View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14649_low_14 (Length: 451)
Name: NF14649_low_14
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Complemental strand, 1890174 - 1889750
Alignment:
| Q |
8 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890174 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccc |
1890075 |
T |
|
| Q |
108 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890074 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtg |
1889975 |
T |
|
| Q |
208 |
tattgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1889974 |
tattgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccctgagagctgctgtggtagcttgaaaataacatctgctgc |
1889875 |
T |
|
| Q |
308 |
agaatttgaatcatcactatcttcttactttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889874 |
agaatttgaatcatcactatcttcttactttaactc-cgatttttctcaacgcaccaaaatgcttcatagcagaataaaggtgcaacatcactatcttct |
1889776 |
T |
|
| Q |
408 |
tgctatggaaaaaggtacccgggtat |
433 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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|
| T |
1889775 |
tgctatggaaaaaggtacgcgggtat |
1889750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 1888124 - 1887814
Alignment:
| Q |
8 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1888124 |
attatattatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttctttacaaatgacagttttgtatcagcctgcaccaattctgccc |
1888025 |
T |
|
| Q |
108 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtg |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||| |
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| T |
1888024 |
catttgtgatttcgtggactgct----ttccagtcttgcattaccacttttggctgcataaacactgaattttgcacctcaattgtatcgtttcagagtg |
1887929 |
T |
|
| Q |
208 |
tattgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgc |
307 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
1887928 |
tattgttgcgttgcttccaaatactttgcacaattcaagcaaacagcgtcgcttcatcccctgagagctgctgtggtaccttgaaaatagcatctgctgc |
1887829 |
T |
|
| Q |
308 |
agaatttgaatcatc |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1887828 |
agaatttgaatcatc |
1887814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 1896111 - 1895882
Alignment:
| Q |
8 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1896111 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttctttacaaatgacagttttgtatcagcctgcaccaattctgccc |
1896012 |
T |
|
| Q |
108 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1896011 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcataaacactgaattttgcgcctcaattgtattgtttcaaagtg |
1895912 |
T |
|
| Q |
208 |
tattgttgcattgcttccaaatactctgca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1895911 |
tattgttgcattgcttccaaatactctgca |
1895882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 1905557 - 1905328
Alignment:
| Q |
8 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1905557 |
attatactatgtgtagtgtggattgctttcttctctaatataaatgccaatgccttctttacaaatgacagttttgtatcagcctgcaccaattctgccc |
1905458 |
T |
|
| Q |
108 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1905457 |
tgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttggctgcataaacactgaattttgcgcctcaattgtattgtttcaaagtg |
1905358 |
T |
|
| Q |
208 |
tattgttgcattgcttccaaatactctgca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1905357 |
tattgttgcattgcttccaaatactctgca |
1905328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 211 - 433
Target Start/End: Complemental strand, 1895870 - 1895648
Alignment:
| Q |
211 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgcaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1895870 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccctgagagctgctgtggtaccttgaaaataacatctgctgcaga |
1895771 |
T |
|
| Q |
311 |
atttgaatcatcactatcttcttactttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
410 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1895770 |
atttgaatcatcactatcttgttaccttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
1895671 |
T |
|
| Q |
411 |
tatggaaaaaggtacccgggtat |
433 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
1895670 |
tatggaaaaaggtacgcgggtat |
1895648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 211 - 433
Target Start/End: Complemental strand, 1905316 - 1905094
Alignment:
| Q |
211 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgcaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1905316 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccctgagagctgctgtggtaccttgaaaataacatctgctgcaga |
1905217 |
T |
|
| Q |
311 |
atttgaatcatcactatcttcttactttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
410 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1905216 |
atttgaatcatcactatcttgttaccttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
1905117 |
T |
|
| Q |
411 |
tatggaaaaaggtacccgggtat |
433 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
1905116 |
tatggaaaaaggtacgcgggtat |
1905094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 211 - 433
Target Start/End: Original strand, 2932973 - 2933195
Alignment:
| Q |
211 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgcaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2932973 |
tgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgcttcatcccctgagagctgctgtggtaccttgaaaataacatctgctgcaga |
2933072 |
T |
|
| Q |
311 |
atttgaatcatcactatcttcttactttaactctcgatttttctcaacgcgccaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
410 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2933073 |
atttgaatcatcactatcttcttaccttaactctcgatttttctcaacgcggcaaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgc |
2933172 |
T |
|
| Q |
411 |
tatggaaaaaggtacccgggtat |
433 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
2933173 |
tatggaaaaaggtacgcgggtat |
2933195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 60 - 316
Target Start/End: Complemental strand, 1939709 - 1939472
Alignment:
| Q |
60 |
ccttgtttacaaatgacagttttgtatcagcctgcaccaattctgccctgtttgtgatttcgtggactgctagctttccagtcctgcagcaccacttttg |
159 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||||| |
|
|
| T |
1939709 |
ccttctttacaaatgccagttttgtatcagtctgcaccaattctgccccatttgtgatttcgtggactgct----ttccagtcttgcagcaagagttttg |
1939614 |
T |
|
| Q |
160 |
gctgcattaacactgaattttgcgcctcaattgtattgtttcaaagtgtattgttgcattgcttccaaatactctgcaaaatacaagcaaacagcgccgc |
259 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
1939613 |
gctgcataaacaccgaattttgcgcctcaattctattgtt---------------gcgttgcttccaaatactccacaaaatacaagcaaaaagtgccgc |
1939529 |
T |
|
| Q |
260 |
ttcatcccttgagagctgctgtggtagcttgaaaataacatctgctgcagaatttga |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1939528 |
ttcatcccttgagagctgctgtggtaccttgaaaatagcatctgctgcagaatttga |
1939472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 1912526 - 1912464
Alignment:
| Q |
363 |
caaaatgcttcatagcagaataaaggtgcaacatcactatcttcttgctatggaaaaaggtac |
425 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1912526 |
caaaatgcttcatagcagaataaaggtgctacatcactatcttcttgctatggaaaaaggtac |
1912464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 2932917 - 2932961
Alignment:
| Q |
193 |
tattgtttcaaagtgtattgttgcattgcttccaaatactctgca |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2932917 |
tattgtttcaaagtgtattgttgcattgcttccaaatactctgca |
2932961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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