View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_2 (Length: 671)

Name: NF14649_low_2
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_2
NF14649_low_2
[»] chr8 (30 HSPs)
chr8 (18-554)||(3654820-3655356)
chr8 (555-669)||(16383377-16383491)
chr8 (555-669)||(16056387-16056501)
chr8 (555-669)||(24307779-24307893)
chr8 (555-669)||(30479460-30479574)
chr8 (555-669)||(34307216-34307330)
chr8 (555-669)||(32032725-32032838)
chr8 (555-636)||(24307629-24307710)
chr8 (554-659)||(15048178-15048282)
chr8 (555-659)||(4854859-4854963)
chr8 (557-659)||(10621083-10621185)
chr8 (553-659)||(15197331-15197437)
chr8 (553-659)||(43414577-43414683)
chr8 (560-669)||(5957835-5957944)
chr8 (552-625)||(20074964-20075037)
chr8 (554-659)||(40423939-40424044)
chr8 (555-659)||(12831047-12831151)
chr8 (553-659)||(504117-504223)
chr8 (555-669)||(37038479-37038593)
chr8 (562-659)||(14547929-14548026)
chr8 (599-669)||(32707989-32708061)
chr8 (555-659)||(1179936-1180040)
chr8 (552-659)||(23122593-23122700)
chr8 (552-659)||(34012292-34012399)
chr8 (555-669)||(15258915-15259029)
chr8 (555-669)||(17443825-17443939)
chr8 (576-669)||(8841418-8841511)
chr8 (555-660)||(10284626-10284731)
chr8 (555-659)||(44507083-44507187)
chr8 (555-660)||(42221515-42221620)
[»] chr5 (24 HSPs)
chr5 (555-669)||(2252154-2252268)
chr5 (555-669)||(3921251-3921365)
chr5 (553-659)||(28177773-28177879)
chr5 (555-665)||(39688887-39688997)
chr5 (554-669)||(26720515-26720630)
chr5 (554-669)||(26990264-26990379)
chr5 (555-640)||(6679698-6679783)
chr5 (555-659)||(2740274-2740378)
chr5 (553-669)||(14831812-14831928)
chr5 (555-659)||(15409606-15409710)
chr5 (560-659)||(18520880-18520979)
chr5 (560-620)||(16327906-16327966)
chr5 (551-659)||(40145403-40145511)
chr5 (553-659)||(42414298-42414404)
chr5 (555-620)||(33825359-33825424)
chr5 (559-618)||(10356638-10356698)
chr5 (555-659)||(36732938-36733042)
chr5 (552-659)||(33149634-33149741)
chr5 (555-669)||(31008988-31009102)
chr5 (554-620)||(35785198-35785264)
chr5 (555-620)||(35943927-35943992)
chr5 (562-658)||(13811659-13811755)
chr5 (555-638)||(9603813-9603896)
chr5 (560-614)||(36875644-36875698)
[»] chr6 (15 HSPs)
chr6 (554-669)||(15508010-15508125)
chr6 (555-669)||(15990028-15990142)
chr6 (555-669)||(30341346-30341460)
chr6 (554-669)||(4231547-4231662)
chr6 (555-659)||(31976248-31976352)
chr6 (553-669)||(31953016-31953132)
chr6 (552-659)||(32869675-32869782)
chr6 (560-669)||(28536474-28536581)
chr6 (555-659)||(31110757-31110859)
chr6 (555-626)||(12732482-12732553)
chr6 (560-659)||(22880654-22880753)
chr6 (553-659)||(17598552-17598658)
chr6 (576-659)||(11427639-11427722)
chr6 (576-659)||(31109396-31109479)
chr6 (599-669)||(30870058-30870128)
[»] chr3 (33 HSPs)
chr3 (554-669)||(45058539-45058653)
chr3 (577-669)||(36331315-36331407)
chr3 (548-669)||(42823104-42823225)
chr3 (555-669)||(14623825-14623939)
chr3 (555-659)||(41189760-41189864)
chr3 (552-659)||(26141528-26141635)
chr3 (560-669)||(13898041-13898150)
chr3 (550-659)||(53982006-53982115)
chr3 (554-659)||(20764911-20765016)
chr3 (555-659)||(11347918-11348022)
chr3 (555-659)||(47531865-47531969)
chr3 (555-659)||(51419356-51419460)
chr3 (558-669)||(26754698-26754809)
chr3 (555-669)||(8076393-8076507)
chr3 (554-659)||(33644199-33644304)
chr3 (555-659)||(11907371-11907475)
chr3 (559-659)||(52629304-52629404)
chr3 (555-658)||(27714888-27714991)
chr3 (560-659)||(31456694-31456793)
chr3 (576-659)||(48587087-48587170)
chr3 (555-637)||(24699972-24700054)
chr3 (559-669)||(25395319-25395429)
chr3 (555-669)||(35536626-35536740)
chr3 (555-620)||(11095388-11095453)
chr3 (555-620)||(49607414-49607479)
chr3 (555-669)||(8956762-8956876)
chr3 (555-625)||(36331408-36331478)
chr3 (555-620)||(33118886-33118951)
chr3 (555-620)||(54868930-54868995)
chr3 (560-660)||(30801728-30801828)
chr3 (560-669)||(25407133-25407243)
chr3 (555-625)||(35965804-35965874)
chr3 (555-659)||(17470405-17470509)
[»] chr1 (29 HSPs)
chr1 (554-669)||(50590986-50591101)
chr1 (554-669)||(41608479-41608594)
chr1 (553-669)||(47748441-47748556)
chr1 (555-669)||(5958986-5959100)
chr1 (596-669)||(44332357-44332430)
chr1 (555-659)||(32813247-32813351)
chr1 (555-669)||(37926424-37926538)
chr1 (555-659)||(3000319-3000423)
chr1 (552-659)||(27564731-27564838)
chr1 (555-669)||(45044546-45044660)
chr1 (554-659)||(9474872-9474977)
chr1 (550-659)||(49811523-49811632)
chr1 (555-655)||(2581915-2582015)
chr1 (555-659)||(38595154-38595258)
chr1 (548-659)||(26440727-26440838)
chr1 (555-669)||(51898669-51898783)
chr1 (555-628)||(23597118-23597191)
chr1 (553-669)||(6260868-6260984)
chr1 (553-625)||(37649196-37649268)
chr1 (560-659)||(44548372-44548471)
chr1 (552-638)||(3302550-3302636)
chr1 (555-669)||(7740733-7740847)
chr1 (553-659)||(47452316-47452422)
chr1 (554-659)||(48716278-48716383)
chr1 (577-659)||(8346384-8346466)
chr1 (582-659)||(41758832-41758909)
chr1 (555-659)||(43132-43236)
chr1 (555-659)||(38632317-38632421)
chr1 (555-659)||(50630458-50630562)
[»] chr4 (30 HSPs)
chr4 (555-669)||(8343149-8343263)
chr4 (555-669)||(19670702-19670816)
chr4 (555-669)||(55475191-55475305)
chr4 (555-668)||(32766958-32767071)
chr4 (555-669)||(29547945-29548059)
chr4 (555-669)||(47986208-47986322)
chr4 (555-669)||(50813878-50813992)
chr4 (576-669)||(17983729-17983822)
chr4 (555-669)||(55079699-55079814)
chr4 (552-669)||(18924481-18924598)
chr4 (563-669)||(29589726-29589831)
chr4 (555-669)||(44536732-44536845)
chr4 (554-669)||(11511448-11511563)
chr4 (555-669)||(50052414-50052528)
chr4 (554-659)||(31910191-31910296)
chr4 (554-659)||(6034043-6034148)
chr4 (578-669)||(29977908-29977999)
chr4 (553-620)||(40574777-40574844)
chr4 (550-659)||(48183045-48183154)
chr4 (554-625)||(50526201-50526272)
chr4 (555-659)||(480443-480547)
chr4 (555-659)||(41236347-41236451)
chr4 (555-669)||(48647712-48647826)
chr4 (555-659)||(42044363-42044467)
chr4 (553-620)||(3481652-3481719)
chr4 (576-659)||(24995103-24995186)
chr4 (555-669)||(29239886-29240000)
chr4 (554-659)||(54473529-54473634)
chr4 (555-659)||(29234241-29234345)
chr4 (599-659)||(41823926-41823986)
[»] chr7 (32 HSPs)
chr7 (554-669)||(32564412-32564527)
chr7 (555-669)||(22343361-22343475)
chr7 (555-669)||(41915741-41915855)
chr7 (555-669)||(38044197-38044311)
chr7 (553-669)||(8238210-8238327)
chr7 (555-669)||(7727906-7728020)
chr7 (555-669)||(40846099-40846213)
chr7 (555-645)||(26296644-26296734)
chr7 (556-659)||(35522877-35522980)
chr7 (555-645)||(46374812-46374902)
chr7 (555-659)||(46033797-46033901)
chr7 (555-659)||(8080379-8080483)
chr7 (553-659)||(19329840-19329946)
chr7 (553-658)||(21234399-21234504)
chr7 (555-659)||(3434562-3434666)
chr7 (555-659)||(7389389-7389493)
chr7 (555-669)||(36208173-36208287)
chr7 (555-660)||(35468850-35468955)
chr7 (554-659)||(38267039-38267144)
chr7 (555-659)||(36361909-36362013)
chr7 (555-669)||(19436173-19436287)
chr7 (553-659)||(35137531-35137637)
chr7 (555-659)||(36362026-36362130)
chr7 (555-659)||(38837217-38837321)
chr7 (554-626)||(39255952-39256024)
chr7 (560-659)||(3784000-3784099)
chr7 (555-626)||(18207180-18207251)
chr7 (553-607)||(31735882-31735936)
chr7 (560-638)||(32045842-32045920)
chr7 (555-620)||(40957707-40957772)
chr7 (560-660)||(2318238-2318338)
chr7 (555-659)||(4999510-4999614)
[»] chr2 (32 HSPs)
chr2 (555-669)||(45097721-45097835)
chr2 (553-669)||(43490119-43490235)
chr2 (555-669)||(13365351-13365467)
chr2 (576-669)||(2997473-2997566)
chr2 (555-669)||(38732354-38732468)
chr2 (553-659)||(40613898-40614004)
chr2 (555-659)||(42257193-42257297)
chr2 (609-669)||(3034969-3035029)
chr2 (546-659)||(38273138-38273251)
chr2 (555-659)||(9058480-9058584)
chr2 (555-659)||(5574484-5574588)
chr2 (555-659)||(36168836-36168940)
chr2 (560-659)||(28863460-28863559)
chr2 (555-629)||(15428766-15428840)
chr2 (555-669)||(26891490-26891604)
chr2 (555-660)||(33436095-33436200)
chr2 (555-660)||(33436211-33436316)
chr2 (554-625)||(17820034-17820105)
chr2 (555-659)||(30915463-30915567)
chr2 (560-659)||(19930816-19930915)
chr2 (552-659)||(28381651-28381758)
chr2 (553-659)||(13438341-13438447)
chr2 (555-659)||(2533124-2533227)
chr2 (555-659)||(7465731-7465835)
chr2 (555-659)||(10249378-10249482)
chr2 (555-659)||(17473020-17473124)
chr2 (555-669)||(20700815-20700929)
chr2 (554-620)||(40701477-40701543)
chr2 (553-661)||(27864702-27864810)
chr2 (555-655)||(32505648-32505748)
chr2 (598-645)||(3737986-3738033)
chr2 (555-620)||(38882849-38882913)
[»] scaffold0018 (1 HSPs)
scaffold0018 (580-669)||(152523-152612)
[»] scaffold0316 (1 HSPs)
scaffold0316 (552-671)||(17055-17170)
[»] scaffold0321 (1 HSPs)
scaffold0321 (555-620)||(10144-10209)
[»] scaffold1268 (1 HSPs)
scaffold1268 (553-669)||(915-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (553-669)||(915-1031)


Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 3654820 - 3655356
Alignment:
Q  18 attaacctatggaaattgcaaagggacccactagtatggtccaaccctaatgaatttcaacctgagaggtttttcaatattcatgatcaaattgataatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3654820 attaacctatggaaattgcaaagggacccactagtatggtccaaccctaataaatttcaacctgagaggtttttcaatattcatgatcaaattgataatt 3654919  T
Q  118 ttcagaatcaagactttggatatttgccatttagttatggaagaaggtcatgtgctggtgcaacgtttggaatgcaagtcttgcatttgactttggctag 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3654920 ttcagaatcaagaatttggatatttgccatttagttatggaagaaggtcatgtgctggtgcaacgtttggaatgcaagtcttgcatttgactttggctag 3655019  T
Q  218 gttgattcaagggtttgatataaacacaaaagatggtggtccagttgatatgattgaaggagtaggattggcattgcctaaggaaaatccacttgatgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655020 gttgattcaagggtttgatataaacacaaaagatggtggtccagttgatatgattgaaggagtaggattggcattgcctaaggaaaatccacttgatgtt 3655119  T
Q  318 atgctccaaccacgtctcccattggagctttatgaaagcctttgatatttgtatcaagtgtcaaaagaaaatataaaatatagttttgtttttcttttct 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3655120 atgctccaaccacgtctcccattggaactttatgaaagcctttgatatttgtatcaagtgtcaaaagaaaatataaaatatagttttttttttcttttct 3655219  T
Q  418 gataaaatacattgtttgaataatatgatatgagatgggagctcatgaataatcatatctctagaaatatacaataatgtaatgtactttttattttgga 517  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655220 gataaaatatattgtttgaataatatgatatgagatgggagctcatgaataatcatatctctagaaatatacaataatgtaatgtactttttattttgga 3655319  T
Q  518 aatgtgttaaaatccacatgaatgctagaaattatat 554  Q
    ||||| | || ||||||||||||||||||||||||||    
T  3655320 aatgtctcaagatccacatgaatgctagaaattatat 3655356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 16383377 - 16383491
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 16383476  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  16383477 tctttcttcttctct 16383491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 16056501 - 16056387
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||| ||| ||||| | || |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  16056501 gagttatgatacataaacatccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 16056402  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  16056401 tctttcttcttctct 16056387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 24307893 - 24307779
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| | || |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcccttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacactttc 24307794  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  24307793 tctttcttcttctct 24307779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 30479574 - 30479460
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||| ||| |||||| ||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacactttc 30479475  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  30479474 tctttcttcttctct 30479460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 34307216 - 34307330
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacactttc 34307315  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  34307316 tctttcttcttctct 34307330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 32032725 - 32032838
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| | || |||||| ||||| |||||||||||||||||||||||||| || || |||||| ||||||    
T  32032725 gagttatgatacataaacacccttaggtggcaatacatcc-ttgacatccacacaaaaatctgacatgtggccatatggatcctgcacaagtacactttc 32032823  T
Q  655 tctttcttcttctct 669  Q
    ||||||| |||||||    
T  32032824 tctttctccttctct 32032838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 555 - 636
Target Start/End: Original strand, 24307629 - 24307710
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggacc 636  Q
    |||||||||||||||||||  |||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||    
T  24307629 gagttatgatacataaacacccttaggtggcaatacatccattgacacccacacaaaaatctgatatgtggccatatggacc 24307710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 15048282 - 15048178
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    |||||||||||||||| |||| |||||||||||||| |||| |||||| ||||| |||||||||||| || |||| ||||||||||| |||| | |||||    
T  15048282 tgagttatgatacatagacatccttaggtggcaatacaccctttgaca-ccacacaaaaatctgacacgtagccacatggaccccgcacaagcacacttt 15048184  T
Q  654 ctcttt 659  Q
    ||||||    
T  15048183 ctcttt 15048178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 4854963 - 4854859
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||||||||| |||| || ||||| |||||||||||||| ||||||||| |||||||| || |||| | ||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccctttaacacctacataaaaatctgatatgtggccacatggaccctgcacaagcacactttc 4854864  T
Q  655 tcttt 659  Q
    |||||    
T  4854863 tcttt 4854859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 557 - 659
Target Start/End: Complemental strand, 10621185 - 10621083
Alignment:
Q  557 gttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctc 656  Q
    ||||||||||||| |||| ||||||||| |||| |||| |||||||||||| |||||||||||| || |||| || || ||||| |||| | ||||||||    
T  10621185 gttatgatacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctc 10621086  T
Q  657 ttt 659  Q
    |||    
T  10621085 ttt 10621083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 15197331 - 15197437
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||    
T  15197331 atgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 15197430  T
Q  653 tctcttt 659  Q
    |||||||    
T  15197431 tctcttt 15197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 659
Target Start/End: Complemental strand, 43414683 - 43414577
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||| |||| ||||| |||||| | |||| |||||||||||| |||||||| ||| |||| || ||||| ||||| |||| | ||||    
T  43414683 atgagttatgatacatagacatccttagatggcaacacaccctttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacactt 43414584  T
Q  653 tctcttt 659  Q
    |||||||    
T  43414583 tctcttt 43414577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 669
Target Start/End: Original strand, 5957835 - 5957944
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||| |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||| ||||| |||  | |||||||||||    
T  5957835 atgatacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttctcttt 5957934  T
Q  660 cttcttctct 669  Q
    | ||| ||||    
T  5957935 cctctcctct 5957944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 625
Target Start/End: Complemental strand, 20075037 - 20074964
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    ||||||| |||||||||| |||| |||||||||||||| || | ||||||||||||||||||| ||||| ||||    
T  20075037 tatgagtaatgatacatagacatccttaggtggcaatacactctttgacacccacataaaaatgtgacacgtgg 20074964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 40424044 - 40423939
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| | |  |||||||||||||| |||| |||||| ||||| |||||||||||| || | ||| |||||||||| |||| | |||||    
T  40424044 tgagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 40423945  T
Q  654 ctcttt 659  Q
    ||||||    
T  40423944 ctcttt 40423939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 12831047 - 12831151
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||| ||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 12831146  T
Q  655 tcttt 659  Q
    |||||    
T  12831147 tcttt 12831151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 659
Target Start/End: Complemental strand, 504223 - 504117
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||||||||||||| |||  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | || |    
T  504223 atgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacat 504124  T
Q  653 tctcttt 659  Q
    |||||||    
T  504123 tctcttt 504117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 37038479 - 37038593
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| ||||  ||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 37038578  T
Q  655 tctttcttcttctct 669  Q
    | |||| ||| ||||    
T  37038579 tatttcctctcctct 37038593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 659
Target Start/End: Original strand, 14547929 - 14548026
Alignment:
Q  562 gatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||| |||  |||||||||||||| |||  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||||||||    
T  14547929 gatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 14548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 32708061 - 32707989
Alignment:
Q  599 acacccacataaaaatctgacatgtggccatatggaccccgcgcaagt--atactttctctttcttcttctct 669  Q
    ||||||| | |||||||||| ||||||| ||||||||||||| |||||  | |||||||||||||||||||||    
T  32708061 acacccatacaaaaatctgagatgtggctatatggaccccgcacaagtacacactttctctttcttcttctct 32707989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 1180040 - 1179936
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||||||| |||| |||| |||||||||||| |||||||||||| || | ||| ||||  |||| |||| | ||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttc 1179941  T
Q  655 tcttt 659  Q
    |||||    
T  1179940 tcttt 1179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 23122700 - 23122593
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| |||||||||| |||  |||| ||||||||| |||  |||||||||||| |||||||||||| || | ||  ||||||||||  ||| | |||    
T  23122700 tatgagtaatgatacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacact 23122601  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  23122600 ttctcttt 23122593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 34012399 - 34012292
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| |||||||||| |||  ||||||||| |||| |||| |||||||||||| |||||| ||||| || | ||  |||| ||||| |||| | |||    
T  34012399 tatgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacact 34012300  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  34012299 ttctcttt 34012292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 15259029 - 15258915
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| | |  ||||| |||||||| | || | |||| ||||||||||||||||||||||| ||  ||||||| || |||| | | ||||    
T  15259029 gagttatgatacatagatactcttagatggcaatacatccctggacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttc 15258930  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  15258929 tctttcctctcctct 15258915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 17443825 - 17443939
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||  |||||||| ||||| ||   || |||| |||| ||||||||||||||| | ||| |||||||| | |||  | ||||||    
T  17443825 gagttatgatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaagacactttc 17443924  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||||||||    
T  17443925 tctttcatcttctct 17443939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 8841511 - 8841418
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    ||||||||||| || |||| |||||||||||| |||||||| ||| || | ||  |||||||||| |||| | |||||||||||| ||| ||||    
T  8841511 cttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctct 8841418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 660
Target Start/End: Complemental strand, 10284731 - 10284626
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||  |||| ||| ||||| || | |||||||||||| |||||| ||||| || | ||  |||||||||| |||| | ||||||    
T  10284731 gagttatgatacatagacacccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacactttc 10284632  T
Q  655 tctttc 660  Q
    ||||||    
T  10284631 tctttc 10284626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 44507187 - 44507083
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||||||| |||| || | || ||||||||| |||||||||||| || | ||  |||||||||  |||| ||||||||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatactttc 44507088  T
Q  655 tcttt 659  Q
    |||||    
T  44507087 tcttt 44507083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 660
Target Start/End: Original strand, 42221515 - 42221620
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||| ||||| |  | | |||||||||| |||||||||||| ||   ||||||||||||   |||| | ||||||    
T  42221515 gagtaatgatacatatacatccttaggtgacaatacattcctggacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacactttc 42221614  T
Q  655 tctttc 660  Q
    ||||||    
T  42221615 tctttc 42221620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 2252268 - 2252154
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 2252169  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  2252168 tctttcttcttctct 2252154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 3921365 - 3921251
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  3921365 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 3921266  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  3921265 tctttcttcttctct 3921251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 28177773 - 28177879
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||| |||||||||||| |||| || ||||||||||| |||  | ||||    
T  28177773 atgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacactt 28177872  T
Q  653 tctcttt 659  Q
    |||||||    
T  28177873 tctcttt 28177879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 665
Target Start/End: Complemental strand, 39688997 - 39688887
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||| ||||||||| | || |||||||||||| |||||||||| |||||| |||||| |||||||  ||||| ||||||    
T  39688997 gagttatgatacataaacacccttaagtggcaatacatcccttgacacccacacaaaaatctgatatgtggtcatatgaaccccgcataagtacactttc 39688898  T
Q  655 tctttcttctt 665  Q
    |||||||||||    
T  39688897 tctttcttctt 39688887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 554 - 669
Target Start/End: Original strand, 26720515 - 26720630
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    |||||||||||||||| |||| |||||||||||||| |||| || ||||| ||| |||||||||||| ||||||| ||||| ||||| |||| | |||||    
T  26720515 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26720614  T
Q  654 ctctttcttcttctct 669  Q
    ||||||  ||||||||    
T  26720615 ctcttttctcttctct 26720630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 554 - 669
Target Start/End: Original strand, 26990264 - 26990379
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    |||||||||||||||| |||| |||||||||||||| |||| || ||||| ||| |||||||||||| ||||||| ||||| ||||| |||| | |||||    
T  26990264 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26990363  T
Q  654 ctctttcttcttctct 669  Q
    ||||||  ||||||||    
T  26990364 ctcttttctcttctct 26990379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 555 - 640
Target Start/End: Original strand, 6679698 - 6679783
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgc 640  Q
    ||||||||||||||| ||||  ||||||||||||| |||  |||||||||||| |||||||||||| |||| || |||||||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgc 6679783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 2740274 - 2740378
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 2740373  T
Q  655 tcttt 659  Q
    |||||    
T  2740374 tcttt 2740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 14831812 - 14831928
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||||||||||||| |||| ||||||||||||||||||||||||| || | ||  |||| ||||| |||| | ||||    
T  14831812 atgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactt 14831911  T
Q  653 tctctttcttcttctct 669  Q
    ||| ||| |||| ||||    
T  14831912 tcttttttttctcctct 14831928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 15409710 - 15409606
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||||||| ||||| |  | |||||||||||| |||||||||||| || |||| ||||||||||| |||| | ||| ||    
T  15409710 gagttatgatacatagacatccttaggtgacaatacattctttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactctc 15409611  T
Q  655 tcttt 659  Q
    |||||    
T  15409610 tcttt 15409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 659
Target Start/End: Complemental strand, 18520979 - 18520880
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 18520880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 560 - 620
Target Start/End: Original strand, 16327906 - 16327966
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||||||    
T  16327906 atgatagataaatatccttaggtggcaatacatccattgacacccacataaaaatctgaca 16327966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 551 - 659
Target Start/End: Original strand, 40145403 - 40145511
Alignment:
Q  551 atatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatac 650  Q
    |||||||| |||||||||| |||  |||||||||||||| |||| || ||| ||||| |||||||||||| || | ||  |||||||||| |||| | ||    
T  40145403 atatgagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacac 40145502  T
Q  651 tttctcttt 659  Q
    |||||||||    
T  40145503 tttctcttt 40145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 659
Target Start/End: Complemental strand, 42414404 - 42414298
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||    |||||||||||| |||| |||||||||||| |||||||||||| || | ||| |||||||||| |||| | ||||    
T  42414404 atgagtaatgatacatagacaccagtaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactt 42414305  T
Q  653 tctcttt 659  Q
    | |||||    
T  42414304 tatcttt 42414298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 33825424 - 33825359
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| ||||| |||| |||| |||||||||||||| || | |||||||||||||||||||||||||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactccttgacacccacataaaaatctgaca 33825359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 618
Target Start/End: Original strand, 10356638 - 10356698
Alignment:
Q  559 tatgatacataaacatacttaggtggcaatata-cccattgacacccacataaaaatctga 618  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||||| ||||||||||    
T  10356638 tatgatacatagacatccttaggtggcaatacatcccattgacacccacacaaaaatctga 10356698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 36733042 - 36732938
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||||| |||||| |||| |||||||||||| ||||||||||||  | | ||  |||||||||| |||| | ||||||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactttc 36732943  T
Q  655 tcttt 659  Q
    |||||    
T  36732942 tcttt 36732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 33149741 - 33149634
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| |||||||||| |||  ||||||||| |||| |||| |||||||||||| |||||| ||||| || | ||  |||| ||||| |||| | |||    
T  33149741 tatgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacact 33149642  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  33149641 ttctcttt 33149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 31008988 - 31009102
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||| ||||| |  | |  ||||||||| |||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  31008988 gagttatgatacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 31009087  T
Q  655 tctttcttcttctct 669  Q
    | |||| ||||||||    
T  31009088 tatttcctcttctct 31009102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 620
Target Start/End: Original strand, 35785198 - 35785264
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||| |||||||||| |||  |||||||||||||| |||  |||||||||||| ||||||||||||    
T  35785198 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgaca 35785264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 35943992 - 35943927
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||||||||||||| |||  |||||||||||||| | |  |||||||||||| ||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgaca 35943927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 13811659 - 13811755
Alignment:
Q  562 gatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctt 658  Q
    |||||||| |||  |||||||||||||| | |  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||||||    
T  13811659 gatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctt 13811755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 638
Target Start/End: Original strand, 9603813 - 9603896
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggacccc 638  Q
    |||| |||||||||| |||| ||||||||  |||| || |||| ||||| ||| ||||||||||||  ||| ||||||||||||    
T  9603813 gagtaatgatacatatacatccttaggtgataatacactcattcacacctacacaaaaatctgacacatggtcatatggacccc 9603896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 614
Target Start/End: Complemental strand, 36875698 - 36875644
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaat 614  Q
    |||||||||| |||  |||||||||||||| |||| |||||||||||| ||||||    
T  36875698 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaat 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 15508125 - 15508010
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  15508125 tgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15508026  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  15508025 ctctttcttcttctct 15508010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 15990142 - 15990028
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 15990043  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  15990042 tctttcttcttctct 15990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 30341460 - 30341346
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  30341460 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 30341361  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  30341360 tctttcttcttctct 30341346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 554 - 669
Target Start/End: Original strand, 4231547 - 4231662
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||| |||||||||  ||||||||||||| |||| ||| |||||||| |||||||||||| ||||||||||||||||||| |||||| |||||    
T  4231547 tgagttatgattcataaacatcattaggtggcaatacaccccttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacacttt 4231646  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  4231647 ctctttcttcttctct 4231662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 31976248 - 31976352
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| ||||||||||||||||||| || ||||||||| |||||||||||| |||| || ||| ||||||| |||| | ||||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacactttc 31976347  T
Q  655 tcttt 659  Q
    |||||    
T  31976348 tcttt 31976352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 553 - 669
Target Start/End: Complemental strand, 31953132 - 31953016
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||| ||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||| | | |||  | ||||    
T  31953132 atgagtaatgatagatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacactt 31953033  T
Q  653 tctctttcttcttctct 669  Q
    |||||||| ||||||||    
T  31953032 tctctttcatcttctct 31953016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 659
Target Start/End: Original strand, 32869675 - 32869782
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| | |||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||    
T  32869675 tatgagtaaagatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 32869774  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  32869775 ttctcttt 32869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 560 - 669
Target Start/End: Complemental strand, 28536581 - 28536474
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    ||||||||||||||| |||||||||||||| | || |||||||||||| ||||||||||||   || ||| |||||||| | |||| | |||||||||||    
T  28536581 atgatacataaacatccttaggtggcaatacaacccttgacacccacacaaaaatctgaca--cggtcatgtggaccccacacaagcacactttctcttt 28536484  T
Q  660 cttcttctct 669  Q
      ||||||||    
T  28536483 tatcttctct 28536474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 31110859 - 31110757
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||||||||||||| |||| ||||||| |||  |||||||||||| ||  ||| |||||||| || |||| | ||||||    
T  31110859 gagttatgatacatagacatccttaggtggcaatacaccctttgacactcac--aaaaatctgacacgtaaccacatggaccctgcacaagcacactttc 31110762  T
Q  655 tcttt 659  Q
    |||||    
T  31110761 tcttt 31110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 626
Target Start/End: Original strand, 12732482 - 12732553
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggc 626  Q
    |||| |||||||||| |||| |||| |||||||||||  |||||||||||||| |||||||||||| |||||    
T  12732482 gagtaatgatacatagacattcttaagtggcaatataatcattgacacccacacaaaaatctgacacgtggc 12732553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 659
Target Start/End: Complemental strand, 22880753 - 22880654
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  |||||||||||||| |||| |||||||||||| |||| ||||||| || | ||  |||||||||| |||| | |||||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 22880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 17598552 - 17598658
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||||||||||||| | |  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||    
T  17598552 atgagtaatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacactt 17598651  T
Q  653 tctcttt 659  Q
    |||||||    
T  17598652 tctcttt 17598658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 659
Target Start/End: Original strand, 11427639 - 11427722
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||||||| | || |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | |||||||||||    
T  11427639 cttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 11427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 659
Target Start/End: Complemental strand, 31109479 - 31109396
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||||||| |||| |||||| ||||| |||||||||||| || | ||  | ||||||||  ||||| |||||||||||    
T  31109479 cttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgcaaaagtacactttctcttt 31109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 30870058 - 30870128
Alignment:
Q  599 acacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    ||||||| |||||||||| |||||||| || ||||||||||| |||| | | |||||||||| ||| ||||    
T  30870058 acacccatataaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctct 30870128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 45058653 - 45058539
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  45058653 tgagttatgatacataaacacccttaggtggcaatacaccc-ttgacacccacataaaaatctgacatgtgaccatatggaccccgcacaagtatacttt 45058555  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  45058554 ctctttcttcttctct 45058539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 36331407 - 36331315
Alignment:
Q  577 ttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  36331407 ttaggtggcaatgcaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctct 36331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 548 - 669
Target Start/End: Original strand, 42823104 - 42823225
Alignment:
Q  548 attatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagta 647  Q
    |||||| || ||||||||||||||||   ||| |||| |||| |||| |||||||||||| |||||| |||||||||| ||||||||||||||  |||||    
T  42823104 attataggaattatgatacataaacaccattatgtggtaatacaccccttgacacccacaaaaaaatttgacatgtggtcatatggaccccgcataagta 42823203  T
Q  648 tactttctctttcttcttctct 669  Q
    ||||||||||||||| ||||||    
T  42823204 tactttctctttcttattctct 42823225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 14623939 - 14623825
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||| | | |||| | ||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacactttc 14623840  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||||||||    
T  14623839 tctttcatcttctct 14623825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 41189864 - 41189760
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||||||||||||| | |  ||||||||||||||||||| ||||| ||||||| ||||||||||| |||| | ||||||    
T  41189864 gagttatgatacatatacatccttaggtggcaatacatcatttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagcacactttc 41189765  T
Q  655 tcttt 659  Q
    |||||    
T  41189764 tcttt 41189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 26141635 - 26141528
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    |||||||||||||||||| |||| |||||||||||||| |||| || ||||||||| |||||||||||| |||| || ||||||||| | |||| | |||    
T  26141635 tatgagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacact 26141536  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  26141535 ttctcttt 26141528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 560 - 669
Target Start/End: Complemental strand, 13898150 - 13898041
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||  ||| |||||| | | |||| | |||||||||||    
T  13898150 atgatagataaacatccttaggtggcaatacaccccttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttctcttt 13898051  T
Q  660 cttcttctct 669  Q
    | ||||||||    
T  13898050 catcttctct 13898041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 659
Target Start/End: Original strand, 53982006 - 53982115
Alignment:
Q  550 tatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtata 649  Q
    ||||||||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |    
T  53982006 tatatgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 53982105  T
Q  650 ctttctcttt 659  Q
    ||||||||||    
T  53982106 ctttctcttt 53982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 20765016 - 20764911
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    |||||||||| ||||| |||| ||||||||| |||| || | || ||||||||| |||||||||||| ||||||| ||||||||||  |||| | |||||    
T  20765016 tgagttatgagacatagacatccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtggccacatggaccccgtacaagcacacttt 20764917  T
Q  654 ctcttt 659  Q
    ||||||    
T  20764916 ctcttt 20764911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 11348022 - 11347918
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||||||| ||||| | || |||||| ||||| |||||||||||| ||||||| |||||||| ||  ||| | ||||||    
T  11348022 gagttatgatacatagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacacgtggccacatggaccctgcataagcacactttc 11347923  T
Q  655 tcttt 659  Q
    |||||    
T  11347922 tcttt 11347918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 47531865 - 47531969
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| ||||| |||||||| |||  || ||| ||||| || ||||||||| ||||||||||| ||||||| |||| | ||||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacaccttttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactttc 47531964  T
Q  655 tcttt 659  Q
    |||||    
T  47531965 tcttt 47531969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 51419460 - 51419356
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| ||||| || ||||| | || || ||||||||| |||||||||||| ||||||| || |||||||| |||| | ||||||    
T  51419460 gagttatgatacatagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttc 51419361  T
Q  655 tcttt 659  Q
    |||||    
T  51419360 tcttt 51419356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 669
Target Start/End: Original strand, 26754698 - 26754809
Alignment:
Q  558 ttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctct 657  Q
    ||||||| |||| |||  |||||||||||||| |||| | |||| ||||| ||||||||||||||||| || ||||||||||| |||| | | |||||||    
T  26754698 ttatgattcatagacacccttaggtggcaatacacccttggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctct 26754797  T
Q  658 ttcttcttctct 669  Q
    ||| ||| ||||    
T  26754798 ttcctctcctct 26754809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 8076393 - 8076507
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| ||||||||||||||  ||||||||||| || |||| |||||||||||| |||||||| ||| || | ||  |||||||||| |||| | ||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 8076492  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  8076493 tctttcctctcctct 8076507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 33644199 - 33644304
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  ||| |||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||    
T  33644199 tgagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 33644298  T
Q  654 ctcttt 659  Q
    ||||||    
T  33644299 ctcttt 33644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 11907371 - 11907475
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||  |||||||| ||||| || | |  |||| |||| ||||||||||||||||| |||||||||||||| |||| | | ||||    
T  11907371 gagttatgatacatagacacccttaggtgacaatacacacctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacattttc 11907470  T
Q  655 tcttt 659  Q
    |||||    
T  11907471 tcttt 11907475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 559 - 659
Target Start/End: Original strand, 52629304 - 52629404
Alignment:
Q  559 tatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctt 658  Q
    ||||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||  |||| | ||||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctctt 52629403  T
Q  659 t 659  Q
    |    
T  52629404 t 52629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 658
Target Start/End: Complemental strand, 27714991 - 27714888
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||   |||||||| |||| |||| |||||||||||| |||||||||||| || | ||| |||||||||| |||| | ||||||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 27714892  T
Q  655 tctt 658  Q
    ||||    
T  27714891 tctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 659
Target Start/End: Original strand, 31456694 - 31456793
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  | |||| ||||||| |||| |||||||||||| |||||||||||| || | ||| |||||||||| |||| | |||||||||||    
T  31456694 atgatacatagacacccataggcggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 31456793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 576 - 659
Target Start/End: Complemental strand, 48587170 - 48587087
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||||||| |||| |||||||| |||||||||||||||| || | ||  |||| ||||| |||||| |||||||||||    
T  48587170 cttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttt 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 637
Target Start/End: Complemental strand, 24700054 - 24699972
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccc 637  Q
    |||| |||||||||| |||| ||||| |||||||| |||  |||||||||||||||||||||| || |||||||  |||||||    
T  24700054 gagtaatgatacatagacatccttagttggcaatacaccttttgacacccacataaaaatctggcacgtggccacgtggaccc 24699972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 669
Target Start/End: Complemental strand, 25395429 - 25395319
Alignment:
Q  559 tatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctt 658  Q
    |||||||||||||||| |||| ||||| ||| | || || | ||||||| |||||||||||||||||| |||| |||||| | |||  | | ||||||||    
T  25395429 tatgatacataaacatccttatgtggccatacatcccttaatacccacacaaaaatctgacatgtggctatatagaccccacacaaacacattttctctt 25395330  T
Q  659 tcttcttctct 669  Q
    || ||||||||    
T  25395329 tcatcttctct 25395319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 35536626 - 35536740
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||| ||||||||| |||  ||||||||||||||||||| ||||| |||| ||| ||||||   | |||| | |||| |    
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccatttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttcc 35536725  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||||||||    
T  35536726 tctttcatcttctct 35536740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 11095453 - 11095388
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||||||| ||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 11095388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 620
Target Start/End: Original strand, 49607414 - 49607479
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||||||| ||||||||||||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 49607479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 8956762 - 8956876
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||| ||||||||| | || ||||||||||||||||||| ||||| |||  ||| ||||||   | |||| | |||| |    
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcctttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttcc 8956861  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||||||||    
T  8956862 tctttcatcttctct 8956876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 625
Target Start/End: Complemental strand, 36331478 - 36331408
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    |||||||||||||||||||  ||||| |||||||  |||| |||||| ||||| ||||||||| |||||||    
T  36331478 gagttatgatacataaacacccttagatggcaatgcaccccttgacatccacacaaaaatctggcatgtgg 36331408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 33118951 - 33118886
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||||||||||||| |||  |||||||| ||||| |||| |||||||||||| |||||| |||||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatttgaca 33118886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 54868995 - 54868930
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| |||||||||| |||  |||||||||||||| |||  |||||||||||| ||||||||||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgaca 54868930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 660
Target Start/End: Complemental strand, 30801828 - 30801728
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  ||||||||  |||| |||| |||| ||||||| |||||| |||||||| | |||||||||||| | |||| | | |||||||||    
T  30801828 atgatacatagacacccttaggtgataatacaccctttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctcttt 30801729  T
Q  660 c 660  Q
    |    
T  30801728 c 30801728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 669
Target Start/End: Complemental strand, 25407243 - 25407133
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccaca-taaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctt 658  Q
    |||||||||| |||  | ||||||||||||||||| ||||||| ||||  |||||||||||| |||  |||||||| ||| | |||  | ||||||||||    
T  25407243 atgatacatacacaaccataggtggcaatataccccttgacacacacacaaaaaatctgacacgtgatcatatggatcccacacaaacacactttctctt 25407144  T
Q  659 tcttcttctct 669  Q
    || ||| ||||    
T  25407143 tcatctcctct 25407133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 625
Target Start/End: Complemental strand, 35965874 - 35965804
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    |||| |||||||||| |||| |||| |||  |||| | || ||||||||||||||||||||||||| ||||    
T  35965874 gagtaatgatacatatacatccttaagtgataatacatcctttgacacccacataaaaatctgacacgtgg 35965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 17470405 - 17470509
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||   ||||||||||||| |||  || ||||||||| |||||||||||| || | ||  |||||||| | |||| | ||||||    
T  17470405 gagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 17470504  T
Q  655 tcttt 659  Q
    |||||    
T  17470505 tcttt 17470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 50591101 - 50590986
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  50591101 tgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 50591002  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  50591001 ctctttcttcttctct 50590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 41608594 - 41608479
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||  |||||| |||||    
T  41608594 tgagttatgatacataaacatccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacacttt 41608495  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  41608494 ctctttcttcttctct 41608479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 47748441 - 47748556
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||||| |  |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  47748441 atgagttatgatacataaatacccttaggtggcaatacaccc-ttgacacccatataaaaatctgacatgtggccatatggatcccgcacaagtatactt 47748539  T
Q  653 tctctttcttcttctct 669  Q
    |||||||||||||||||    
T  47748540 tctctttcttcttctct 47748556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 5959100 - 5958986
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||| ||||||||| |||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  5959100 gagttatgatacataaacacccttaagtggcaatacacctcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttc 5959001  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  5959000 tctttcttcttctct 5958986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 44332430 - 44332357
Alignment:
Q  596 ttgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  44332430 ttgacacccacataaaaatctgacatgtggccctatggaccccgcacaagtatactttctctttcttcttctct 44332357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 32813247 - 32813351
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||||||||||||| |||| || ||||||||| |||||||||||| |||| || ||||||||||| |||| | ||||||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacactttc 32813346  T
Q  655 tcttt 659  Q
    |||||    
T  32813347 tcttt 32813351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 37926538 - 37926424
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| | ||  ||||||||||||| | |  || |||||||||||||||||||||| ||||||| ||||| ||||  |||||| ||||||    
T  37926538 gagttatgatacatagatatctttaggtggcaatacatcttttaacacccacataaaaatctgacacgtggccacatggatcccgtacaagtacactttc 37926439  T
Q  655 tctttcttcttctct 669  Q
    |||||  ||||||||    
T  37926438 tcttttctcttctct 37926424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 3000319 - 3000423
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| ||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||  |||| | ||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 3000418  T
Q  655 tcttt 659  Q
    |||||    
T  3000419 tcttt 3000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 27564838 - 27564731
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| |||||||||| |||| |||||||||||||| |||  |||||||||||| |||||||||||| ||   ||  |||||||||| |||| | |||    
T  27564838 tatgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacact 27564739  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  27564738 ttctcttt 27564731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 45044660 - 45044546
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |  | |||||||||||||| |||  |||||||||| | ||||||||||||||| |||| ||||||||||| |||  | | ||||    
T  45044660 gagttatgatacatacatttccttaggtggcaatacaccatttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaaacacattttc 45044561  T
Q  655 tctttcttcttctct 669  Q
    |||||  ||||||||    
T  45044560 tcttttctcttctct 45044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 9474977 - 9474872
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||  | |||||    
T  9474977 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacacttt 9474878  T
Q  654 ctcttt 659  Q
    ||||||    
T  9474877 ctcttt 9474872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 659
Target Start/End: Complemental strand, 49811632 - 49811523
Alignment:
Q  550 tatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtata 649  Q
    |||| ||||||||||| ||| |||| |||||||| ||||| |||  |||||| ||||| |||||||||||| || ||||||| ||| |||| |||| | |    
T  49811632 tataagagttatgatagatagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacacgtagccatatagactccgcacaagcaca 49811533  T
Q  650 ctttctcttt 659  Q
    ||||||||||    
T  49811532 ctttctcttt 49811523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 655
Target Start/End: Original strand, 2581915 - 2582015
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 2582014  T
Q  655 t 655  Q
    |    
T  2582015 t 2582015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 38595154 - 38595258
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| ||||||||||||||   ||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||  |||| | ||||||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 38595253  T
Q  655 tcttt 659  Q
    |||||    
T  38595254 tcttt 38595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 659
Target Start/End: Original strand, 26440727 - 26440838
Alignment:
Q  548 attatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagta 647  Q
    |||| |||||||| |||| ||| |||| ||||| || ||||| |||| || ||||||||| |||||||||||| ||||||| ||||| |||||  ||| |    
T  26440727 attaaatgagttaggatagatagacatccttagatgacaatacaccctttaacacccacacaaaaatctgacacgtggccacatggatcccgcataagca 26440826  T
Q  648 tactttctcttt 659  Q
     |||||||||||    
T  26440827 cactttctcttt 26440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 51898783 - 51898669
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| ||||  ||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 51898684  T
Q  655 tctttcttcttctct 669  Q
    | |||| ||| ||||    
T  51898683 tatttcctctcctct 51898669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 628
Target Start/End: Complemental strand, 23597191 - 23597118
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggcca 628  Q
    |||| |||||||||| ||||  ||||||||||||| || | |||| |||||||||||||||||||| |||||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactctttgatacccacataaaaatctgacacgtggcca 23597118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 6260868 - 6260984
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||| ||| | || ||||||||| |||| |||| |  |||||||||||||||||| |||||||| ||  ||||||||||  ||| | | ||    
T  6260868 atgagttatgatagatagatatccttaggtggtaatacacccctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacattt 6260967  T
Q  653 tctctttcttcttctct 669  Q
    ||| |||||||| ||||    
T  6260968 tctatttcttctcctct 6260984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 625
Target Start/End: Original strand, 37649196 - 37649268
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    |||||| |||||||||| ||||  ||||||||||||| || | |||||||||||| |||||||||||| ||||    
T  37649196 atgagtaatgatacatagacatctttaggtggcaatacactctttgacacccacacaaaaatctgacacgtgg 37649268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 659
Target Start/End: Complemental strand, 44548471 - 44548372
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| ||||  ||||||||||||| |||  |||| ||||||| |||||||||||| || | ||  |||||||||| |||| | |||||||||||    
T  44548471 atgatacatagacatctttaggtggcaatacaccatttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 44548372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 638
Target Start/End: Complemental strand, 3302636 - 3302550
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggacccc 638  Q
    ||||||| |||||||||| |||| |||||||| |||||||  | | |||||||||| |||||||||||| ||   ||||||||||||    
T  3302636 tatgagtaatgatacatatacatccttaggtgacaatatattcctggacacccacacaaaaatctgacacgtaatcatatggacccc 3302550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 7740733 - 7740847
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||  |||  |||| ||| ||||| | ||||||||||| |||||||||| ||||| ||||| || |||||||| | ||| |||| ||||    
T  7740733 gagttatgatacattgacaaccttatgtgacaatacatccattgacacctacataaaaatatgacacgtggctatgtggaccccacacaaatatattttc 7740832  T
Q  655 tctttcttcttctct 669  Q
    | |||| ||| ||||    
T  7740833 tttttcatctcctct 7740847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 553 - 659
Target Start/End: Complemental strand, 47452422 - 47452316
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  ||||||||| |||| |||| |||||||||||| |||||||| ||| || | ||  |||| ||||| |||| | ||||    
T  47452422 atgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactt 47452323  T
Q  653 tctcttt 659  Q
    |||||||    
T  47452322 tctcttt 47452316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 48716383 - 48716278
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||||||||||||| |||  |||||| ||||| |||||||||||| || | ||  |||||||||| |||| | |||||    
T  48716383 tgagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48716284  T
Q  654 ctcttt 659  Q
     |||||    
T  48716283 atcttt 48716278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 659
Target Start/End: Complemental strand, 8346466 - 8346384
Alignment:
Q  577 ttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    ||||||||||||| |||  |||||||||||| |||||||||||| || | ||  ||||||| || |||| | |||||||||||    
T  8346466 ttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacactttctcttt 8346384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 659
Target Start/End: Original strand, 41758832 - 41758909
Alignment:
Q  582 tggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||| |||| |||||| ||||| |||||||||||| || | || ||||||||||| |||  | |||||||||||    
T  41758832 tggcaatacaccctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttctcttt 41758909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 43132 - 43236
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||| | ||||| | || |||||||||||| |||||||||||| || | ||  ||||| |||| |||| | ||||||    
T  43132 gagtaatgatacatagacagtcttaggagacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacactttc 43231  T
Q  655 tcttt 659  Q
    |||||    
T  43232 tcttt 43236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 38632421 - 38632317
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||  || ||| ||||| |||||||||||| || | ||  |||||||||| |||| | |||||     
T  38632421 gagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttt 38632322  T
Q  655 tcttt 659  Q
    |||||    
T  38632321 tcttt 38632317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 50630458 - 50630562
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| | |  |||||||||||||| | || |||  ||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  50630458 gagtaatgatacatagatacccttaggtggcaatacatcctttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 50630557  T
Q  655 tcttt 659  Q
    |||||    
T  50630558 tcttt 50630562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 8343263 - 8343149
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgacacctacataaaaatctgacatgtggccatatggaccccgcataagtatactttc 8343164  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  8343163 tctttcttcttctct 8343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 19670816 - 19670702
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 19670717  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  19670716 tctttcttcttctct 19670702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 55475191 - 55475305
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||  ||||| ||||||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacactttc 55475290  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  55475291 tctttcttcttctct 55475305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 555 - 668
Target Start/End: Original strand, 32766958 - 32767071
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||| || |||||| ||||||    
T  32766958 gagttatgatacataaacactcttaggtggcaatacaccccttgacacccatacaaaaatctgacatgtggccatatggaccctgcacaagtacactttc 32767057  T
Q  655 tctttcttcttctc 668  Q
    ||||||||||||||    
T  32767058 tctttcttcttctc 32767071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 29548059 - 29547945
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| | || |||||||||||| |||||||||||||||||||||||||| |||||  ||||| |||||     
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcccttgacacccacacaaaaatctgacatgtggccatatggatcccgcataagtacactttt 29547960  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  29547959 tctttcttcttctct 29547945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 47986208 - 47986322
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| | || |||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  47986208 gagttatgatacataaacacccttaggtggcaatacatcccttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 47986307  T
Q  655 tctttcttcttctct 669  Q
    |||||||| ||||||    
T  47986308 tctttcttattctct 47986322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 50813992 - 50813878
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  ||||||||| |||| |||| |||||||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||    
T  50813992 gagttatgatacataaacactcttaggtggtaatacaccccttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacactttc 50813893  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  50813892 tctttcttcttctct 50813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 17983822 - 17983729
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  17983822 cttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctct 17983729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 55079814 - 55079699
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatgga-ccccgcgcaagtatacttt 653  Q
    |||||||||||||||||||  |||||||||||||| |||  |||||||||| | |||||||||||||||||||||||||| |||| | |||||| |||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacctcttgacacccatacaaaaatctgacatgtggccatatggacccccacacaagtacacttt 55079715  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  55079714 ctctttcttcttctct 55079699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 552 - 669
Target Start/End: Complemental strand, 18924598 - 18924481
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||||||||| |||||| |  |||||||||||||| |||| |||| | ||||| |||||||||||||||||| ||||| || |||| |||||| |||    
T  18924598 tatgagttatgatccataaatacccttaggtggcaatacaccccttgatatccacacaaaaatctgacatgtggcaatatgaactccgcacaagtacact 18924499  T
Q  652 ttctctttcttcttctct 669  Q
    ||||||||||||||||||    
T  18924498 ttctctttcttcttctct 18924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 563 - 669
Target Start/End: Complemental strand, 29589831 - 29589726
Alignment:
Q  563 atacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttctt 662  Q
    |||||||||||  ||||| || ||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| | |||||| ||||||||||||||    
T  29589831 atacataaacacccttagttg-caatacaccccttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctctttctt 29589733  T
Q  663 cttctct 669  Q
    |||||||    
T  29589732 cttctct 29589726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 44536845 - 44536732
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||   ||||||||||||| |||| |||||| ||||| ||||||||||||||||| ||||| |||||| |  ||||| ||||||    
T  44536845 gagttatgatacataaacacttttaggtggcaatacaccc-ttgacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacactttc 44536747  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  44536746 tctttcttcttctct 44536732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 11511563 - 11511448
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||||||||||||| |||| ||||||||||||||||||||||||| || | ||  |||||||||| |||| | |||||    
T  11511563 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 11511464  T
Q  654 ctctttcttcttctct 669  Q
    ||||||  ||||||||    
T  11511463 ctcttttctcttctct 11511448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 50052528 - 50052414
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 50052429  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  50052428 tctttcctctcctct 50052414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 31910191 - 31910296
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    |||||||||||||||| |||| |||||||| ||||| || | |||||||||||| ||||||||||||  | |||| ||||||||||| |||| | |||||    
T  31910191 tgagttatgatacatagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacacttt 31910290  T
Q  654 ctcttt 659  Q
    ||||||    
T  31910291 ctcttt 31910296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 6034043 - 6034148
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||||||||||||| |||| |||||||||||| ||||||||||||||| | ||  |||| ||||| |||| | |||||    
T  6034043 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacacttt 6034142  T
Q  654 ctcttt 659  Q
    ||||||    
T  6034143 ctcttt 6034148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 669
Target Start/End: Original strand, 29977908 - 29977999
Alignment:
Q  578 taggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    |||||||||||| |||| || ||||||||| |||||||||||| || | |||||||||||| | |||| | |||||||||||| ||||||||    
T  29977908 taggtggcaatacaccccttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctctttcatcttctct 29977999  T

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Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 620
Target Start/End: Original strand, 40574777 - 40574844
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||||||||||||||| |||| ||||||||| |||| |||| |||||||||||| ||||||||||||    
T  40574777 atgagttatgatacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgaca 40574844  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 659
Target Start/End: Complemental strand, 48183154 - 48183045
Alignment:
Q  550 tatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtata 649  Q
    |||| |||| |||||||||| |||  |||| ||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |    
T  48183154 tataagagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 48183055  T
Q  650 ctttctcttt 659  Q
    ||||||||||    
T  48183054 ctttctcttt 48183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 625
Target Start/End: Complemental strand, 50526272 - 50526201
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    ||||| |||||||||| ||||  ||||||||||||| |||| |||||||||||| |||||||||||| ||||    
T  50526272 tgagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtgg 50526201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 480547 - 480443
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||| ||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||  |||| | ||||||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 480448  T
Q  655 tcttt 659  Q
    |||||    
T  480447 tcttt 480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 41236347 - 41236451
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||  |||||| ||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 41236446  T
Q  655 tcttt 659  Q
    |||||    
T  41236447 tcttt 41236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 48647826 - 48647712
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||| |||||||||| |||||||  ||||| |||  || |||||||||||||||||| ||| |||| ||  ||||| |||| |||| | | ||||    
T  48647826 gagttatgacacataaacatccttaggtaacaatacacctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttc 48647727  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  48647726 tctttcctctcctct 48647712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 42044467 - 42044363
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| | || |  ||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  42044467 gagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 42044368  T
Q  655 tcttt 659  Q
    |||||    
T  42044367 tcttt 42044363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 620
Target Start/End: Original strand, 3481652 - 3481719
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||||| |||||||||| |||   ||||||||||||| || | |||||||||||| ||||||||||||    
T  3481652 atgagtaatgatacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgaca 3481719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 659
Target Start/End: Complemental strand, 24995186 - 24995103
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    ||||| |||||||| |||| ||||||||||||||||||| ||||| || | ||  |||||||||| |||| | | |||||||||    
T  24995186 cttagatggcaatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttt 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 29239886 - 29240000
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||  |||||| ||||| |||||||| ||| || | ||  |||||||| | |||| | ||||||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacactttc 29239985  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  29239986 tctttcctctcctct 29240000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 659
Target Start/End: Complemental strand, 54473634 - 54473529
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||||||| ||||| |||  |||||||||||| |||||||| ||| || | ||  |||||||||| |||| | |||||    
T  54473634 tgagtaatgatacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 54473535  T
Q  654 ctcttt 659  Q
     |||||    
T  54473534 atcttt 54473529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 29234345 - 29234241
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||| |||||||| |||| |||| |||  || |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 29234246  T
Q  655 tcttt 659  Q
    |||||    
T  29234245 tcttt 29234241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 599 - 659
Target Start/End: Original strand, 41823926 - 41823986
Alignment:
Q  599 acacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    ||||||||| |||||||||||| || | || ||||||||||| |||| | |||||||||||    
T  41823926 acacccacacaaaaatctgacacgtagtcacatggaccccgcacaagcacactttctcttt 41823986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 554 - 669
Target Start/End: Complemental strand, 32564527 - 32564412
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| || |||||    
T  32564527 tgagttatgatacataaacattcttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacacttt 32564428  T
Q  654 ctctttcttcttctct 669  Q
    ||||||||||||||||    
T  32564427 ctctttcttcttctct 32564412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 22343361 - 22343475
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttc 22343460  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  22343461 tctttcttcttctct 22343475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 41915741 - 41915855
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccccttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 41915840  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  41915841 tctttcttcttctct 41915855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 38044197 - 38044311
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||| ||||| ||||||||||||||| |||||||||||||||| |||||| ||||||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccccttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacactttc 38044296  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  38044297 tctttcttcttctct 38044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 8238210 - 8238327
Alignment:
Q  553 atgagttatgatacataaacatact-taggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    |||||||||||||||||||||  || |||||||||||| |||| |||||||||||| ||||||||||||||| | |||||||||||||| |||||| |||    
T  8238210 atgagttatgatacataaacaccctgtaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacact 8238309  T
Q  652 ttctctttcttcttctct 669  Q
    ||||||||||||||||||    
T  8238310 ttctctttcttcttctct 8238327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 7727906 - 7728020
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  ||||||||| |||| |||  ||||||  |||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  7727906 gagttatgatacataaacacccttaggtggtaatacacctcttgacattcacataaaaatctgacatgtggtcatatggaccccgcacaagtacactttc 7728005  T
Q  655 tctttcttcttctct 669  Q
    | |||||||||||||    
T  7728006 tgtttcttcttctct 7728020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 40846213 - 40846099
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| ||||| |||||||| |||||| |  ||||||||||||| ||| || ||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacactttc 40846114  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  40846113 tctttcttcttctct 40846099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 26296644 - 26296734
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaag 645  Q
    ||||||||||||||| |||| |||||||| |||||||||| || ||| |||||||||||||||| | ||||||||||||||||||| ||||    
T  26296644 gagttatgatacatagacatccttaggtgacaatataccctttaacatccacataaaaatctgatacgtggccatatggaccccgcacaag 26296734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 659
Target Start/End: Original strand, 35522877 - 35522980
Alignment:
Q  556 agttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttct 655  Q
    |||||||||||||| |||| |||| ||||||||| |||  || ||||||||| |||||||||||| ||||||||||||| ||||| |||| | |||||||    
T  35522877 agttatgatacatagacatccttaagtggcaatacaccatttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttct 35522976  T
Q  656 cttt 659  Q
    ||||    
T  35522977 cttt 35522980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 645
Target Start/End: Complemental strand, 46374902 - 46374812
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaag 645  Q
    ||||||||||||||| |||| |||||||||||| | |||| || ||||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaag 46374812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 46033901 - 46033797
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| | || |||||||||||||| |||| || |||||||||||||||||||||| |||| || ||| || |||| |||| ||| ||||    
T  46033901 gagttatgatacatagatattcttaggtggcaatacaccctttaacacccacataaaaatctgacacgtggtcacatgaactccgcacaagcatattttc 46033802  T
Q  655 tcttt 659  Q
    |||||    
T  46033801 tcttt 46033797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 8080483 - 8080379
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||| |||||||||||||||| || | ||  |||||||||| |||| | ||||||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 8080384  T
Q  655 tcttt 659  Q
    |||||    
T  8080383 tcttt 8080379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 19329840 - 19329946
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||| |||||||||||||| |||  |||||||||||| |||||||||||| ||   ||  |||||||||| |||| | ||||    
T  19329840 atgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactt 19329939  T
Q  653 tctcttt 659  Q
    |||||||    
T  19329940 tctcttt 19329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 553 - 658
Target Start/End: Original strand, 21234399 - 21234504
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||| |||| |||||||| ||||| |||| ||||||| |||| |||||| ||||| || |||| ||| ||||||| |||| | | ||    
T  21234399 atgagttatgatacatagacatccttaggtgacaatacaccctttgacactcacacaaaaatttgacacgtagccacatgtaccccgcacaagcacattt 21234498  T
Q  653 tctctt 658  Q
    ||||||    
T  21234499 tctctt 21234504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 3434562 - 3434666
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||||||||| |||| |||||||||||| ||||| |||||| || | ||  |||| ||||| |||| | ||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacactttc 3434661  T
Q  655 tcttt 659  Q
    |||||    
T  3434662 tcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 7389389 - 7389493
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| || | |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 7389488  T
Q  655 tcttt 659  Q
    |||||    
T  7389489 tcttt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 36208173 - 36208287
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||  ||||||||| |||| |  |||||||||||||| ||||| ||||||||||| ||  ||||||| || |||| | | ||||    
T  36208173 gagttatgatacatagacacccttaggtggtaatacattcattgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttc 36208272  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  36208273 tctttcctctcctct 36208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 660
Target Start/End: Complemental strand, 35468955 - 35468850
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| ||||| |||||||| | |  ||||||||||||||||||||| | ||||| |||| ||||||| || |||  | ||||||    
T  35468955 gagtaatgatacatagacatccttagatggcaatacatcatttgacacccacataaaaatctaatatgtgaccatgtggaccctgcacaaacacactttc 35468856  T
Q  655 tctttc 660  Q
    ||||||    
T  35468855 tctttc 35468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 38267039 - 38267144
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatacttt 653  Q
    ||||| |||||||||| |||  |||| ||| ||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||    
T  38267039 tgagtaatgatacatagacacccttatgtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38267138  T
Q  654 ctcttt 659  Q
    ||||||    
T  38267139 ctcttt 38267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 36362013 - 36361909
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| | || |||||||||||| |||||||||||| || | ||  |||||||| | |||| | ||||||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 36361914  T
Q  655 tcttt 659  Q
    |||||    
T  36361913 tcttt 36361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 19436287 - 19436173
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||||||| ||||| |||  |||||||||||| |||||||||||| || | ||  |||| |||||  ||| | ||||||    
T  19436287 gagtaatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttc 19436188  T
Q  655 tctttcttcttctct 669  Q
    |||||  ||||||||    
T  19436187 tcttttctcttctct 19436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 35137531 - 35137637
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||| ||| |||  |||||||||||||| |||| |||||||||||| |||||||| ||| || | ||  |||||||||| |||  | ||||    
T  35137531 atgagtaatgataaatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacactt 35137630  T
Q  653 tctcttt 659  Q
    |||||||    
T  35137631 tctcttt 35137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 36362026 - 36362130
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||||||| |||| | || |||||||||||| |||||||||||| || | ||  |||||||| | |||| | ||||||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 36362125  T
Q  655 tcttt 659  Q
    |||||    
T  36362126 tcttt 36362130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 38837217 - 38837321
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| |  ||||| ||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 38837316  T
Q  655 tcttt 659  Q
    |||||    
T  38837317 tcttt 38837321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 626
Target Start/End: Complemental strand, 39256024 - 39255952
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggc 626  Q
    |||||||||||||||| |||  |||||||||||||| |||  |||| ||||| | |||||||||||| |||||    
T  39256024 tgagttatgatacatagacaaccttaggtggcaatacaccacttgatacccatacaaaaatctgacacgtggc 39255952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 659
Target Start/End: Original strand, 3784000 - 3784099
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  |||||||||||||| | |  |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | |||||||||||    
T  3784000 atgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 3784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 626
Target Start/End: Original strand, 18207180 - 18207251
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggc 626  Q
    ||||||||||||||| |||  |||||||||||||| |||  |||||||||| | |||||||| ||| |||||    
T  18207180 gagttatgatacatagacaaccttaggtggcaatacacctcttgacacccatacaaaaatctaacacgtggc 18207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 607
Target Start/End: Original strand, 31735882 - 31735936
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccaca 607  Q
    ||||||||||||||||| |||| |||||||||||||| || | || |||||||||    
T  31735882 atgagttatgatacatagacatccttaggtggcaatacactctttaacacccaca 31735936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 638
Target Start/End: Original strand, 32045842 - 32045920
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggacccc 638  Q
    |||||||||| | || ||||||||||||||||    | ||||||||||||||||||||||| ||  |||||| ||||||    
T  32045842 atgatacatatatattcttaggtggcaatatattactggacacccacataaaaatctgacacgtaaccatatagacccc 32045920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 620
Target Start/End: Original strand, 40957707 - 40957772
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| |||||||||| |||  |||||||||||||| || | |||| ||||||| ||||||||||||    
T  40957707 gagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgaca 40957772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 660
Target Start/End: Complemental strand, 2318338 - 2318238
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    ||||||||| ||||  | |||||||||| | |||  |||||||||||| ||||||||||| ||||| ||  |||||||  |  ||| |||||||||||||    
T  2318338 atgatacattaacaaccataggtggcaagacacctcttgacacccacacaaaaatctgacgtgtggtcacgtggacccgacataagcatactttctcttt 2318239  T
Q  660 c 660  Q
    |    
T  2318238 c 2318238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 4999614 - 4999510
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||| |||||||| |||  |||||||||||| |||||||||| | || | ||  |||||||||| |||  | ||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacaccttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacactttc 4999515  T
Q  655 tcttt 659  Q
    |||||    
T  4999514 tcttt 4999510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 45097835 - 45097721
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||| |||||||||||||| | || |||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacactttc 45097736  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  45097735 tctttcttcttctct 45097721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 43490119 - 43490235
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||||||||||||||||||  |||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  43490119 atgagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactt 43490218  T
Q  653 tctctttcttcttctct 669  Q
    | |||||||||||||||    
T  43490219 tatctttcttcttctct 43490235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 13365351 - 13365467
Alignment:
Q  555 gagttatgatacataaacatac--ttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||||| ||  |||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||    
T  13365351 gagttatgatacataaacacacccttagatggcaatataccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactt 13365450  T
Q  653 tctctttcttcttctct 669  Q
    |||||||||||||||||    
T  13365451 tctctttcttcttctct 13365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 2997566 - 2997473
Alignment:
Q  576 cttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  2997566 cttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctct 2997473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 38732354 - 38732468
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||||||  |||| ||| ||||| | || |||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  38732354 gagttatgatacataaacacccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttc 38732453  T
Q  655 tctttcttcttctct 669  Q
    |||||||||||||||    
T  38732454 tctttcttcttctct 38732468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 553 - 659
Target Start/End: Complemental strand, 40614004 - 40613898
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||| |||||||||||| ||||||| ||||||||||| |||| | ||||    
T  40614004 atgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacactt 40613905  T
Q  653 tctcttt 659  Q
    |||||||    
T  40613904 tctcttt 40613898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 42257193 - 42257297
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| ||||  ||||||||||||| | |  ||||||||||||||||||||||||| ||||||| ||||||||||| |||| | ||||||    
T  42257193 gagttatgatacatagacatctttaggtggcaatacatcatttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacactttc 42257292  T
Q  655 tcttt 659  Q
    |||||    
T  42257293 tcttt 42257297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 609 - 669
Target Start/End: Complemental strand, 3035029 - 3034969
Alignment:
Q  609 aaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  3035029 aaaaatctgacatgtggtcatatggaccccgcacaagtatactttctctttcttcttctct 3034969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 546 - 659
Target Start/End: Complemental strand, 38273251 - 38273138
Alignment:
Q  546 aaattatatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaag 645  Q
    |||||| | ||||||||||||||| |||| ||||| |||||||| |||| || ||||||||| |||||||||||| || |||| ||||||||||| | ||    
T  38273251 aaattaaaagagttatgatacatagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacacgtagccacatggaccccgcactag 38273152  T
Q  646 tatactttctcttt 659  Q
     | |||||||||||    
T  38273151 cacactttctcttt 38273138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 9058480 - 9058584
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||| |||||||||| |||| | ||||||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 9058579  T
Q  655 tcttt 659  Q
    |||||    
T  9058580 tcttt 9058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 5574588 - 5574484
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| ||||||||||||||||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 5574489  T
Q  655 tcttt 659  Q
    |||||    
T  5574488 tcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 36168836 - 36168940
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| ||||| || ||||| | || || || |||||| |||||| ||||| ||||||| ||||||||||| |||| ||||||||    
T  36168836 gagttatgatacatagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacacgtggccacatggaccccgcacaagcatactttc 36168935  T
Q  655 tcttt 659  Q
    |||||    
T  36168936 tcttt 36168940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 659
Target Start/End: Original strand, 28863460 - 28863559
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||||| |||| | |||||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 28863559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 629
Target Start/End: Complemental strand, 15428840 - 15428766
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccat 629  Q
    |||||||||||||||||||| |||| ||||| ||| |||| || |||| |||| |||||||||||||||||||||    
T  15428840 gagttatgatacataaacatccttatgtggccatacaccccttaacactcacacaaaaatctgacatgtggccat 15428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 669
Target Start/End: Complemental strand, 26891604 - 26891490
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||||||||||||||  ||  |||||||||||||| |||| | |||||||||| ||||||||||||||||| ||  |||||| ||  |||| | | ||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacacccctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacattttc 26891505  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||||||||    
T  26891504 tctttcctcttctct 26891490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 660
Target Start/End: Complemental strand, 33436200 - 33436095
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||||||||| |||||||| ||| || | ||  |||||||||| |||| | ||||||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 33436101  T
Q  655 tctttc 660  Q
    ||||||    
T  33436100 tctttc 33436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 660
Target Start/End: Original strand, 33436211 - 33436316
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| ||||| |||||||| |||  ||||||||||||||||||||||||| ||| |||| |||||   || |||| | ||||||    
T  33436211 gagtaatgatacatagacatccttagatggcaatacaccttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacactttc 33436310  T
Q  655 tctttc 660  Q
    ||||||    
T  33436311 tctttc 33436316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 554 - 625
Target Start/End: Complemental strand, 17820105 - 17820034
Alignment:
Q  554 tgagttatgatacataaacatact-taggtggcaatatacccattgacacccacataaaaatctgacatgtgg 625  Q
    |||||||||||||||| ||| ||| |||||||||||| |||| |||||||||||| |||||||||||||||||    
T  17820105 tgagttatgatacatagaca-actataggtggcaatacaccccttgacacccacacaaaaatctgacatgtgg 17820034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 30915463 - 30915567
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||||||||| |||| ||||| ||||||||||||||||||| || | ||  |||||||||  |||| | ||||||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 30915562  T
Q  655 tcttt 659  Q
    |||||    
T  30915563 tcttt 30915567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 659
Target Start/End: Complemental strand, 19930915 - 19930816
Alignment:
Q  560 atgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctcttt 659  Q
    |||||||||| |||  |||||||||||||| |||| |||||| ||||| |||||||||||| || | ||| |||||||||| |||  | |||||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctcttt 19930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 659
Target Start/End: Complemental strand, 28381758 - 28381651
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||| |||||||||| |||  |||||||||||||| |||  | |||||||||| |||||||||||| || | || |||||| |||| |||| | |||    
T  28381758 tatgagtaatgatacatagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacact 28381659  T
Q  652 ttctcttt 659  Q
    ||||||||    
T  28381658 ttctcttt 28381651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 13438341 - 13438447
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||||||| ||||| | || |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||    
T  13438341 atgagtaatgatacatagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 13438440  T
Q  653 tctcttt 659  Q
    |||||||    
T  13438441 tctcttt 13438447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 2533124 - 2533227
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    ||||||||||||||| |||| |||| ||||||||| | || |||||| ||||| |||||||||||| || |||| || |||||||| |||| | |||||     
T  2533124 gagttatgatacatagacatccttaagtggcaatacatcctttgaca-ccacacaaaaatctgacacgtagccacatagaccccgcacaagcacactttt 2533222  T
Q  655 tcttt 659  Q
    |||||    
T  2533223 tcttt 2533227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 7465835 - 7465731
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||| |||||||| |||| |||||||||||| |||||||||||| || | ||  |||||||| | |||| | ||||||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 7465736  T
Q  655 tcttt 659  Q
    |||||    
T  7465735 tcttt 7465731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Complemental strand, 10249482 - 10249378
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||| ||||| |||  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 10249383  T
Q  655 tcttt 659  Q
    |||||    
T  10249382 tcttt 10249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 659
Target Start/End: Original strand, 17473020 - 17473124
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  ||||| |||||||| |||| |||||||||||| |||||||||||| || | ||  |||| ||||| |||| | ||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 17473119  T
Q  655 tcttt 659  Q
    |||||    
T  17473120 tcttt 17473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 669
Target Start/End: Original strand, 20700815 - 20700929
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||| |||| ||||||||| |||| ||||| || ||| |||||||||||| || | ||  ||||||||||  ||| | ||||||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttc 20700914  T
Q  655 tctttcttcttctct 669  Q
    |||||| ||| ||||    
T  20700915 tctttcctctcctct 20700929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 620
Target Start/End: Original strand, 40701477 - 40701543
Alignment:
Q  554 tgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||| |||||||||| |||  |||||||||||||| |||  |||||||||||| ||||||||||||    
T  40701477 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgaca 40701543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 661
Target Start/End: Original strand, 27864702 - 27864810
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| |||  |||| ||||||||| |||| |||||| ||||| |||||||||||| ||   ||  ||||||||||  ||| | ||||    
T  27864702 atgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcacactt 27864801  T
Q  653 tctctttct 661  Q
    |||||||||    
T  27864802 tctctttct 27864810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 655
Target Start/End: Complemental strand, 32505748 - 32505648
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttc 654  Q
    |||| |||||||||| |||  |||||||| ||||| |||  |||||||||||| |||||||||||| || | ||  |||||||||| |||| | ||||||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 32505649  T
Q  655 t 655  Q
    |    
T  32505648 t 32505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 645
Target Start/End: Original strand, 3737986 - 3738033
Alignment:
Q  598 gacacccacataaaaatctgacatgtggccatatggaccccgcgcaag 645  Q
    |||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaag 3738033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 38882913 - 38882849
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    |||| |||||||||| |||  |||||||||||||| |||| |||||| ||||| ||||||||||||    
T  38882913 gagtaatgatacatagacacccttaggtggcaata-accctttgacatccacacaaaaatctgaca 38882849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 580 - 669
Target Start/End: Original strand, 152523 - 152612
Alignment:
Q  580 ggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactttctctttcttcttctct 669  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||| ||| || |||||||||||||||||||||    
T  152523 ggtggcaatacaccccttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctctttcttcttctct 152612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 671
Target Start/End: Original strand, 17055 - 17170
Alignment:
Q  552 tatgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatact 651  Q
    ||||||||||||| |||| |||||    ||| |||||| | || | |||| ||||| ||||||||||||||||| || ||||||||||| |||| | | |    
T  17055 tatgagttatgattcatagacata----ggttgcaatacatccctcgacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacatt 17150  T
Q  652 ttctctttcttcttctctct 671  Q
    ||||||||| ||||||||||    
T  17151 ttctctttcctcttctctct 17170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 10209 - 10144
Alignment:
Q  555 gagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgaca 620  Q
    ||||||||||||||| |||   ||||||||||||| | || |||||| ||||||||||||||||||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcctttgacatccacataaaaatctgaca 10144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 669
Target Start/End: Complemental strand, 1031 - 915
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| ||||  ||||||||||||| |||| || ||| ||||| ||||| |||||| || | ||  || | ||||| |||| | ||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactt 932  T
Q  653 tctctttcttcttctct 669  Q
    |||||||| ||| ||||    
T  931 tctctttcctctcctct 915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 669
Target Start/End: Complemental strand, 1031 - 915
Alignment:
Q  553 atgagttatgatacataaacatacttaggtggcaatatacccattgacacccacataaaaatctgacatgtggccatatggaccccgcgcaagtatactt 652  Q
    |||||| |||||||||| ||||  ||||||||||||| |||| || ||| ||||| ||||| |||||| || | ||  || | ||||| |||| | ||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactt 932  T
Q  653 tctctttcttcttctct 669  Q
    |||||||| ||| ||||    
T  931 tctctttcctctcctct 915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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