tgataaatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatctaattcggtctaaattgatctacatttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
35437777 |
tgataaatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatccaattcgacctaaattgatctacatttgaa |
35437678 |
T |
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| Q |
101 |
ggagatagtaacttttcaaacacactatcaataa-tctttataaaagattttaaaaagttacaaaaaattgatttcaaaagttctccatgaacatacatc |
199 |
Q |
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|||||| |||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
35437677 |
ggagatggtaatttttcaaacacaatatcaataaatcttcttaaaagattttaaaaagttacaaaaaattaatttcaaaagttctccatgaacatacctc |
35437578 |
T |
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| Q |
200 |
aattactacccttttataactccgttggtgttcagagattgagaaaaatacaatttatatctcctttgtcaaatatatttttctccttgttgtggtacca |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35437577 |
aatttctacccttttataactccgttggtgttcagagattgagaaaaatacaatttatatctcctttgtcaaatatatttttctccttgttgtggtatca |
35437478 |
T |
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| Q |
300 |
catgccataatcctcgaaagaaagttctaacgaataacatcaagaataaaaaacgaaacatttgaaacactagcaaacttggaattccccccatatatac |
399 |
Q |
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| T |
35437477 |
catgccataatcatcgaaagaaagttctaacgattaacaataagaataaaaaacgaaaaatttgattcactagcaaacttagaatttccgccatatatat |
35437378 |
T |
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| Q |
400 |
aaggggtatgttggacaaaaatttaaatgtacgataaaattaggagttgaagtgacttataaatataaagtgacataaaatacatgtatatata |
493 |
Q |
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| T |
35437377 |
aaggggtttgttggacaaaaatttaaatattcgataaaattagccgttgaagtgacttataaatataaaatgacataaaatacatgtatatata |
35437284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 493
Target Start/End: Complemental strand, 35021019 - 35020959
Alignment:
| Q |
434 |
taaaattaggagttgaagtgacttataaatataaagtgacataaaa-tacatgtatatata |
493 |
Q |
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||||||||| ||||||||| || ||||||||||| |||||||||| |||||||||||||| |
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| T |
35021019 |
taaaattagctgttgaagtggctgataaatataaaatgacataaaagtacatgtatatata |
35020959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 33981626 - 33981688
Alignment:
| Q |
417 |
aaaatttaaatgtacgataaaattaggagttgaagtgacttataaatataaagtgacataaaa |
479 |
Q |
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|||||| |||||| ||||||||||| ||||||||| || ||||||||||| |||||||||| |
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| T |
33981626 |
aaaattgaaatgtttgataaaattagctgttgaagtggctgataaatataaaatgacataaaa |
33981688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 5976816 - 5976771
Alignment:
| Q |
434 |
taaaattaggagttgaagtgacttataaatataaagtgacataaaa |
479 |
Q |
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||||||| | ||||||||| ||||||||||||||| |||||||||| |
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| T |
5976816 |
taaaatttgcagttgaagtaacttataaatataaaatgacataaaa |
5976771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 15525080 - 15525035
Alignment:
| Q |
434 |
taaaattaggagttgaagtgacttataaatataaagtgacataaaa |
479 |
Q |
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| T |
15525080 |
taaaattagatgttgaagtgactgataaatataaaatgacataaaa |
15525035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 46115629 - 46115584
Alignment:
| Q |
434 |
taaaattaggagttgaagtgacttataaatataaagtgacataaaa |
479 |
Q |
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||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
46115629 |
taaaattagctgttgaagtgactgataaatataaaatgacataaaa |
46115584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 46116296 - 46116251
Alignment:
| Q |
434 |
taaaattaggagttgaagtgacttataaatataaagtgacataaaa |
479 |
Q |
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||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
46116296 |
taaaattagctgttgaagtgactgataaatataaaatgacataaaa |
46116251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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