View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_3 (Length: 646)

Name: NF14649_low_3
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_3
NF14649_low_3
[»] chr5 (1 HSPs)
chr5 (1-629)||(2832968-2833591)


Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 2833591 - 2832968
Alignment:
Q  1 attaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttcgttcttcaaaatggagaagtgagaagaataggattaaagctgttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833591 attaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttcgttcttcaaaatggagaagtgagaagaataggattaaagctgttttta 2833492  T
Q  101 agcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcatatttctcagaatgaataatctaatgtattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833491 agcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcatatttctcagaatgaataatctaatgtattg 2833392  T
Q  201 gttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaatt--aagacagttgtaaataagtcattagtgctacctttat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  2833391 gttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaattaaaaaacagttgtaaataagtcattagtgctacctttat 2833292  T
Q  299 taataatagnnnnnnnnctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctatcatatttcaattttctgggaaatgaaaat 398  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  2833291 taataatagttttttttctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctatcata-------tttctgggaaatgaaaat 2833199  T
Q  399 ggattttgttaatagtgtgaattatgatgatca-nnnnnnnnnnattcttaaccgtattaggttggaaattattaaattaacataacatgattggatgag 497  Q
    |||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833198 ggattttg-taatagtgtgaattatgatgatcatatttttttttattcttaaccgtattaggttggaaattattaaattaacataacatgattggatgag 2833100  T
Q  498 aaattgtgtttggtgatgtaacttcaggtgttacaatcaggggtggatgcattggtgttgtcaatagttcctggtgacattggaagaccaacaaaaagat 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833099 aaattgtgtttggtgatgtaacttcaggtgttacaatcaggggtggatgcattggtgttgtcaatagttcctggtgacattggaagaccaacaaaaagat 2833000  T
Q  598 tagagaaagctgcggttcaagatggaaattgt 629  Q
    ||||||||||| ||||||||||||||||||||    
T  2832999 tagagaaagctacggttcaagatggaaattgt 2832968  T

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