View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_28 (Length: 365)

Name: NF14649_low_28
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_28
NF14649_low_28
[»] chr2 (21 HSPs)
chr2 (55-350)||(36445398-36445693)
chr2 (1-56)||(30486343-30486398)
chr2 (1-54)||(20553064-20553117)
chr2 (3-54)||(3668113-3668164)
chr2 (1-56)||(32360867-32360922)
chr2 (1-54)||(22068320-22068373)
chr2 (1-54)||(31438779-31438832)
chr2 (100-191)||(9710127-9710218)
chr2 (95-214)||(12130557-12130676)
chr2 (3-54)||(27856396-27856447)
chr2 (1-54)||(44588035-44588088)
chr2 (95-214)||(88708-88827)
chr2 (4-55)||(22887886-22887937)
chr2 (95-214)||(34695823-34695942)
chr2 (95-214)||(34718235-34718354)
chr2 (1-55)||(31390145-31390199)
chr2 (5-54)||(4381932-4381981)
chr2 (1-54)||(26387064-26387117)
chr2 (1-54)||(34442533-34442585)
chr2 (17-57)||(1870459-1870499)
chr2 (1-37)||(6580322-6580358)
[»] chr7 (19 HSPs)
chr7 (95-214)||(29200874-29200993)
chr7 (95-214)||(16732082-16732201)
chr7 (95-214)||(17710216-17710335)
chr7 (1-55)||(24438610-24438664)
chr7 (100-191)||(9328526-9328617)
chr7 (1-56)||(24798401-24798456)
chr7 (99-214)||(30824417-30824532)
chr7 (100-214)||(17877547-17877661)
chr7 (95-181)||(24251621-24251707)
chr7 (105-214)||(22289390-22289499)
chr7 (1-54)||(42044294-42044346)
chr7 (105-181)||(3275216-3275292)
chr7 (1-56)||(4628699-4628754)
chr7 (3-54)||(34606396-34606447)
chr7 (1-55)||(29993486-29993540)
chr7 (17-55)||(31320383-31320421)
chr7 (17-55)||(35791653-35791691)
chr7 (5-54)||(34333420-34333469)
chr7 (136-181)||(47580057-47580102)
[»] chr3 (29 HSPs)
chr3 (95-214)||(27747604-27747723)
chr3 (1-56)||(10617282-10617337)
chr3 (1-54)||(39074551-39074604)
chr3 (5-54)||(43787008-43787057)
chr3 (5-54)||(52520818-52520867)
chr3 (95-214)||(2615632-2615751)
chr3 (3-54)||(18014807-18014858)
chr3 (95-214)||(53497181-53497300)
chr3 (1-55)||(272353-272407)
chr3 (4-54)||(2938040-2938090)
chr3 (1-55)||(6842752-6842806)
chr3 (1-55)||(46352767-46352821)
chr3 (1-47)||(49893464-49893510)
chr3 (105-214)||(27608832-27608941)
chr3 (105-214)||(34497301-34497410)
chr3 (105-214)||(55199660-55199769)
chr3 (3-47)||(858724-858768)
chr3 (6-54)||(43269739-43269787)
chr3 (1-56)||(7468543-7468597)
chr3 (17-56)||(27144108-27144147)
chr3 (132-191)||(31341681-31341740)
chr3 (4-54)||(4168319-4168369)
chr3 (4-54)||(40362580-40362630)
chr3 (17-54)||(23516590-23516627)
chr3 (1-54)||(48725404-48725457)
chr3 (100-172)||(647094-647166)
chr3 (18-54)||(36545128-36545164)
chr3 (18-54)||(36563150-36563186)
chr3 (1-49)||(42548228-42548275)
[»] chr4 (32 HSPs)
chr4 (95-216)||(49951460-49951581)
chr4 (95-214)||(37245771-37245890)
chr4 (1-55)||(4268821-4268875)
chr4 (105-214)||(51259458-51259567)
chr4 (3-54)||(16820987-16821038)
chr4 (95-214)||(18442066-18442185)
chr4 (1-60)||(43944640-43944698)
chr4 (95-214)||(21321678-21321798)
chr4 (4-55)||(6164229-6164280)
chr4 (95-190)||(24989853-24989948)
chr4 (3-54)||(29591324-29591375)
chr4 (95-214)||(32576967-32577086)
chr4 (3-54)||(54054664-54054715)
chr4 (16-54)||(37402759-37402797)
chr4 (105-191)||(56065805-56065891)
chr4 (5-54)||(16536185-16536234)
chr4 (1-54)||(18067879-18067932)
chr4 (96-181)||(26422522-26422607)
chr4 (1-54)||(36395232-36395285)
chr4 (95-191)||(2065025-2065121)
chr4 (4-55)||(12356380-12356431)
chr4 (100-191)||(28426355-28426446)
chr4 (95-214)||(29655585-29655704)
chr4 (100-191)||(49119324-49119415)
chr4 (95-214)||(51734891-51735010)
chr4 (136-214)||(41835271-41835349)
chr4 (4-54)||(43202384-43202433)
chr4 (1-47)||(50619219-50619264)
chr4 (1-54)||(32217177-32217230)
chr4 (5-54)||(33108673-33108722)
chr4 (3-48)||(46688230-46688275)
chr4 (3-55)||(54897443-54897495)
[»] chr8 (15 HSPs)
chr8 (1-56)||(34228815-34228870)
chr8 (58-214)||(11870413-11870568)
chr8 (4-56)||(16394059-16394111)
chr8 (1-69)||(27988485-27988552)
chr8 (1-69)||(28045787-28045854)
chr8 (1-47)||(2805267-2805313)
chr8 (3-53)||(30675574-30675624)
chr8 (5-54)||(168603-168652)
chr8 (95-191)||(477975-478071)
chr8 (4-55)||(7304517-7304568)
chr8 (4-55)||(16888543-16888594)
chr8 (1-54)||(4537744-4537797)
chr8 (3-55)||(9537823-9537875)
chr8 (18-58)||(9934563-9934603)
chr8 (4-56)||(43119353-43119404)
[»] chr6 (20 HSPs)
chr6 (100-214)||(21944552-21944666)
chr6 (1-54)||(32929508-32929561)
chr6 (95-215)||(14680310-14680430)
chr6 (1-48)||(32985199-32985246)
chr6 (4-54)||(392232-392282)
chr6 (3-54)||(4215830-4215881)
chr6 (95-214)||(15053094-15053213)
chr6 (3-54)||(34706856-34706907)
chr6 (1-54)||(27433625-27433678)
chr6 (16-52)||(1127964-1128000)
chr6 (4-48)||(3026015-3026059)
chr6 (4-56)||(35044025-35044076)
chr6 (3-54)||(23402273-23402324)
chr6 (95-214)||(28107288-28107407)
chr6 (1-55)||(3515899-3515953)
chr6 (17-54)||(1603997-1604034)
chr6 (1-54)||(2581085-2581138)
chr6 (1-54)||(26467124-26467177)
chr6 (3-55)||(12145116-12145168)
chr6 (3-47)||(20898064-20898107)
[»] chr5 (20 HSPs)
chr5 (1-54)||(34650833-34650886)
chr5 (95-214)||(4268248-4268367)
chr5 (105-214)||(26597386-26597495)
chr5 (95-186)||(11375441-11375532)
chr5 (4-54)||(35132657-35132707)
chr5 (5-54)||(8787476-8787525)
chr5 (1-54)||(11957967-11958020)
chr5 (3-56)||(19647675-19647728)
chr5 (17-64)||(1919622-1919670)
chr5 (100-172)||(22767197-22767269)
chr5 (95-191)||(27292606-27292702)
chr5 (95-214)||(20205104-20205223)
chr5 (95-214)||(25730957-25731076)
chr5 (17-55)||(5471333-5471371)
chr5 (4-54)||(13661944-13661994)
chr5 (4-54)||(40564404-40564454)
chr5 (105-214)||(8388235-8388344)
chr5 (1-54)||(11846205-11846258)
chr5 (95-212)||(32632666-32632783)
chr5 (3-55)||(31467855-31467907)
[»] chr1 (31 HSPs)
chr1 (1-54)||(15227872-15227925)
chr1 (95-214)||(5609488-5609607)
chr1 (3-54)||(21112681-21112732)
chr1 (3-54)||(29210529-29210580)
chr1 (7-54)||(38701937-38701984)
chr1 (1-56)||(47532669-47532724)
chr1 (1-54)||(5694454-5694507)
chr1 (5-54)||(18043299-18043348)
chr1 (1-54)||(29657904-29657957)
chr1 (1-54)||(51065748-51065801)
chr1 (1-53)||(38162983-38163035)
chr1 (5-48)||(12072068-12072111)
chr1 (3-54)||(21117423-21117474)
chr1 (5-56)||(24178461-24178512)
chr1 (5-48)||(42769996-42770039)
chr1 (95-214)||(44527402-44527521)
chr1 (136-214)||(48949684-48949762)
chr1 (4-53)||(13961347-13961396)
chr1 (3-55)||(28725904-28725956)
chr1 (17-55)||(14331784-14331822)
chr1 (1-55)||(30294380-30294434)
chr1 (1-55)||(30657735-30657789)
chr1 (4-54)||(47010129-47010179)
chr1 (9-54)||(14350279-14350323)
chr1 (104-181)||(15240195-15240272)
chr1 (17-54)||(48282859-48282896)
chr1 (3-47)||(3784720-3784764)
chr1 (95-127)||(14485246-14485278)
chr1 (16-56)||(23822521-23822561)
chr1 (95-191)||(25682823-25682919)
chr1 (16-48)||(30664173-30664205)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-57)||(68287-68343)
[»] scaffold0922 (1 HSPs)
scaffold0922 (95-214)||(183-302)
[»] scaffold0446 (1 HSPs)
scaffold0446 (105-191)||(362-448)
[»] scaffold0264 (1 HSPs)
scaffold0264 (4-54)||(23097-23147)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-54)||(53685-53738)
[»] scaffold0188 (1 HSPs)
scaffold0188 (2-54)||(6110-6162)
[»] scaffold0524 (1 HSPs)
scaffold0524 (4-54)||(961-1011)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-55)||(10843-10897)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-55)||(15029-15083)
[»] scaffold0045 (1 HSPs)
scaffold0045 (4-53)||(53358-53407)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 55 - 350
Target Start/End: Original strand, 36445398 - 36445693
Alignment:
Q  55 aactaaaaaatatggtgactaatctaaaatcaggttgtcactagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattg 154  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  36445398 aactaaaaaatatggtgactaatctaaaatcatgttgtccttagttaaagaatgagcaactatgttcgtttgttgtttaataaacttcacctcgaagttg 36445497  T
Q  155 gaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattcggaatcaccacgacacttggacgagattgcttgcccaagtgtagctgaat 254  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36445498 gaatgtaaagagaattgaaaaataatatgagaaacaacaacaaagaactcggaatcaccacgacacttagacgagattgcttgcccaagtgtagctgaat 36445597  T
Q  255 ctgactcaaacacaatccctatgttaactttagattaaggcaaaattacaccatgagttcttaggttaattttagatttcattttggctccctatg 350  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  36445598 ctgactcaaacacaacccctatgttaactttagattaaggcaaaattatactatgagttcttaggttaattttagatttcattttggcttcctatg 36445693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30486343 - 30486398
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  30486343 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccaa 30486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20553064 - 20553117
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  20553064 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 20553117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 3668164 - 3668113
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  3668164 ccttttatagtatgtttaaccagtgccccgagggcaccggttagcaagaccc 3668113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32360922 - 32360867
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||    
T  32360922 tcccttttatggtatgcttaaccaatgccccgggggcaccggttagcaggacccaa 32360867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22068373 - 22068320
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||| |||||    
T  22068373 tcccttttatggtatgcttaaccagtgccccgggggcaccgattagcaggaccc 22068320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31438779 - 31438832
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||| |||||    
T  31438779 tcccttttatggtatgcttaaccagtgccccggggacaccggttagcaggaccc 31438832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 9710218 - 9710127
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  ||||||||    
T  9710218 taaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaa 9710127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 12130557 - 12130676
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||| | |||||| ||||||||  ||||| || |     
T  12130557 ctagctaaagtatgagcaaccatgttcgcttgtctcataacaaacttcacctcgaagttggaatgtaaatataactgataaataatactagaaataatag 12130656  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  12130657 catagaattctgaatcacca 12130676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 27856447 - 27856396
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||| |||||    
T  27856447 ccttttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 27856396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44588035 - 44588088
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||||| |||||    
T  44588035 tcccttttatggtatgcttaacaagtgccccgggggtaccggttagcaggaccc 44588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 88827 - 88708
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||     |||||||||||| | ||| ||||||| |||||  |||||| ||||||||   ||||||| |     
T  88827 ctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgtaaagctaactgataaataatactggaaacaatag 88728  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  88727 catagaattctgaatcacca 88708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 22887886 - 22887937
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||| ||||||    
T  22887886 cttttatggtatgcttaaccagtgctccgggggcaccgattagcatgaccca 22887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 34695823 - 34695942
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||  |||| |||  |||||||| |     
T  34695823 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactggtaaattatactagaaacaatag 34695922  T
Q  195 caaagaattcggaatcacca 214  Q
    || | ||||| |||||||||    
T  34695923 cataaaattctgaatcacca 34695942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 34718235 - 34718354
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||  |||| |||  |||||||| |     
T  34718235 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactggtaaattatactagaaacaatag 34718334  T
Q  195 caaagaattcggaatcacca 214  Q
    || | ||||| |||||||||    
T  34718335 cataaaattctgaatcacca 34718354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31390145 - 31390199
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||||| |||| ||| |||||||| |||||| ||||||    
T  31390145 tcccttttatggtatgcttaacccgtgctccgggggcaccgattagcaggaccca 31390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 4381932 - 4381981
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||||||||||||||||| | |||| |||||||| |||||    
T  4381932 ttttatggtatgcttaaccagtgccccgggagcactggttagcaggaccc 4381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26387117 - 26387064
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||  | |||||||||||| || |||||    
T  26387117 tcccttttatggtatgcttaaccagtgccttgggggcaccggttaacaggaccc 26387064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34442585 - 34442533
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||||||| |||||    
T  34442585 tcccttttatggtatgcttaaccagtg-cccgggggcatcggttagcaggaccc 34442533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 1870499 - 1870459
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagacccaac 57  Q
    |||||||| ||||| |||||||| |||||||||||||||||    
T  1870499 cttaaccattgccctgagggcactggttagcaagacccaac 1870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6580322 - 6580358
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggc 37  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  6580322 tcccttttatggtatgcttaaccagtgccccgggggc 6580358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 29200874 - 29200993
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||||||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  29200874 ctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 29200973  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  29200974 catagaattctgaatcacca 29200993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 16732201 - 16732082
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  16732201 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 16732102  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  16732101 cagagaattctgaatcacca 16732082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 17710335 - 17710216
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  17710335 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 17710236  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  17710235 cagagaattctgaatcacca 17710216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24438610 - 24438664
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  24438610 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccca 24438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 9328526 - 9328617
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  ||||||||    
T  9328526 taaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaagataactgataaataatactagaaacaa 9328617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24798456 - 24798401
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||||| |||||||    
T  24798456 tcccttttatagtatgcttaaccagtgccccgggggcaccagttagcaggacccaa 24798401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 30824417 - 30824532
Alignment:
Q  99 ttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaa 198  Q
    |||| ||||||||||| ||||||| || |    ||| |||||||||||| || ||||||| |||||| |||||| |||||| |  |||||||| |||| |    
T  30824417 ttaaggtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaatgtaaagataactgataaataagactagaaacaataacata 30824516  T
Q  199 gaattcggaatcacca 214  Q
    |||||| |||||||||    
T  30824517 gaattctgaatcacca 30824532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 17877661 - 17877547
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaag 199  Q
    ||||||||||||||| ||| ||| ||||    ||| ||||||||| ||||||||| ||| |||||| |||||| ||||||||  |||||||| | || ||    
T  17877661 taaagtatgagcaaccatggtcgcttgtctcataacaaacttcacctcgaaattgaaatgtaaagataactgataaataatactagaaacaatagcatag 17877562  T
Q  200 aattcggaatcacca 214  Q
    ||||  |||||||||    
T  17877561 aattacgaatcacca 17877547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 24251707 - 24251621
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataata 181  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||    
T  24251707 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 24251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 22289499 - 22289390
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| |||| |||| ||||| ||||||| |||||| |||||||||||||||  |||||||| | || | |||||    
T  22289499 tatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattc 22289400  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  22289399 tgaatcacca 22289390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42044346 - 42044294
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||| |||||    
T  42044346 tcccttttatggtatgtttaaccagtgccccg-gggcaccggttagcatgaccc 42044294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 3275292 - 3275216
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataata 181  Q
    ||||| |||| ||||||| ||||   |||| ||||||||| ||||| ||||||| |||||| |||||||||||||||    
T  3275292 tatgatcaaccatgttcgcttgtctcttaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataata 3275216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4628699 - 4628754
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| ||||||||||||||    ||||||||||||||| |||||||    
T  4628699 tcccttttatggtatgcttaaccagtgccttaggggcaccggttagcaggacccaa 4628754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34606396 - 34606447
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||| |||||    
T  34606396 ccttttatggtatgcttaacccgtgccccgggagcaccggttagcaggaccc 34606447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29993540 - 29993486
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||||||||| ||||  |||| ||||||||| ||||||    
T  29993540 tcccttttatggtatgcttaaccagtgtcccggaggcatcggttagcaggaccca 29993486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 31320383 - 31320421
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  31320383 cttaaccagtgccccgggggcaccggttagcaacaccca 31320421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 35791653 - 35791691
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  35791653 cttaaccagtgccccgggggcaccggttagcaacaccca 35791691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 34333420 - 34333469
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| | |||||| |||||||| ||||||||||||||| |||||    
T  34333420 ttttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 34333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 47580102 - 47580057
Alignment:
Q  136 aaacttcacttcgaaattggaatataaagagaactgaaaaataata 181  Q
    ||||||||| ||||| |||||||||||||| |||||| ||||||||    
T  47580102 aaacttcacctcgaagttggaatataaagataactgataaataata 47580057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 27747604 - 27747723
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||||||||||| ||||   |||| ||||||||| ||||| ||||||| |||||| |||||||||||||||  | |||||| |     
T  27747604 ctagataaagtatgagcaactatgttcgcttgtctcttaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatactaaaaacaatag 27747703  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||  |||||||||    
T  27747704 catagaattttgaatcacca 27747723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10617337 - 10617282
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||    
T  10617337 tcccttttatggtatgcttaacccgtgccccgggggcaccggttagcaggacccaa 10617282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39074551 - 39074604
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  39074551 tcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 39074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 43787008 - 43787057
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  43787008 ttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 43787057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 52520818 - 52520867
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  52520818 ttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 52520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 2615751 - 2615632
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||||||||||||||||||| ||||||||||||    ||| ||||||||  ||||  ||||||| |||| | |||||| ||||||||  | |||||| |     
T  2615751 ctagttaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcatctcgaggttggaatgtaaaaataactgataaataatactaaaaacaatat 2615652  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  2615651 catagaattctgaatcacca 2615632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 18014807 - 18014858
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| |||||| |||||||||| ||||||| |||||||||||||    
T  18014807 ccttttatggtatgcttaatcagtgccccgggggcaccagttagcaagaccc 18014858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 53497300 - 53497181
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||| | ||||||| ||||    ||||||||||||| | ||| ||||||| |||||| |||||| || |||||  |||||||| |     
T  53497300 ctagctaaagtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactgataattaatactagaaacaatag 53497201  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  53497200 catagaattccgaatcacca 53497181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 272353 - 272407
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||| | |||||||| ||||||||||||||| ||||||    
T  272353 tcccttttatggtatgcttaatcggtgccccgggggcaccggttagcaggaccca 272407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 2938090 - 2938040
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  2938090 cttttatggtatgcttaacgagtaccccgagggcaccggttagcaggaccc 2938040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6842752 - 6842806
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||| ||||||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  6842752 tcccatttatggtatgcttaaccagtgccccgggggcagcggttagcaggaccca 6842806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46352767 - 46352821
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||||| ||||||||  |||||||||||||| ||||||    
T  46352767 tcccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccca 46352821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49893464 - 49893510
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||    
T  49893464 tcccttttatggtatgcttaatcagtgccccgggggcaccggttagc 49893510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 27608832 - 27608941
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||||  ||||| ||||||| |||||| |||||||||||||||  |||||||| | || | |||||    
T  27608832 tatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattc 27608931  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  27608932 cgaatcacca 27608941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 34497301 - 34497410
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||||||||||||  || ||||| | || | |||||    
T  34497301 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatactaggaacaatagcataaaattc 34497400  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  34497401 cgaatcacca 34497410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 55199769 - 55199660
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| ||||||  ||||||||||||||  |||||||| | || | |||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatgactgaaaaataatactagaaacaatagcataaaattc 55199670  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  55199669 cgaatcacca 55199660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 858724 - 858768
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||    
T  858724 ccttttatggtatgcttaacccgtgccccgggggcaccggttagc 858768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 43269787 - 43269739
Alignment:
Q  6 tttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||| |||||||||||||||||  |||||||||||||| |||||    
T  43269787 tttatggtatgcttaaccagtgccccggaggcaccggttagcaggaccc 43269739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7468543 - 7468597
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| |||||| |||||||||| | ||||||||||||| |||||||    
T  7468543 tcccttttatggtatgcttaatcagtgccccg-gagcaccggttagcaggacccaa 7468597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 27144108 - 27144147
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  27144108 cttaaccagtgcctcgagggcaccggttaacaagacccaa 27144147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 31341681 - 31341740
Alignment:
Q  132 taataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    ||||||||||||| | ||| ||||||| |||||| |||||| ||||||||| ||||||||    
T  31341681 taataaacttcaccttgaagttggaatgtaaagataactgataaataatattagaaacaa 31341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 4168319 - 4168369
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| |||||||| || ||||| ||||||||||||||| |||||    
T  4168319 cttttatggtatgcttaacccgtaccccgggggcaccggttagcaggaccc 4168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 40362630 - 40362580
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||||||||||||| ||| |||| |||||| |||||    
T  40362630 cttttatggtatgcttaaccagtgccccgggggtaccgattagcaggaccc 40362580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 23516590 - 23516627
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  23516590 cttaaccagtgccccgggggcaccggttagcaacaccc 23516627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48725404 - 48725457
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| |  ||| |||||||| |||||    
T  48725404 tcccttttatggtatgcttaaccagtgccccgggaccacgggttagcaggaccc 48725457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 647094 - 647166
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactga 172  Q
    ||||||||||||||| ||||||||||||    ||| ||| ||||| ||||| ||||||| |||||| ||||||    
T  647094 taaagtatgagcaaccatgttcgtttgtctcctaacaaatttcacctcgaagttggaatgtaaagataactga 647166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 36545164 - 36545128
Alignment:
Q  18 ttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  36545164 ttaaccagtgccccgggggcaccggttaacaagaccc 36545128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36563150 - 36563186
Alignment:
Q  18 ttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  36563150 ttaaccagtgccccgggggcaccggttaacaagaccc 36563186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42548228 - 42548275
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaa 49  Q
    |||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  42548228 tcccttttatggtatgcttaaccagtgctccg-ggacaccggttagcaa 42548275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 49951581 - 49951460
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  49951581 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 49951482  T
Q  195 caaagaattcggaatcaccacg 216  Q
    || ||||||| |||||||||||    
T  49951481 cagagaattctgaatcaccacg 49951460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 37245771 - 37245890
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  37245771 ctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 37245870  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  37245871 catagaattctgaatcacca 37245890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4268875 - 4268821
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  4268875 tcccttttatggtatgattaaccagtgccccgagggcaccggttagcaggaccca 4268821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 51259458 - 51259567
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||||||||||||  |||||||| |||| | |||||    
T  51259458 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaataacataaaattc 51259557  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  51259558 tgaatcacca 51259567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 16820987 - 16821038
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  16820987 ccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 16821038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 18442066 - 18442185
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| |||| |||||||||| || |||||||||    ||| ||||||||| | ||| |||||||||||||| |||||| ||||||||  |||||||| |     
T  18442066 ctagctaaaatatgagcaaccattttcgtttgtctcataacaaacttcaccttgaagttggaatataaagataactgataaataatactagaaacaatag 18442165  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  18442166 catagaattctgaatcacca 18442185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43944640 - 43944698
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaactaa 60  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  43944640 tcccttgtatggtatgcttaaccagtgccc-gagggcaccggttagcaagacccatctaa 43944698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 21321798 - 21321678
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaa-acaaca 193  Q
    |||| ||||||||||||||| ||| ||| ||||   |||||||||||||| | ||| ||||||| |||||  |||||| |||||||||  ||| |||| |    
T  21321798 ctagctaaagtatgagcaaccatgatcgcttgtctcttaataaacttcaccttgaagttggaatgtaaagctaactgataaataatattggaacacaata 21321699  T
Q  194 acaaagaattcggaatcacca 214  Q
    ||| ||||||| |||||||||    
T  21321698 acatagaattctgaatcacca 21321678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 6164229 - 6164280
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||| ||||||    
T  6164229 cttttatggtatgcttaaccagtaccccgaggacaccggttagcaggaccca 6164280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 24989853 - 24989948
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaaca 190  Q
    |||| |||||||| ||||||  |||||||||||   |||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||    
T  24989853 ctagataaagtataagcaaccgtgttcgtttgtctcttaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaaca 24989948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 29591324 - 29591375
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||| |||||    
T  29591324 ccttttatggtatgcttaactagtgccccgggggcaccggttagcaggaccc 29591375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 32576967 - 32577086
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  | ||||||       
T  32576967 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactataaacaatcg 32577066  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  32577067 catagaattctgaatcacca 32577086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 54054664 - 54054715
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||| |||||    
T  54054664 ccttttatggtatgcttaaccagtgccccgggggcaccggttggcaggaccc 54054715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 37402797 - 37402759
Alignment:
Q  16 gcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  37402797 gcttaaccagtgccccgagggcaccggttagcatgaccc 37402759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 56065891 - 56065805
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||||||||| ||||||| ||||    ||| ||||||||  ||||| ||||||| |||||| |||||||||||||||| ||||||||    
T  56065891 tatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaacaa 56065805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 16536185 - 16536234
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||  |||||||||||||||| ||||||||||||||| |||||    
T  16536185 ttttatggtattcttaaccagtgccccgggggcaccggttagcaggaccc 16536234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18067932 - 18067879
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||||    
T  18067932 tcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 18067879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 26422522 - 26422607
Alignment:
Q  96 tagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataata 181  Q
    ||||||||||||||||||| ||||| || |||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||    
T  26422522 tagttaaagtatgagcaaccatgtttgtctgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 26422607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36395232 - 36395285
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||||| |||||    
T  36395232 tcccttttatggtatgcttaaccagtgccctgggggcaccagttagcaggaccc 36395285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 2065121 - 2065025
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||| ||||||||||||||| ||||||||||||    ||| ||||||||| | ||| ||| ||| |||||| |||||| ||||||||  ||||||||    
T  2065121 ctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcaccttgaagttgaaatgtaaagataactgataaataatactagaaacaa 2065025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12356380 - 12356431
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    ||||||||||| ||||||||||||  ||| ||||||||||||||| ||||||    
T  12356380 cttttatggtatgcttaaccagtgttccgggggcaccggttagcaggaccca 12356431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 28426446 - 28426355
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    ||||||||||||||| ||||||| ||||    ||| ||||||| | ||||| ||||||| |||||| |||||| ||||||||  ||||||||    
T  28426446 taaagtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttggaatgtaaagataactgataaataatactagaaacaa 28426355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 29655585 - 29655704
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||  ||||| | | ||| |||||| | |||| ||||||||  |||||||| ||    
T  29655585 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagtggaaatgtaaagatagctgataaataatactagaaacaataa 29655684  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  29655685 catagaattctgaatcacca 29655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 49119324 - 49119415
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    ||||||||||||||| ||||||| ||||    ||| ||||||| | ||||| ||||||| |||||| |||||| ||||||||  ||||||||    
T  49119324 taaagtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttggaatgtaaagataactgataaataatactagaaacaa 49119415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 51734891 - 51735010
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||  ||||    ||| ||||||||| ||||| ||||||| |||||| ||| || ||||||||  |||||||| |     
T  51734891 ctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagataacagataaataatactagaaacaatat 51734990  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||  |||||||||    
T  51734991 catagaattatgaatcacca 51735010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 41835271 - 41835349
Alignment:
Q  136 aaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattcggaatcacca 214  Q
    ||||||||  ||||||||||||| |||||| |||||| ||||||||  |||||||| | || || |||| |||||||||    
T  41835271 aaacttcatctcgaaattggaatgtaaagataactgataaataatactagaaacaatagcataggattccgaatcacca 41835349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 43202433 - 43202384
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||| |||||    
T  43202433 cttttatggtaagcttaaccagtg-cccgggggcaccggttagcaggaccc 43202384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50619219 - 50619264
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||    
T  50619219 tcccttttatggtatgcttaaccagtgcccag-gggcaccggttagc 50619264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32217177 - 32217230
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| |||||||| ||||||||  ||||||||||| || |||||    
T  32217177 tcccttttatggtatgcttaacctgtgccccggaggcaccggttaacaggaccc 32217230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 33108722 - 33108673
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| |||||||| ||||||||  |||||||||||||| |||||    
T  33108722 ttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 33108673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 46688275 - 46688230
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagca 48  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||    
T  46688275 ccttttatggtatgcttaaccagtgctctgggggcaccggttagca 46688230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 54897443 - 54897495
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||| | |||||||||| ||||  |||||||||||||| ||||||    
T  54897443 ccttttatggtatgtttaaccagtgtcccggaggcaccggttagcaggaccca 54897495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34228815 - 34228870
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  34228815 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccaa 34228870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 11870568 - 11870413
Alignment:
Q  58 taaaaaatatggtgactaatctaaaatcaggttgtcactagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaa 157  Q
    ||||||||||||||| ||  | || | ||||||| | |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| ||||| || |||    
T  11870568 taaaaaatatggtgattagcccaagaacaggttgcc-ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttagaa 11870470  T
Q  158 tataaagagaactgaaaaataatatgagaaacaacaacaaagaattcggaatcacca 214  Q
    | |||||| |||||| ||||||||  |||||||| | || |||| || |||||||||    
T  11870469 tgtaaagataactgataaataatactagaaacaatagcatagaaatccgaatcacca 11870413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 16394111 - 16394059
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||    
T  16394111 cttttatggtatgcttaaccaatgccccgggggcaccggttagcaggacccaa 16394059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27988552 - 27988485
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaactaaaaaatatgg 69  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||| ||||| | ||| ||||||||    
T  27988552 tcccttttatggtatgcttaaccagtg-cccgggggcaccggttagcaggaccctattaagaaatatgg 27988485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28045854 - 28045787
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaactaaaaaatatgg 69  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||| ||||| | ||| ||||||||    
T  28045854 tcccttttatggtatgcttaaccagtg-cccgggggcaccggttagcaggaccctattaagaaatatgg 28045787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2805313 - 2805267
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||    
T  2805313 tcccttttatggtatgcttaaccagtgccccggaggcaccggttagc 2805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 30675624 - 30675574
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacc 53  Q
    |||||||||||| ||||||||||||||||| || |||||||||||| ||||    
T  30675624 ccttttatggtatgcttaaccagtgccccggggacaccggttagcaggacc 30675574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 168603 - 168652
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| |||||    
T  168603 ttttatggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 477975 - 478071
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||| ||| ||||||||||| ||||||| ||||    ||| ||||||||| | ||| ||||||| |||||| |||||| ||||||||| ||||||||    
T  477975 ctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaagataactgataaataatattagaaacaa 478071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 7304568 - 7304517
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||| | ||||||    
T  7304568 cttttatggtatgcttaaccagtgctccgggggcaccggttagtaggaccca 7304517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16888594 - 16888543
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    ||||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  16888594 cttttgtggtatgcttaaccaatgccccgggggcaccggttagcaggaccca 16888543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4537797 - 4537744
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| |||||||| |||||||   |||||||||||||| |||||    
T  4537797 tcccttttatggtatgcttaacctgtgccccagaggcaccggttagcaggaccc 4537744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9537875 - 9537823
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||| |||||||||||| ||||  | |||||||||||| ||||||    
T  9537875 ccttttatggtatgcttaaccagtgtcccggagacaccggttagcaggaccca 9537823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 9934563 - 9934603
Alignment:
Q  18 ttaaccagtgccccgagggcaccggttagcaagacccaact 58  Q
    |||||| |||||||| ||||||||||||||| |||||||||    
T  9934563 ttaacccgtgccccgggggcaccggttagcaggacccaact 9934603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 43119353 - 43119404
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||| |||||||    
T  43119353 cttttatggtatgcttaaccaatggcccg-gggcaccggttagcaggacccaa 43119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 21944552 - 21944666
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaag 199  Q
    ||||||||||||||| ||| ||| ||||  ||||| ||||||||| ||||| |||||||||||| | |||||| ||||||||  |||||||| | || ||    
T  21944552 taaagtatgagcaacaatgatcgcttgtcttttaacaaacttcacatcgaagttggaatataaaaataactgataaataatactagaaacaatagcatag 21944651  T
Q  200 aattcggaatcacca 214  Q
    ||||| |||| ||||    
T  21944652 aattctgaattacca 21944666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32929561 - 32929508
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  32929561 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 32929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 14680430 - 14680310
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||||||||||||||||||| |||||||  |||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  14680430 ctagttaaagtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 14680331  T
Q  195 caaagaattcggaatcaccac 215  Q
    || ||||||  ||||||||||    
T  14680330 cagagaattttgaatcaccac 14680310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32985246 - 32985199
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagca 48  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  32985246 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagca 32985199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 392232 - 392282
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  392232 cttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4215830 - 4215881
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||| |||||    
T  4215830 ccttttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccc 4215881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 15053094 - 15053213
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||  ||||| | ||||  | ||| ||||||||| ||||||||||||| |||| | || ||| ||||||||| | || |||||     
T  15053094 ctagctaaagtatgagcaatcatgtttgcttgtcttctaacaaacttcacctcgaaattggaatgtaaatataattgataaataatattataagcaacag 15053193  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  15053194 catagaattccgaatcacca 15053213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34706856 - 34706907
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  34706856 ccttttttcgtatgcttaaccagtgccccgggggcaccggttagcaagaccc 34706907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27433625 - 27433678
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||||    
T  27433625 tcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 27433678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 1127964 - 1128000
Alignment:
Q  16 gcttaaccagtgccccgagggcaccggttagcaagac 52  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1127964 gcttaaccagtgccccgagggcaccggttagtaagac 1128000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3026059 - 3026015
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagca 48  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  3026059 cttttatggtatgcttaatcagtgtcccgagggcaccggttagca 3026015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 35044025 - 35044076
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    ||||||||||| ||||||||||||||||| |||||||||||| || |||||||    
T  35044025 cttttatggtatgcttaaccagtgccccg-gggcaccggttaacatgacccaa 35044076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 23402273 - 23402324
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| |||||||| ||||||||  |||||||||||||| |||||    
T  23402273 ccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 23402324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 28107407 - 28107288
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||| | ||||    ||| ||||| ||  ||||| ||||||| |||||| |||| | ||||||||  |||||||| ||    
T  28107407 ctagctaaagtatgagcaaccatgtttggttgtctcctaacaaactacagctcgaagttggaatgtaaagataactaataaataatactagaaacaataa 28107308  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  28107307 catagaattctgaatcacca 28107288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3515899 - 3515953
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| | |||||| |||||||  ||||||||||||||| ||||||    
T  3515899 tcccttttatggtatgtttaacctgtgccccaggggcaccggttagcaggaccca 3515953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1604034 - 1603997
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  1604034 cttaaccagtgccccgggggcaccggttagcaacaccc 1603997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2581085 - 2581138
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||| | ||||| | ||||||||||||| |||||    
T  2581085 tcccttttatggtatgcttaaccaataccccgggagcaccggttagcaggaccc 2581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26467177 - 26467124
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| |  ||||||||||||||  |||||||||||||| |||||    
T  26467177 tcccttttatggtatgtctaaccagtgccccggaggcaccggttagcatgaccc 26467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 12145168 - 12145116
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||| ||| ||||||||||||| |||  |||||||||||||| ||||||    
T  12145168 ccttttatagtatgcttaaccagtgctccggaggcaccggttagcaggaccca 12145116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 20898064 - 20898107
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||    
T  20898064 ccttttatggtatgcttaacctgtgccccg-gggcaccggttagc 20898107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34650886 - 34650833
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  34650886 tcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 34650833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 4268367 - 4268248
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||||||||||||| | ||| ||||||| |||||| |||||| || |||||  |||||||| |     
T  4268367 ctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactgagaattaatactagaaacaatag 4268268  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  4268267 catagaattccgaatcacca 4268248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 26597386 - 26597495
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| || ||||||||||||  |||||||| |||| | |||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaattc 26597485  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  26597486 cgaatcacca 26597495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 11375441 - 11375532
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgaga 186  Q
    |||| ||||||||||||||||||||||| ||||   |||| ||||||||| ||| | ||||||| |||||| |||| | |||||||| ||||    
T  11375441 ctagctaaagtatgagcaactatgttcgcttgtctcttaacaaacttcacctcggagttggaatgtaaagataactcataaataatacgaga 11375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 35132657 - 35132707
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||    
T  35132657 cttttatggtatgcttaaccaatgccccgggggcaccggttagcaggaccc 35132707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 8787476 - 8787525
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| |||||||| |||||||| ||||||||||||||| |||||    
T  8787476 ttttatggtatgcttaacctgtgccccgggggcaccggttagcaggaccc 8787525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11958020 - 11957967
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| | ||||||||||||||||  ||||||||||||||| |||||    
T  11958020 tcccttttatggcatgcttaaccagtgccccaggggcaccggttagcaggaccc 11957967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 19647728 - 19647675
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||  |||||||    
T  19647728 ccttttatggtatgcttaacccgtgccccgggggcaccggttagccggacccaa 19647675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 1919622 - 1919670
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccc-aactaaaaaa 64  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  1919622 cttaaccagtgccccgggggcaccggttagcaacacccaaactaaaaaa 1919670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 22767197 - 22767269
Alignment:
Q  100 taaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactga 172  Q
    ||||||||||||||| ||||||||||||    ||| ||||||||| ||||| ||||||| |||||| ||||||    
T  22767197 taaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactga 22767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 27292702 - 27292606
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||| ||||||||||||||| ||||||| ||||    | ||||||||||||| ||| ||||||| |||||| |||||| || |||||  ||||||||    
T  27292702 ctagctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcactttgaagttggaatgtaaagataactgataattaatactagaaacaa 27292606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 20205223 - 20205104
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| ||||    ||| ||||||||| | ||| ||||||| |||||| |||||| | ||||||  |||||||| |     
T  20205223 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctagaagttggaatgtaaagataactgatatataatactagaaacaatag 20205124  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||  |||||||||    
T  20205123 catagaattttgaatcacca 20205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 25731076 - 25730957
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||||||||| ||||||| || |    ||| ||||||||| | ||| ||||||| |||| | |||||| ||||||||  |||||||| ||    
T  25731076 ctagctaaagtatgagcaaccatgttcgcttatctcctaacaaacttcacctggaagttggaatgtaaatataactgataaataatactagaaacaataa 25730977  T
Q  195 caaagaattcggaatcacca 214  Q
    || |||||||  ||||||||    
T  25730976 catagaattcttaatcacca 25730957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 5471333 - 5471371
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  5471333 cttaaccattgccctgagggcaccggttagcaagaccca 5471371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 13661944 - 13661994
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| |||||||| ||||||||  |||||||||||||| |||||    
T  13661944 cttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccc 13661994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 40564454 - 40564404
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||||| | |||| |||||||||||||||| |||||    
T  40564454 cttttatggtatgcttaaccaataccccaagggcaccggttagcaggaccc 40564404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 8388344 - 8388235
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattc 204  Q
    |||||||||| ||||||| ||||    ||| ||||||| | ||||| ||||||| |||||| |||||||||||||||   ||||||| | || | |||||    
T  8388344 tatgagcaaccatgttcgcttgtctcctaacaaacttcccctcgaagttggaatgtaaagaaaactgaaaaataatactggaaacaatagcataaaattc 8388245  T
Q  205 ggaatcacca 214  Q
     |||||||||    
T  8388244 tgaatcacca 8388235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11846205 - 11846258
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||| |||||||||||||||| ||||||  |||||||| |||||    
T  11846205 tcccttttatagtatgcttaaccagtgcccctagggcatgggttagcaggaccc 11846258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 32632783 - 32632666
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||||||||| ||||||||||||| ||||    |||||||| |||| ||||| || |||| |||||| |||  | ||||||||| ||||||||       
T  32632783 ctagctaaagtatgggcaactatgttcgcttgtctcataataaacgtcacctcgaagttagaatgtaaagataacaaataaataatattagaaacaatgt 32632684  T
Q  195 caaagaattcggaatcac 212  Q
    || ||||||| |||||||    
T  32632683 catagaattctgaatcac 32632666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31467855 - 31467907
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||| | ||| ||||||||||||||||  || |||||||||||||||||||    
T  31467855 cctttttttgtatgcttaaccagtgccccagggacaccggttagcaagaccca 31467907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15227872 - 15227925
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  15227872 tcccttttatggtatgcttaaccagtgccccggaggcaccggttagcaagaccc 15227925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 5609607 - 5609488
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||| ||| ||||||||||| ||||||| ||||    ||| ||||||||| ||||| ||||||| |||||| |||||| ||||||||  |||||||| |     
T  5609607 ctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatag 5609508  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  5609507 catagaattctgaatcacca 5609488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 21112732 - 21112681
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  21112732 ccttttatggtatgcttaactagtgccccgagggcaccggttagcaggaccc 21112681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 29210529 - 29210580
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  29210529 ccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 29210580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 38701984 - 38701937
Alignment:
Q  7 ttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  38701984 ttatggtatgcttaaccagtgccccgagggcaccggttagcaggaccc 38701937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47532724 - 47532669
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  47532724 tcccttttatggtatgcttaaccaatgccccgaagacaccggttagcaagacccaa 47532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5694454 - 5694507
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||    
T  5694454 tcccttttatggtatgcttaaccagtgctccgggggcaccggttagcaggaccc 5694507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 18043299 - 18043348
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  18043299 ttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccc 18043348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29657904 - 29657957
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||| |||||    
T  29657904 tcccttttatggtatgcttaaccagtgccctgggggcaccggttagcaggaccc 29657957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 51065801 - 51065748
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  51065801 tcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccc 51065748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38162983 - 38163035
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacc 53  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  38162983 tcccttttatggtatgcttaacccgtgccccgggggcaccggttagcaggacc 38163035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12072111 - 12072068
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagca 48  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  12072111 ttttatggtatgcttaaccagtgccccgggggcaccggttagca 12072068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 21117474 - 21117423
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||| |||||||  |||||||||||||||||||||||| |||||    
T  21117474 ccttttatggtatgcttaacttgtgccccgagggcaccggttagcaggaccc 21117423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 24178512 - 24178461
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  |||||||    
T  24178512 ttttatggtatgcttaaccagtgccccgggggcaccggttagccggacccaa 24178461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 42770039 - 42769996
Alignment:
Q  5 ttttatggtacgcttaaccagtgccccgagggcaccggttagca 48  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  42770039 ttttatggtatgcttaaccagtgccccgggggcaccggttagca 42769996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 44527521 - 44527402
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    |||||||||||||||||| | ||||||| ||||    ||||||||||||| | ||| ||||||| |||||| |||| | || |||||  |||||||| |     
T  44527521 ctagttaaagtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaagataactaataattaatactagaaacaatag 44527422  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||||||||    
T  44527421 catagaattccgaatcacca 44527402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 48949684 - 48949762
Alignment:
Q  136 aaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaacaaagaattcggaatcacca 214  Q
    ||||||||| ||||| ||||||| |||||| |||||||||||||||  |||||||| | || | ||||| |||||||||    
T  48949684 aaacttcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattccgaatcacca 48949762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13961347 - 13961396
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacc 53  Q
    ||||||||||| ||||||||||||| || |||||||||||||||| ||||    
T  13961347 cttttatggtatgcttaaccagtgctccaagggcaccggttagcaggacc 13961396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 28725956 - 28725904
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||| | ||| ||||||||||||||||| || |||||||||||||||||||    
T  28725956 ccttttttcgtatgcttaaccagtgccccggggacaccggttagcaagaccca 28725904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 14331822 - 14331784
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  14331822 cttaaccattgccctgagggcaccggttagcaagaccca 14331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30294434 - 30294380
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||||| |||| ||| || |||||||||||| ||||||    
T  30294434 tcccttttatggtatgcttaacctgtgctccggggacaccggttagcaggaccca 30294380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30657735 - 30657789
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| ||||||||||| |||||  ||||||| |||||| ||||||    
T  30657735 tcccttttatggtatgcttaaccagtaccccggaggcaccgattagcaggaccca 30657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 47010129 - 47010179
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| ||||||||||||| ||  ||||||||||||||| |||||    
T  47010129 cttttatggtatgcttaaccagtgctccaggggcaccggttagcaggaccc 47010179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 14350323 - 14350279
Alignment:
Q  9 atggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||    
T  14350323 atggtatgcttaaccagtgccccg-gggcaccggttagcaggaccc 14350279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 15240272 - 15240195
Alignment:
Q  104 gtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataata 181  Q
    |||||| |||| |||||||||||| ||| ||||||||||||||| ||| | |||| |||||  |||| | ||||||||    
T  15240272 gtatgaacaaccatgttcgtttgtcgttaaataaacttcacttcaaaactagaatgtaaaggcaactaagaaataata 15240195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 48282896 - 48282859
Alignment:
Q  17 cttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  48282896 cttaaccagtgccccgggggcaccggttaacaagaccc 48282859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3784764 - 3784720
Alignment:
Q  3 ccttttatggtacgcttaaccagtgccccgagggcaccggttagc 47  Q
    |||||||||||| |||||||| ||| |||| ||||||||||||||    
T  3784764 ccttttatggtatgcttaacccgtgtcccgggggcaccggttagc 3784720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 14485278 - 14485246
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  14485278 ctagctaaagtatgagcaactatgttcgtttgt 14485246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 23822561 - 23822521
Alignment:
Q  16 gcttaaccagtgccccgagggcaccggttagcaagacccaa 56  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  23822561 gcttaaccaatgccccgggggcaccggttagcatgacccaa 23822521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 25682919 - 25682823
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||| ||||||||||||||| ||| ||| ||||    ||| ||||||||| | ||| || |||| |||||| |||||||||||||||  ||||||||    
T  25682919 ctagctaaagtatgagcaaccatgctcgcttgtctcctaacaaacttcaccttgaagttagaatgtaaagataactgaaaaataatactagaaacaa 25682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 30664205 - 30664173
Alignment:
Q  16 gcttaaccagtgccccgagggcaccggttagca 48  Q
    ||||||||||||||||| |||||||||||||||    
T  30664205 gcttaaccagtgccccgtgggcaccggttagca 30664173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 68343 - 68287
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacccaac 57  Q
    |||||||||||||| ||||||||||| |||||| |||| ||||||||| ||||||||    
T  68343 tcccttttatggtatgcttaaccagtaccccgaaggcatcggttagcaggacccaac 68287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 183 - 302
Alignment:
Q  95 ctagttaaagtatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaacaa 194  Q
    ||||||||||||||||||||  |||||| ||||    ||| ||||||||| ||||| ||||||| ||| || |||||| ||||||||  |||||||| |     
T  183 ctagttaaagtatgagcaaccgtgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaggataactgataaataatactagaaacaatag 282  T
Q  195 caaagaattcggaatcacca 214  Q
    || ||||||| |||| ||||    
T  283 catagaattctgaattacca 302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 448 - 362
Alignment:
Q  105 tatgagcaactatgttcgtttgttgtttaataaacttcacttcgaaattggaatataaagagaactgaaaaataatatgagaaacaa 191  Q
    |||||||||| ||||||| ||||    ||| ||||||||  ||||| ||||||| |||||| |||||||||||||||| ||||||||    
T  448 tatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaacaa 362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 23097 - 23147
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| | |||||||||||||| ||| ||||||||||||||||||    
T  23097 cttttatggtatgtttaaccagtgccccaaggacaccggttagcaagaccc 23147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53738 - 53685
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||||    
T  53738 tcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccc 53685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 6162 - 6110
Alignment:
Q  2 cccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||||| | |||||| |||||||| ||||||||||||||| |||||    
T  6162 cccttttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccc 6110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 961 - 1011
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccc 54  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||| ||||||    
T  961 cttttatggtatgcttaaccagtgccctaaggacaccggttagccagaccc 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10843 - 10897
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||| ||||||||| |||||||||||||| || ||||| ||||||||| ||||||    
T  10843 tcccatttatggtatgcttaaccagtgcctcgggggcagcggttagcaggaccca 10897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15029 - 15083
Alignment:
Q  1 tcccttttatggtacgcttaaccagtgccccgagggcaccggttagcaagaccca 55  Q
    |||||||||||||| |||||||||||||||||  ||||| ||||| || ||||||    
T  15029 tcccttttatggtatgcttaaccagtgccccggaggcactggttaacaggaccca 15083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 53407 - 53358
Alignment:
Q  4 cttttatggtacgcttaaccagtgccccgagggcaccggttagcaagacc 53  Q
    ||||||||||| ||||||| |||||||||  |||||||||||||| ||||    
T  53407 cttttatggtatgcttaactagtgccccggaggcaccggttagcaggacc 53358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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