View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_22 (Length: 392)
Name: NF14649_low_22
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 22474404 - 22474791
Alignment:
| Q |
1 |
ggtgcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccat |
100 |
Q |
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| T |
22474404 |
ggtgcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccat |
22474503 |
T |
|
| Q |
101 |
ctgcaaggaatacctatgtgtgtccagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccat-ttccacaaagagaggtca |
199 |
Q |
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| T |
22474504 |
ctgcaaggaatacctatgtgtgttgagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccttctgccacaaagaatggtaa |
22474603 |
T |
|
| Q |
200 |
taggaacataattaaggcagctgccaaaattacacatattccagtgactcaagcattctcaaattcaaggaacagacctaacaagtttcctaaagtagaa |
299 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||| | |||||| |||||| ||||||||||| |
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| T |
22474604 |
taggaacataattaaggcagctactaaaattacacatattccagttactcaagcattctcaaattaaaggaagaaacctaaaaagttttctaaagtagaa |
22474703 |
T |
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| Q |
300 |
aaacaaaagaatttaactcacatgaatgagtcggctatagctacaaatttgcaaggtaacacaagaaaagttaaactcggtacctttg |
387 |
Q |
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| T |
22474704 |
aaacaagagaatttaactcacatgaatgagtcagctatagctacaaatttgcagggtaacacaagagaagttgaacttggtacctttg |
22474791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 387
Target Start/End: Complemental strand, 22474400 - 22474043
Alignment:
| Q |
30 |
accacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccatctgcaaggaatacctatgtgtgtccagtt |
129 |
Q |
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| T |
22474400 |
accacgaacatcactgatgttctcaccaactcatcaacggcctacttggagtgatgatttccctaaaccaactgcaaggaatatcaatgtgtgtccagtt |
22474301 |
T |
|
| Q |
130 |
aaagtttctcaaccgacacatattccaattactcatgttccaaatccaccatttccacaaagagaggtcataggaacataattaaggcagctgccaaaat |
229 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22474300 |
aaagtttcccaaccaacacatattctaattactcatgttccgaatccaccctttccacaaagagaggtcataggaacataattaaggcagctgccaaaat |
22474201 |
T |
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| Q |
230 |
tacacatattccagtgactcaagcattctcaaattcaaggaacagacctaacaagtttcctaaagtagaaaaacaaaagaatttaactcacatgaatgag |
329 |
Q |
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| T |
22474200 |
tacacatattccagttactcaagcattctcaaattcaaggaagagacctaacatgtttcctaaagtagaaaaacaagagaatttaactcacatgaatgag |
22474101 |
T |
|
| Q |
330 |
tcggctatagctacaaatttgcaaggtaacacaagaaaagttaaactcggtacctttg |
387 |
Q |
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| T |
22474100 |
tcggctatagctacaaatttgcaaggtaacacaagagaagttaaactcggtacctttg |
22474043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 19213183 - 19212883
Alignment:
| Q |
4 |
gcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccatctg |
103 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||| || |
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| T |
19213183 |
gcatctggaataccattttcatcaccaccacgaacatcacggatgttctcaccagctcaccaagggcctacttggagccatgatttccccaa-------- |
19213092 |
T |
|
| Q |
104 |
caaggaatacctatgtgtgtccagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccattt-ccacaaagagaggtcatag |
202 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||| ||| |
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| T |
19213091 |
-------taccaatgtgtgtccggttcaagtttctcaaccgacacatattccaactactcatgttccaaatccaccttctgccacaaa---------tag |
19213008 |
T |
|
| Q |
203 |
gaacataattaaggcagctgccaaaattacacatattccagtgactcaagcattctcaaattcaaggaacagacctaacaagtttcctaaagtagaaaaa |
302 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
19213007 |
gaacataactaaggcagctgccaaagttactcatattccagttactcgtgcattctcaaattcaaggacgagacctaacaagtttcctgaagttgaaaaa |
19212908 |
T |
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| Q |
303 |
caaaagaatttaactcacatgaatg |
327 |
Q |
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||| ||||||||||||| ||||||| |
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| T |
19212907 |
caagagaatttaactcagatgaatg |
19212883 |
T |
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