View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_12 (Length: 475)
Name: NF14649_low_12
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 47476924 - 47477372
Alignment:
| Q |
20 |
atgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47476924 |
atgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccaccagtttcttaagttcacctacctatagcaca |
47477023 |
T |
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| Q |
120 |
acaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttataaaggtaggg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47477024 |
acaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagtttataaaggtaggg |
47477123 |
T |
|
| Q |
220 |
gtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacgtgttgccgtgtactatgctcaaatcaaatacta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47477124 |
gtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacttgttgccgtgtactatgctcaaatcaaatacta |
47477223 |
T |
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| Q |
320 |
gttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47477224 |
gttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacattgagacg |
47477323 |
T |
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| Q |
420 |
tttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttg |
468 |
Q |
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| T |
47477324 |
tttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttg |
47477372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 47473630 - 47473874
Alignment:
| Q |
24 |
gctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaa |
123 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473630 |
gctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaa |
47473729 |
T |
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| Q |
124 |
acttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttataaaggtaggggtgt |
223 |
Q |
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| T |
47473730 |
acttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctagaaaaccagcttatcaaggtatgggagt |
47473829 |
T |
|
| Q |
224 |
ctcccatttataatttgagactctcaacaaataatctaaccatat |
268 |
Q |
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| T |
47473830 |
ctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 349 - 466
Target Start/End: Original strand, 47486544 - 47486661
Alignment:
| Q |
349 |
gtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgca |
448 |
Q |
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|||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
47486544 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgca |
47486643 |
T |
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| Q |
449 |
catactccggtgaacctt |
466 |
Q |
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|||| ||||||||||||| |
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| T |
47486644 |
cataatccggtgaacctt |
47486661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 328 - 464
Target Start/End: Original strand, 47473898 - 47474034
Alignment:
| Q |
328 |
taggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
427 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473898 |
taggaagaaatatccttaactgtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
47473997 |
T |
|
| Q |
428 |
tagcttcgcagcttgaacgcacatactccggtgaacc |
464 |
Q |
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||||||| || | || ||||| ||||| |||||||| |
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| T |
47473998 |
tagcttcacaacacgagcgcacgtactcaggtgaacc |
47474034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 47486345 - 47486483
Alignment:
| Q |
24 |
gctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaa |
123 |
Q |
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||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| ||| ||||||||||||||| ||| | || || |
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| T |
47486345 |
gctctccttattgtatctgggctagcttcagatagccctatatacttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaa |
47486444 |
T |
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| Q |
124 |
acttgttaacaacacatctagtgaaataagccaaataat |
162 |
Q |
| |
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|||||||||||| ||||||||| |||||| || ||||| |
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| T |
47486445 |
acttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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