View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_15 (Length: 443)
Name: NF14649_low_15
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 28191081 - 28191501
Alignment:
| Q |
7 |
caaaggcagagacatttatttgatgtaactgattttgtcttggtgaggaagtcagtcaccatcaccaccctctttggaggtgttattttcattgtttatt |
106 |
Q |
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| T |
28191081 |
caaagacagagacatttatttgatgtaactgattttgtcttggtgaggaagtcagtcaccatcaccaccgtctttggaggtgttattttcattgtttatt |
28191180 |
T |
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| Q |
107 |
gtttagaaaacatatttgtgcacattaggtcccttcaggtgattgtttaatcccaggattgaatcccatcgaagccacttcacttatactgacatcatat |
206 |
Q |
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| T |
28191181 |
gtttagaaaacatatttgtgcacattaggtcccttcaggtgattgtttaatcccaggattgaatcccatcgaagccacttcacttatactgacatcatat |
28191280 |
T |
|
| Q |
207 |
cataacctgatttataggcatggcaccaaccatgatataaaacatattgattcgattttttatttctttctgaagaaaatgatacttggcactcctagac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28191281 |
cataacctgatttataggcatggcaccaaccatgatataaaacatattgattcgattttttatttctttctgaagaatatgatacttggcactcctagac |
28191380 |
T |
|
| Q |
307 |
ttcccttaaacagataaactctatcgtcatttgtcactacttttccttctttaatttttcactagactctaacggtttctacggtcacttcactctatgg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191381 |
ttcccttaaacagataaactctatcgtcatttgtcactac-tttccttctttaatttttcactagactctaacggtttctacggtcacttcactctatgg |
28191479 |
T |
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| Q |
407 |
agttgctgtagaggatctgtgt |
428 |
Q |
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|||||||||||||||||||||| |
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| T |
28191480 |
agttgctgtagaggatctgtgt |
28191501 |
T |
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