View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_24 (Length: 383)

Name: NF14649_low_24
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_24
NF14649_low_24
[»] chr1 (25 HSPs)
chr1 (86-204)||(16437036-16437153)
chr1 (298-347)||(12993530-12993579)
chr1 (298-351)||(51469136-51469189)
chr1 (284-347)||(40328957-40329020)
chr1 (288-347)||(4683022-4683081)
chr1 (288-347)||(21909926-21909985)
chr1 (304-347)||(32914259-32914302)
chr1 (288-347)||(52253623-52253682)
chr1 (307-353)||(34598941-34598987)
chr1 (303-341)||(35050807-35050845)
chr1 (285-351)||(48376886-48376951)
chr1 (304-353)||(2091758-2091807)
chr1 (286-347)||(16426993-16427054)
chr1 (303-344)||(42835600-42835641)
chr1 (288-344)||(15013653-15013709)
chr1 (307-351)||(15055036-15055080)
chr1 (286-350)||(24023359-24023423)
chr1 (303-351)||(24478676-24478724)
chr1 (287-347)||(34061938-34061998)
chr1 (287-347)||(45011572-45011632)
chr1 (303-347)||(46812986-46813030)
chr1 (303-351)||(47011255-47011303)
chr1 (303-351)||(47418156-47418204)
chr1 (303-347)||(51138869-51138913)
chr1 (303-347)||(52880000-52880044)
[»] chr5 (21 HSPs)
chr5 (303-351)||(36329091-36329139)
chr5 (302-347)||(5089538-5089583)
chr5 (304-353)||(8409631-8409680)
chr5 (304-353)||(8409742-8409791)
chr5 (294-347)||(20207236-20207289)
chr5 (285-353)||(13420513-13420581)
chr5 (303-351)||(15577478-15577526)
chr5 (142-224)||(17049577-17049660)
chr5 (304-347)||(33696648-33696691)
chr5 (287-344)||(6205156-6205213)
chr5 (286-347)||(14064804-14064865)
chr5 (302-347)||(15966728-15966773)
chr5 (288-353)||(23118145-23118210)
chr5 (286-347)||(43585489-43585550)
chr5 (303-351)||(7581466-7581514)
chr5 (307-347)||(9985006-9985046)
chr5 (303-347)||(14571019-14571063)
chr5 (303-347)||(20367319-20367363)
chr5 (287-347)||(21163615-21163675)
chr5 (287-347)||(24433620-24433680)
chr5 (303-351)||(40208558-40208606)
[»] chr8 (21 HSPs)
chr8 (303-350)||(35972382-35972429)
chr8 (284-347)||(41178043-41178106)
chr8 (302-347)||(29110348-29110393)
chr8 (304-347)||(13271705-13271748)
chr8 (302-353)||(29110274-29110325)
chr8 (288-347)||(34188403-34188462)
chr8 (302-351)||(13832089-13832138)
chr8 (298-347)||(41177964-41178013)
chr8 (302-351)||(44838855-44838904)
chr8 (287-347)||(5040063-5040123)
chr8 (302-353)||(9427244-9427296)
chr8 (303-351)||(29450860-29450908)
chr8 (304-347)||(34188330-34188373)
chr8 (288-347)||(42835674-42835733)
chr8 (288-347)||(43483928-43483987)
chr8 (302-348)||(29789837-29789883)
chr8 (294-347)||(3611854-3611907)
chr8 (294-347)||(15715355-15715408)
chr8 (302-347)||(44838784-44838829)
chr8 (291-351)||(20524247-20524307)
chr8 (303-347)||(26492320-26492364)
[»] chr2 (20 HSPs)
chr2 (288-347)||(40739577-40739636)
chr2 (288-347)||(32070457-32070516)
chr2 (285-347)||(6006675-6006737)
chr2 (302-347)||(18967234-18967279)
chr2 (302-347)||(27743701-27743746)
chr2 (287-347)||(3167250-3167310)
chr2 (287-347)||(8079429-8079489)
chr2 (288-343)||(8218251-8218306)
chr2 (302-351)||(6096351-6096401)
chr2 (304-353)||(8382877-8382926)
chr2 (302-347)||(32473481-32473526)
chr2 (298-347)||(38261998-38262047)
chr2 (302-347)||(42579104-42579149)
chr2 (303-351)||(10099633-10099681)
chr2 (288-344)||(20128740-20128796)
chr2 (307-347)||(22444921-22444961)
chr2 (287-347)||(31211798-31211857)
chr2 (298-346)||(34240917-34240965)
chr2 (295-347)||(37354883-37354935)
chr2 (146-190)||(39534197-39534241)
[»] chr7 (11 HSPs)
chr7 (302-347)||(507683-507728)
chr7 (288-353)||(3177316-3177380)
chr7 (286-347)||(27042185-27042246)
chr7 (304-347)||(35593653-35593696)
chr7 (287-347)||(3498379-3498439)
chr7 (287-347)||(11032298-11032358)
chr7 (288-351)||(36711620-36711683)
chr7 (288-353)||(24936677-24936742)
chr7 (324-353)||(28321642-28321671)
chr7 (307-351)||(27234939-27234983)
chr7 (303-351)||(31758494-31758542)
[»] chr6 (8 HSPs)
chr6 (302-347)||(13397426-13397471)
chr6 (302-347)||(17854846-17854891)
chr6 (288-351)||(7246952-7247015)
chr6 (303-345)||(32161575-32161617)
chr6 (302-347)||(8029442-8029487)
chr6 (324-353)||(31759949-31759978)
chr6 (291-347)||(3212240-3212296)
chr6 (287-347)||(9908221-9908281)
[»] chr4 (24 HSPs)
chr4 (302-351)||(26206604-26206653)
chr4 (302-351)||(39294183-39294232)
chr4 (287-351)||(37381132-37381196)
chr4 (287-353)||(25250847-25250913)
chr4 (302-351)||(5048445-5048494)
chr4 (302-347)||(33659857-33659902)
chr4 (298-347)||(41789006-41789055)
chr4 (303-347)||(5289713-5289757)
chr4 (295-351)||(16391942-16391998)
chr4 (287-347)||(44639831-44639891)
chr4 (304-351)||(19754227-19754274)
chr4 (304-351)||(19785532-19785579)
chr4 (302-353)||(34100109-34100160)
chr4 (286-353)||(34595761-34595828)
chr4 (294-353)||(37306931-37306990)
chr4 (297-347)||(16391437-16391487)
chr4 (302-344)||(42184727-42184769)
chr4 (302-347)||(9803000-9803045)
chr4 (287-351)||(23795573-23795637)
chr4 (307-351)||(30162692-30162736)
chr4 (303-351)||(36712062-36712110)
chr4 (287-347)||(39754094-39754154)
chr4 (303-351)||(44495752-44495800)
chr4 (287-347)||(46779379-46779439)
[»] chr3 (13 HSPs)
chr3 (288-347)||(16894255-16894314)
chr3 (295-344)||(33640874-33640923)
chr3 (287-351)||(1676265-1676329)
chr3 (304-356)||(7933530-7933582)
chr3 (288-347)||(24599964-24600023)
chr3 (309-351)||(23005032-23005074)
chr3 (303-353)||(24312575-24312625)
chr3 (303-353)||(32956497-32956547)
chr3 (302-347)||(24350816-24350861)
chr3 (302-351)||(29076535-29076584)
chr3 (302-347)||(32146474-32146519)
chr3 (286-347)||(34935532-34935593)
chr3 (302-347)||(40326448-40326493)
[»] scaffold0430 (1 HSPs)
scaffold0430 (142-187)||(587-632)
[»] scaffold0224 (1 HSPs)
scaffold0224 (303-344)||(22681-22722)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 16437036 - 16437153
Alignment:
Q  86 acacgagagatgcagtgagaaaccgaaggaagaaaacgtaaatttggaacagtagaccgctggacaaatagttgtccccaactaatgcagtggacaaaaa 185  Q
    ||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| || |||||||    
T  16437036 acacgagagatacagcgagaaaccgaaggatgaaaacgtaaatttagaacagtagaccgttggacaaaaagttgtccccaactaatgca-tgaacaaaaa 16437134  T
Q  186 agcggatagttgttctgtc 204  Q
    ||||||||||||| |||||    
T  16437135 agcggatagttgtcctgtc 16437153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 12993530 - 12993579
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||    
T  12993530 gttctaaaatataaataaatttgattttttaggttcattcaattaatgat 12993579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 51469189 - 51469136
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||| ||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  51469189 gttcctaattataaataaatttgattttttaggttgattcaattaatgatatat 51469136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 40329020 - 40328957
Alignment:
Q  284 attatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||| ||| ||| ||||||||||| |||||| | |||||||||| ||||||||||||||    
T  40329020 attatactccctccgtttttaaatataaacaaattttactttttagattcattcaattaatgat 40328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 4683081 - 4683022
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||||||| ||||||||||||||| |||| ||||| | || ||||||||||||||    
T  4683081 tactccctctgtttttaaatataaataaaattgacttttttggttcattcaattaatgat 4683022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 21909985 - 21909926
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||| ||||||||||  |||||| | |||||||||||||||||||||||||    
T  21909985 tactccctccgtttttaaatataagcaaattttactttttagatttattcaattaatgat 21909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 32914302 - 32914259
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||    
T  32914302 aaatataagtaaattttattttttagattcattcaattaatgat 32914259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 52253682 - 52253623
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||| |||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  52253682 tactccctccgtttttaaatataagtaaattttattttttaaattcattcaattaatgat 52253623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 34598987 - 34598941
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  34598987 tataagtaaatttgactttttagattcattcaattaatgatgtatat 34598941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 35050807 - 35050845
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaatt 341  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  35050807 taaatataaataaatttgattttttaggttcattcaatt 35050845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 48376951 - 48376886
Alignment:
Q  285 ttatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||||  |||| ||||||||  |||||||| |||||||||| ||||||||||| ||||||    
T  48376951 ttatactctctcgtttct-aaatataagcaaatttgactttttagattcattcaattaataatatat 48376886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 2091758 - 2091807
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||| ||||||||| ||||||| || |||||||||||||| |||||    
T  2091758 aaatataagtaaatttgactttttaggttcattcaattaatgatgtatat 2091807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 16427054 - 16426993
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| ||| ||| ||||||||||  ||| ||||||||||||||| ||||| ||||||||    
T  16427054 tatactccctccgtttttaaatataagcaaaattgattttttagattcattcatttaatgat 16426993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 42835600 - 42835641
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaat 344  Q
    ||||||||||||||||| |||||||||||| ||| |||||||    
T  42835600 taaatataaataaattttattttttagattcatttaattaat 42835641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 15013653 - 15013709
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaat 344  Q
    ||||||||| ||| | || ||||| ||||||||| |||||||||| |||||||||||    
T  15013653 tactctctccgttttcaattataagtaaatttgactttttagattcattcaattaat 15013709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 15055080 - 15055036
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||  |||||||||| ||||||||||||||||||    
T  15055080 tataaataaaattgtctttttagattcattcaattaatgatatat 15055036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 24023359 - 24023423
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatata 350  Q
    ||||||| ||| |||  |||||||||  ||| || ||||||||| ||||||||||||||||||||    
T  24023359 tatactccctccgtttctaaatataagcaaaatttattttttaggtttattcaattaatgatata 24023423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 24478676 - 24478724
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||| ||||||| |||||| || || ||||||||||||||||||    
T  24478676 taaatataagtaaattttatttttgaggttcattcaattaatgatatat 24478724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 34061938 - 34061998
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||| ||||||||||| |||||| | ||||||| || ||||||||||||||    
T  34061938 atactccctccgtttttaaatataaacaaattttactttttaggttcattcaattaatgat 34061998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 45011632 - 45011572
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||||||| ||||||||||||||| |||||| ||||  || ||||| ||||||||    
T  45011632 atactccctctgtttttaaatataaataaaattgattatttaagttcattcatttaatgat 45011572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 46813030 - 46812986
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| |||||| |||||||| ||| ||||||||||||||    
T  46813030 taaatataaacaaattttattttttaaattcattcaattaatgat 46812986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 47011255 - 47011303
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||||| | ||||||| || ||||||||||||||||||    
T  47011255 taaatataaacaaattttactttttaggttcattcaattaatgatatat 47011303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 47418156 - 47418204
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||| |||| ||||||||||||||| ||| ||||||| ||||||    
T  47418156 taaatataagtaaaattgattttttagattcatttaattaataatatat 47418204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 51138869 - 51138913
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||| |||| || ||||||||| |||||||||||||||||    
T  51138869 taaatataagtaaaattaattttttagttttattcaattaatgat 51138913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 52880044 - 52880000
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||| ||||||||| ||||||| || ||||||||||||||    
T  52880044 taaatataagtaaatttgactttttaggttcattcaattaatgat 52880000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 36329091 - 36329139
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  36329091 taaatataaataaatttgattttttaggttcattcaattaatgatatat 36329139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 5089583 - 5089538
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  5089583 ttaaatataaataaaattgattttttagatttattcatttaatgat 5089538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 8409631 - 8409680
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||| ||||||| | |||||||||| ||||||||||||||||||||    
T  8409631 aaatataagtaaattttactttttagattcattcaattaatgatatatat 8409680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 8409791 - 8409742
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||||||||||| | |||||||||| |||||||||||||| |||||    
T  8409791 aaatataaataaattttactttttagattcattcaattaatgatgtatat 8409742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 20207289 - 20207236
Alignment:
Q  294 ctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| |||||||||| |||| || |||||||||||| ||||||||||||||    
T  20207289 ctctgtttttaaatataagtaaaatttattttttagattcattcaattaatgat 20207236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 13420581 - 13420513
Alignment:
Q  285 ttatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||| ||| ||| ||||||||||  |||||||||||||||| || ||| |||||||||| |||||    
T  13420581 ttatactccctccgtttttaaatataagcaaatttgattttttaggttcatttaattaatgatgtatat 13420513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 15577478 - 15577526
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||||||    
T  15577478 taaatataaacaaattttattttctagatttatttaattaatgatatat 15577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 17049660 - 17049577
Alignment:
Q  142 ccgctggacaaatagttgtccccaactaatgcagtggacaaaaaagcggatagttgttctgt-catgattatttcttttgtgct 224  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||| || || ||||  ||| | ||||||||| |||||||||    
T  17049660 ccgctggacaaaaagttgtccccaactaaagtggtggacaaaaaagtggttacttgtcttgtccttgattatttattttgtgct 17049577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 33696648 - 33696691
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||||| | ||||||| |||||||||||||||||    
T  33696648 aaatataaataaattttactttttaggtttattcaattaatgat 33696691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 6205213 - 6205156
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaat 344  Q
    ||||||||||  || |||||||||||||||| ||||||||||| || ||||| |||||    
T  6205213 atactctctccatttttaaatataaataaatatgattttttaggttcattcatttaat 6205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 14064804 - 14064865
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| ||| ||| |||||||||| ||||||| | ||||||| || ||||||||||||||    
T  14064804 tatactccctccgtttttaaatataagtaaattttactttttaggttcattcaattaatgat 14064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 15966773 - 15966728
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||| |||| ||||||| || ||||||||||||||    
T  15966773 ttaaatataaataaaattgactttttaggttcattcaattaatgat 15966728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 23118145 - 23118210
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||| |||||||  ||| |||||| |||||| ||||||||| || |||||||||||||| |||||    
T  23118145 tactccctctgttactaattataaacaaattttattttttaggttcattcaattaatgatttatat 23118210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 43585489 - 43585550
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| ||| ||| ||||||||||| |||||| | ||||||| || ||||||||||||||    
T  43585489 tatactccctccgtttttaaatataaacaaattttactttttaggttcattcaattaatgat 43585550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 7581514 - 7581466
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||  |||||| | ||||||| |||||||||||||||||||||    
T  7581514 taaatataagcaaattttaatttttaggtttattcaattaatgatatat 7581466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 9985046 - 9985006
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| |||||||||||||||||||| |||||| |||||||    
T  9985046 tataagtaaatttgattttttagattcattcaactaatgat 9985006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 14571019 - 14571063
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||    
T  14571019 taaatataagcaaattttattttttagattcattcaattaatgat 14571063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 20367319 - 20367363
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| |||||| | |||||||||| ||||||||||||||    
T  20367319 taaatataaacaaattttactttttagattcattcaattaatgat 20367363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 21163675 - 21163615
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||||||| | |||||||| ||||||| | ||||||| || ||||||||||||||    
T  21163675 atactccctctgttttaaaatataagtaaattttactttttaggttcattcaattaatgat 21163615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 24433680 - 24433620
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||| | |||||||| ||||||| ||||||||| || ||||||||||||||    
T  24433680 atactcactccgttttaaaatataagtaaattttattttttaggttcattcaattaatgat 24433620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 40208606 - 40208558
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||| ||||||| | ||||||  |||||||||||||||||||||    
T  40208606 taaatataagtaaattttactttttaagtttattcaattaatgatatat 40208558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 35972382 - 35972429
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatata 350  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  35972382 taaatataaataaatttgactttttagattcattcaattaatgatata 35972429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 41178106 - 41178043
Alignment:
Q  284 attatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||| |||  |||||||||| |||||||| |||||||||| ||||||||||||||    
T  41178106 attatactctctccgtttctaaatataaacaaatttgactttttagattcattcaattaatgat 41178043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 29110393 - 29110348
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  29110393 ttaaatataaataaattttactttttagatttattcaattaatgat 29110348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 13271705 - 13271748
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  13271705 aaatataaataaattttattttttaggtttattcaattaatgat 13271748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 29110274 - 29110325
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||| |||||    
T  29110274 ttaaatataaataaattttactttttaggtttattcaattaatgatttatat 29110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 34188462 - 34188403
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| |||||||||||||||||||||| | ||||||| || ||||||||||||||    
T  34188462 tactccctccgttcttaaatataaataaattttactttttaggttcattcaattaatgat 34188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 13832138 - 13832089
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||||||||||||| || ||| ||| ||||||||||||||||||    
T  13832138 ttaaatataaataaatttgacttcttaaattcattcaattaatgatatat 13832089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 41177964 - 41178013
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  41177964 gttcttaaatataagtaaatttgactttttaggttcattcaattaatgat 41178013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 44838904 - 44838855
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||| |||||||||| |||| ||||||||||||||||||    
T  44838904 ttaaatataagtaaaattgattttttggattcattcaattaatgatatat 44838855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 5040063 - 5040123
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||| ||||| |||| ||||| |||||||||  ||||||||| ||||||||||||||    
T  5040063 atactctccctgttattaattataagtaaatttgacattttagattcattcaattaatgat 5040123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 9427296 - 9427244
Alignment:
Q  302 ttaaatataaataaattt-gattttttagatttattcaattaatgatatatat 353  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  9427296 ttaattataaataaattttgattttttagattaattcaattaataatatatat 9427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 29450908 - 29450860
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  29450908 taaatataaataaatttgactttttaaattcattcaattaataatatat 29450860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 34188330 - 34188373
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  34188330 aaatataaataaatttgactttttaggttcattcaattaatgat 34188373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 42835674 - 42835733
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||||||||||||||||||| |||||| | ||||||| || ||| ||||||||||    
T  42835674 tactccctctgttcttaaatataaagaaattttactttttaggttcatttaattaatgat 42835733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 43483928 - 43483987
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||||||||||||||  |||||| | |||||||||| ||||||||||||||    
T  43483928 tactccctccgttcttaaatataagcaaatttcactttttagattcattcaattaatgat 43483987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 29789883 - 29789837
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgata 348  Q
    ||||||||||||||| |||||||||||| || ||||| |||||||||    
T  29789883 ttaaatataaataaaattgattttttaggttcattcatttaatgata 29789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 3611907 - 3611854
Alignment:
Q  294 ctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| |||||||||| |||| |||||||||| | || ||||||||||||||    
T  3611907 ctctgtttttaaatataagtaaaattgatttttttggttcattcaattaatgat 3611854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 15715355 - 15715408
Alignment:
Q  294 ctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| ||||||||||||||| || | |||||||||| ||||| ||||||||    
T  15715355 ctctgtttttaaatataaataaaatttactttttagattcattcatttaatgat 15715408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 44838784 - 44838829
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||  ||| |||| |||||||||||||||||||||||||    
T  44838784 ttaaatataagcaaaattgactttttagatttattcaattaatgat 44838829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 20524307 - 20524247
Alignment:
Q  291 tctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||| ||| |||| ||||| ||||||| ||||||||   ||||||||||||||||||||    
T  20524307 tctctccgttattaattataagtaaatttaattttttaatcttattcaattaatgatatat 20524247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 26492320 - 26492364
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| ||| |||||||||||| || ||||||||||||||    
T  26492320 taaatataaacaaaattgattttttaggttcattcaattaatgat 26492364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 40739636 - 40739577
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||    
T  40739636 tactctctccgttctaaaatataagtaaatttgattttttaggttcattcaattaatgat 40739577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 32070457 - 32070516
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||    
T  32070457 tactccctccgttctaaaatataagtaaatttgattttttaggttcattcaattaatgat 32070516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 6006675 - 6006737
Alignment:
Q  285 ttatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||||| ||| | ||||||||    
T  6006675 ttatactctctccgtttttaaatataaataaaattgactttttagattcattgatttaatgat 6006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 18967234 - 18967279
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  18967234 ttaaatataagtaaaattgattttttagatttattcatttaatgat 18967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 27743746 - 27743701
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||    
T  27743746 ttaaatataaataaattttactttttagattcattcaattaatgat 27743701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 3167250 - 3167310
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||||||||||||||  ||| ||||||||||||||| ||||| ||||||||    
T  3167250 atactccctcagttcttaaatataagcaaaattgattttttagattcattcatttaatgat 3167310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 8079489 - 8079429
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||| ||||||||||||||| |||||||||||| |||||| | ||||||||    
T  8079489 atactccctccgtttttaaatataaataaaattgattttttaggtttatttatttaatgat 8079429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 8218306 - 8218251
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaa 343  Q
    |||||||||||||  |||||||||| |||||| ||||||||| |||||| ||||||    
T  8218306 tactctctctgtttataaatataaacaaattttattttttaggtttatttaattaa 8218251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 6096401 - 6096351
Alignment:
Q  302 ttaaatataaataaatttgatttttt-agatttattcaattaatgatatat 351  Q
    ||||||||||  ||| |||||||||| ||||||||||||||||||||||||    
T  6096401 ttaaatataagcaaaattgatttttttagatttattcaattaatgatatat 6096351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 8382926 - 8382877
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||| ||||||| ||||||||| || ||||||||||| ||||||||    
T  8382926 aaatataagtaaattttattttttaggttcattcaattaataatatatat 8382877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 32473481 - 32473526
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||  |||||| |||||||||||| ||||||||||||||    
T  32473481 ttaaatataagcaaattttattttttagattcattcaattaatgat 32473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 38261998 - 38262047
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| |||||||| ||||||||| ||||||| || ||||||||||||||    
T  38261998 gttctaaaatataagtaaatttgactttttaggttcattcaattaatgat 38262047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 42579149 - 42579104
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| ||||||| | |||||||||| ||||||||||||||    
T  42579149 ttaaatataagtaaattttactttttagattcattcaattaatgat 42579104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 10099681 - 10099633
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||||||||| |  |||||| || ||||||||||||||||||    
T  10099681 taaatataaataaattttaccttttaggttcattcaattaatgatatat 10099633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 20128740 - 20128796
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaat 344  Q
    ||||| |||||||  |||||||||  |||||| | ||||||||||||||||||||||    
T  20128740 tactccctctgttactaaatataatcaaattttactttttagatttattcaattaat 20128796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 22444961 - 22444921
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||||||||||| || |||||||| |||||    
T  22444961 tataaataaatttgattttttaggttcattcaattgatgat 22444921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 31211857 - 31211798
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||||||||||||||| |||||| | |||||||||| |||| |||||||||    
T  31211857 atactccctccgttcttaaatataaacaaatttta-tttttagattcattccattaatgat 31211798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 34240965 - 34240917
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatga 346  Q
    |||| ||||||||| ||||||| ||||||||| || |||||||||||||    
T  34240965 gttcctaaatataagtaaattttattttttaggttcattcaattaatga 34240917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 37354883 - 37354935
Alignment:
Q  295 tctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||||||||||| ||| |||| |||||||||| ||||| ||||||||    
T  37354883 tctgtttttaaatataaacaaaattgactttttagattcattcacttaatgat 37354935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 39534241 - 39534197
Alignment:
Q  146 tggacaaatagttgtccccaactaatgcagtggacaaaaaagcgg 190  Q
    |||||||| |||||||||||||||| |  ||||||||||||||||    
T  39534241 tggacaaaaagttgtccccaactaaagtggtggacaaaaaagcgg 39534197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 507728 - 507683
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||    
T  507728 ttaattataaataaatttgattttttaggtttattcaattaatgat 507683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 3177316 - 3177380
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||| |||||    
T  3177316 tactctctccgttcttaattataagtaaatttgattttttaggtttatt-aattaatgatgtatat 3177380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 27042246 - 27042185
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||| ||| ||||  |||||||||||||||||| |||||||||| ||||||||||||||    
T  27042246 tatactccctccgttccaaaatataaataaatttgactttttagattcattcaattaatgat 27042185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 35593653 - 35593696
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  35593653 aaatataagtaaattttattttttagatttattcaattaatgat 35593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 3498439 - 3498379
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||||||| | |||||||| ||||||| | ||||||| || ||||||||||||||    
T  3498439 atactctctctgttttaaaatataagtaaattttactttttaggttcattcaattaatgat 3498379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 11032298 - 11032358
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||| ||||| |||||||||  |||||||| |||||| ||| ||||||||||||||    
T  11032298 atactctctttgttcgtaaatataagcaaatttgactttttatattcattcaattaatgat 11032358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 36711683 - 36711620
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||| ||| ||| |||||||||||||||||| | |||| || || ||||||||||||||||||    
T  36711683 tactccctccgtttttaaatataaataaattttacttttaaggttcattcaattaatgatatat 36711620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 24936677 - 24936742
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||||| ||| ||||||||||  ||| ||||||||||||||| ||| | |||||||| |||||    
T  24936677 tactctctccgtttttaaatataagcaaaattgattttttagattcatttatttaatgatgtatat 24936742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 28321671 - 28321642
Alignment:
Q  324 ttttagatttattcaattaatgatatatat 353  Q
    ||||||||||||||||||||||||||||||    
T  28321671 ttttagatttattcaattaatgatatatat 28321642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 27234983 - 27234939
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||||    
T  27234983 tataagtaaatttgactttttaggttcattcaattaatgatatat 27234939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 31758494 - 31758542
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||||| |  ||||||||||||||||||||| ||||||    
T  31758494 taaatataaacaaattttacattttagatttattcaattaataatatat 31758542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 13397426 - 13397471
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||    
T  13397426 ttaattataaacaaatttgattttttagatttattcaattaatgat 13397471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 17854846 - 17854891
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||    
T  17854846 ttaaatataaacaaattttattttttagattcattcaattaatgat 17854891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 7247015 - 7246952
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||| |||| ||| ||||||||||||||| || ||||||||| || ||||||||||| ||||||    
T  7247015 tactatctccgtttttaaatataaataaaattaattttttaggttcattcaattaataatatat 7246952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 32161575 - 32161617
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatg 345  Q
    ||||||||| ||||||||||||||||| || ||||||||||||    
T  32161575 taaatataagtaaatttgattttttaggttcattcaattaatg 32161617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 8029487 - 8029442
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||    
T  8029487 ttaattataaaaaaatttgactttttagattcattcaattaatgat 8029442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Original strand, 31759949 - 31759978
Alignment:
Q  324 ttttagatttattcaattaatgatatatat 353  Q
    ||||||||||||||||||||||||||||||    
T  31759949 ttttagatttattcaattaatgatatatat 31759978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 3212240 - 3212296
Alignment:
Q  291 tctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| |||||||||| |||| |||| ||||||| || ||||||||||||||    
T  3212240 tctctccgtttttaaatataagtaaaattgaatttttaggttcattcaattaatgat 3212296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 9908281 - 9908221
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||||  |||||||| ||||||||| ||||||| || ||||||||||||||    
T  9908281 atactccctccgttccaaaatataagtaaatttgactttttaggttcattcaattaatgat 9908221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 26206604 - 26206653
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  26206604 ttaaatataagtaaattttactttttagatttattcaattaatgatatat 26206653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 39294183 - 39294232
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||||||    
T  39294183 ttaaatataaataaatttgactttttaggttcattcaattaatgatatat 39294232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 37381196 - 37381132
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||| ||| ||| |||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  37381196 atactccctccgttattaattataaataaatttgactttttagattcgttcaattaatgatatat 37381132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 25250913 - 25250847
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||| ||| ||| |||| ||||| |||| ||||||||||||||| |||||||||||||| |||||    
T  25250913 atactccctccgtttttaattataagtaaaattgattttttagattaattcaattaatgatgtatat 25250847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 5048445 - 5048494
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||| |||||| |||||||||||| ||| ||||||||||||||    
T  5048445 ttaaatataaacaaattttattttttagattcatttaattaatgatatat 5048494  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 33659902 - 33659857
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  33659902 ttaaatataagtaaattttattttttaggtttattcaattaatgat 33659857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 41789055 - 41789006
Alignment:
Q  298 gttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| |||||||| ||||||||||||||||  |||||||||||||||||    
T  41789055 gttctaaaatataagtaaatttgattttttaagtttattcaattaatgat 41789006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 5289713 - 5289757
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||    
T  5289713 taaatataaataaattttactttttagattcattcaattaatgat 5289757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 16391942 - 16391998
Alignment:
Q  295 tctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||| |||| |||||| |||||| ||||||||| || ||||||||||||||||||    
T  16391942 tctgttattaattataaacaaatttaattttttaggttcattcaattaatgatatat 16391998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 44639891 - 44639831
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||||||||||||||  |||||| | |||||||||| ||||||||||||||    
T  44639891 atactccctccgttcttaaatataagcaaatttcactttttagattcattcaattaatgat 44639831  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 19754227 - 19754274
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  19754227 aaatataagtaaattttactttttagattcattcaattaatgatatat 19754274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 19785579 - 19785532
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  19785579 aaatataagtaaattttactttttagattcattcaattaatgatatat 19785532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 34100109 - 34100160
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||||||||||| |||| |||||| ||||||| | ||||||||||||||    
T  34100109 ttaaatataaataaaattgagtttttaaatttatttatttaatgatatatat 34100160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 34595828 - 34595761
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||| ||| ||| ||||||||||| ||| |||| ||||||| || |||||||||||||| |||||    
T  34595828 tatactccctccgtttttaaatataaacaaaattgactttttaggttcattcaattaatgatgtatat 34595761  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 37306990 - 37306931
Alignment:
Q  294 ctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||| |||||||||| ||||||| | |||||| ||| |||||||||||||| |||||    
T  37306990 ctctgtttttaaatataagtaaattttactttttaaattcattcaattaatgatgtatat 37306931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 16391437 - 16391487
Alignment:
Q  297 tgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||| |||| |||||| |||||| |||||||||||| ||||||||||||||    
T  16391437 tgttattaattataaacaaatttaattttttagattcattcaattaatgat 16391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 42184769 - 42184727
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaat 344  Q
    |||| ||||||||||||| |||||||||||| |||||||||||    
T  42184769 ttaattataaataaatttaattttttagattcattcaattaat 42184727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 9803045 - 9803000
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||||    
T  9803045 ttaaatataaataaaattgattttttaagtttatttaattaatgat 9803000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 23795573 - 23795637
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||| ||||||  ||||||||||  ||| |||||||||||| || ||||| ||||||||||||    
T  23795573 atactccctctgtctttaaatataagcaaaattgattttttaggttcattcatttaatgatatat 23795637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 30162736 - 30162692
Alignment:
Q  307 tataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||||    
T  30162736 tataagtaaatttgactttttaggttcattcaattaatgatatat 30162692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 36712062 - 36712110
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    ||||||||||||||||| | ||||||  |||||| ||||||||||||||    
T  36712062 taaatataaataaattttactttttaagtttatttaattaatgatatat 36712110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 39754094 - 39754154
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| |||  |||||||||  |||||| | ||||||| |||||||||||||||||    
T  39754094 atactctctccgtttctaaatataagcaaattttactttttaggtttattcaattaatgat 39754154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 44495800 - 44495752
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||  ||| |||||||||||| || ||||||||||||||||||    
T  44495800 taaatataagcaaaattgattttttaggttcattcaattaatgatatat 44495752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 46779439 - 46779379
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||| ||| ||| ||||||||||  |||||| |||||||||||| ||| ||||||||||    
T  46779439 atactccctccgtttttaaatataagcaaattttattttttagattcatttaattaatgat 46779379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 16894314 - 16894255
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||| ||||||||||| ||| |||| |||||||||||||||||||||||||    
T  16894314 tactccctccgtttttaaatataaacaaaattgactttttagatttattcaattaatgat 16894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 33640923 - 33640874
Alignment:
Q  295 tctgttcttaaatataaataaatttgattttttagatttattcaattaat 344  Q
    |||||| | ||||||||||||| ||||||||||||||||||||| |||||    
T  33640923 tctgttttaaaatataaataaaattgattttttagatttattcatttaat 33640874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 1676265 - 1676329
Alignment:
Q  287 atactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||  ||| ||||||||||||||| |||| |||||||||| ||||| ||||| ||||||    
T  1676265 atactctcttcgtttttaaatataaataaaattgactttttagattcattcacttaataatatat 1676329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 7933530 - 7933582
Alignment:
Q  304 aaatataaataaatttgattttttagatttattcaattaatgatatatatcat 356  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||| ||| ||||    
T  7933530 aaatataagtaaattttattttttaggtttattcaattaatgatgtatgtcat 7933582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 24600023 - 24599964
Alignment:
Q  288 tactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||| ||| ||||||||||||||  |||||| | ||||||| |||||||||||||||||    
T  24600023 tactccctccgttcttaaatataagcaaattttactttttaggtttattcaattaatgat 24599964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 23005032 - 23005074
Alignment:
Q  309 taaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||| |||||| ||||||||| |||||||||||||||||||||    
T  23005032 taaacaaatttaattttttaggtttattcaattaatgatatat 23005074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 24312575 - 24312625
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    |||||||||| ||| || | |||||||||||||||| ||||||||||||||    
T  24312575 taaatataaacaaaatttactttttagatttattcatttaatgatatatat 24312625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 32956547 - 32956497
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaatgatatatat 353  Q
    ||||||||| |||| |||| |||||||||| ||||| ||||||||||||||    
T  32956547 taaatataagtaaaattgactttttagattcattcatttaatgatatatat 32956497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 24350816 - 24350861
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||||||    
T  24350816 ttaaatataagtaaaattgattttttagattcattcatttaatgat 24350861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 29076535 - 29076584
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgatatat 351  Q
    |||||||||| |||| ||||| |||||| || ||||||||||||||||||    
T  29076535 ttaaatataagtaaaattgatcttttaggttcattcaattaatgatatat 29076584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 32146474 - 32146519
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    |||||||||| ||||||| | |||||| ||||||||||||||||||    
T  32146474 ttaaatataagtaaattttactttttaaatttattcaattaatgat 32146519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 34935532 - 34935593
Alignment:
Q  286 tatactctctctgttcttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||| ||| ||||||||||  |||||| | ||||||| || ||||||||||||||    
T  34935532 tatactctctccgtttttaaatataagcaaattttactttttaggttcattcaattaatgat 34935593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 40326448 - 40326493
Alignment:
Q  302 ttaaatataaataaatttgattttttagatttattcaattaatgat 347  Q
    ||||||||||||||| |||| ||||| |||| ||||||||||||||    
T  40326448 ttaaatataaataaaattgacttttttgattcattcaattaatgat 40326493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 587 - 632
Alignment:
Q  142 ccgctggacaaatagttgtccccaactaatgcagtggacaaaaaag 187  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||    
T  587 ccgctggacaaaaagttgtccccaactaaagtggtggacaaaaaag 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 22681 - 22722
Alignment:
Q  303 taaatataaataaatttgattttttagatttattcaattaat 344  Q
    ||||||||||||||||| |||||||||||| ||| |||||||    
T  22681 taaatataaataaattttattttttagattcatttaattaat 22722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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