View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_25 (Length: 371)

Name: NF14649_low_25
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_25
NF14649_low_25
[»] scaffold0003 (2 HSPs)
scaffold0003 (46-353)||(41667-41975)
scaffold0003 (53-353)||(35004-35305)
[»] chr6 (3 HSPs)
chr6 (46-353)||(27445383-27445691)
chr6 (46-353)||(20909306-20909612)
chr6 (46-353)||(20923754-20924060)
[»] chr8 (3 HSPs)
chr8 (46-353)||(42312420-42312726)
chr8 (236-272)||(8333302-8333338)
chr8 (236-272)||(15581194-15581230)
[»] chr1 (2 HSPs)
chr1 (46-353)||(41326204-41326510)
chr1 (46-126)||(47246912-47246992)
[»] chr7 (1 HSPs)
chr7 (244-351)||(11504750-11504856)
[»] chr3 (2 HSPs)
chr3 (168-267)||(50717647-50717745)
chr3 (168-267)||(50795103-50795201)
[»] chr5 (1 HSPs)
chr5 (236-272)||(11909949-11909985)


Alignment Details
Target: scaffold0003 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 353
Target Start/End: Original strand, 41667 - 41975
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 144  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  41667 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 41766  T
Q  145 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 244  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  41767 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 41866  T
Q  245 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgc 344  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||    
T  41867 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgc 41966  T
Q  345 ataggagca 353  Q
    |||||||||    
T  41967 ataggagca 41975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 53 - 353
Target Start/End: Original strand, 35004 - 35305
Alignment:
Q  53 cactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgtcttctgc 151  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||   |  ||| | |||||     
T  35004 cactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctttattttctgt 35103  T
Q  152 tggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgct 251  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35104 tggagcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgct 35203  T
Q  252 gcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggag 351  Q
    |||||||||||||||    ||||||||||||||||  |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35204 gcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggag 35303  T
Q  352 ca 353  Q
    ||    
T  35304 ca 35305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 353
Target Start/End: Complemental strand, 27445691 - 27445383
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaa-tttgt 144  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||| || | |  ||| |    
T  27445691 gatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctttat 27445592  T
Q  145 cttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagct 244  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||    
T  27445591 tttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggct 27445492  T
Q  245 aattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgc 344  Q
    ||||||||||||||| ||||||    ||||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||    
T  27445491 aattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgc 27445392  T
Q  345 ataggagca 353  Q
    |||||||||    
T  27445391 ataggagca 27445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 46 - 353
Target Start/End: Original strand, 20909306 - 20909612
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 145  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20909306 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20909405  T
Q  146 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 245  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20909406 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20909505  T
Q  246 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 345  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  20909506 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 20909604  T
Q  346 taggagca 353  Q
    ||||||||    
T  20909605 taggagca 20909612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 46 - 353
Target Start/End: Original strand, 20923754 - 20924060
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 145  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| |||||| ||||  |||| |||||| |  ||||||   ||  |     
T  20923754 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgattcttcatt 20923853  T
Q  146 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 245  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||   |||  ||||    
T  20923854 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggcta 20923953  T
Q  246 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 345  Q
    ||| |||||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  20923954 attcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 20924052  T
Q  346 taggagca 353  Q
    ||||||||    
T  20924053 taggagca 20924060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 46 - 353
Target Start/End: Original strand, 42312420 - 42312726
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 145  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||  ||||  |||| |||||| || ||||||   ||  |     
T  42312420 gatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcatt 42312519  T
Q  146 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 245  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   |||  ||||    
T  42312520 ttctgctagaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggcta 42312619  T
Q  246 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 345  Q
    ||| |||||||| ||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  42312620 atttctgcttcatagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 42312718  T
Q  346 taggagca 353  Q
    ||||||||    
T  42312719 taggagca 42312726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 8333338 - 8333302
Alignment:
Q  236 atgttagctaattgctgcttcagagtgcccttcccct 272  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  8333338 atgttggctaattgctgcttcagagtgccctttccct 8333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 15581194 - 15581230
Alignment:
Q  236 atgttagctaattgctgcttcagagtgcccttcccct 272  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15581194 atgttagctaattgctgcttcagagtaccctttccct 15581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 46 - 353
Target Start/End: Original strand, 41326204 - 41326510
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaatagagctgatatgaaaatttgtc 145  Q
    |||| ||||||||||||||||||||| ||||||||| |||| ||||||| |||||| |||||| ||||  | || |||||| || ||||||   ||  |     
T  41326204 gatgaatcactcaagcttggatggatttcatttaaattcttccaaaaataaaaatactacttcagaaagcttattaatagaactaatatgattcttcatt 41326303  T
Q  146 ttctgctggaacaaaatctgtttggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagcta 245  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||   | |  |  |    
T  41326304 ttctgctggaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaa 41326403  T
Q  246 attgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgca 345  Q
    ||| || ||||||||| || || | | ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||    
T  41326404 attcctacttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgca 41326502  T
Q  346 taggagca 353  Q
    ||||||||    
T  41326503 taggagca 41326510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 47246992 - 47246912
Alignment:
Q  46 gatggatcactcaagcttggatggatgtcatttaaagtcttacaaaaatcaaaatattacttcggaaaaatcatcaataga 126  Q
    |||| ||||||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||  |||| ||||||    
T  47246992 gatgaatcactcaagcttggatggatttcatttaaagccttccaaaaataaaaatactacttcagaaagctcattaataga 47246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 351
Target Start/End: Complemental strand, 11504856 - 11504750
Alignment:
Q  244 taattgctgcttcagagtgcccttcccctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtg 343  Q
    |||||||||||| |||||||| || ||||||| ||||| | ||| |||||||||| || |||||||||||  |||||||||| |   |||||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 11504758  T
Q  344 cataggag 351  Q
    ||||||||    
T  11504757 cataggag 11504750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 50717745 - 50717647
Alignment:
Q  168 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 267  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50717745 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50717647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 50795103 - 50795201
Alignment:
Q  168 tggagagaaaaggaagcaatagtaagataacacttatgaatgaactaaaaatatatgcaaacaccagcatgttagctaattgctgcttcagagtgccctt 267  Q
    ||||| ||||||||| ||||| ||||||||||||||  || |||||||||| ||||||||||||||  ||||| || ||||| || ||| | ||||||||    
T  50795103 tggagtgaaaaggaatcaataataagataacactta-caaagaactaaaaaaatatgcaaacaccaatatgttggcgaattgatgattcggtgtgccctt 50795201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 11909949 - 11909985
Alignment:
Q  236 atgttagctaattgctgcttcagagtgcccttcccct 272  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  11909949 atgttggctaattgctgcttcagagtgccctttccct 11909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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