View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_30 (Length: 357)
Name: NF14649_low_30
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 175 - 344
Target Start/End: Complemental strand, 36196442 - 36196273
Alignment:
| Q |
175 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
274 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196442 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
36196343 |
T |
|
| Q |
275 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196342 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
36196273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 36196616 - 36196475
Alignment:
| Q |
1 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196616 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgt |
36196517 |
T |
|
| Q |
101 |
taacaagtcacttttgctaaatagtatagcatattgtagctg |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196516 |
taacaagtcacttttgctaaatagtatagcatattgtagctg |
36196475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 344
Target Start/End: Complemental strand, 36209565 - 36209405
Alignment:
| Q |
175 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
274 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||| |
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| T |
36209565 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattat---------tgtacaatgtttgaaatctcaaaattttaggagat |
36209475 |
T |
|
| Q |
275 |
gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatg |
344 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
36209474 |
gttttgtcgatttttctacacagatccttggaatacaagttttataatttattagtctgtttggttgatg |
36209405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 36184179 - 36184044
Alignment:
| Q |
177 |
attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
274 |
Q |
| |
|
|||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184179 |
attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat |
36184080 |
T |
|
| Q |
275 |
gttttgtcgatttttctacacagatccttgcaatac |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |
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| T |
36184079 |
gttttgtctatttttctacacagatccttggaatac |
36184044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 36209740 - 36209598
Alignment:
| Q |
1 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||| ||| ||| | |||| |||||||||||||||||||| ||||||| |||||| |
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| T |
36209740 |
tcttgcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgt |
36209641 |
T |
|
| Q |
101 |
taacaagtcact-tttgctaaatagtatagcatattgtagctg |
142 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||||||| |
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| T |
36209640 |
taacaagtcattgtttgctaaatagtataacatattgtagctg |
36209598 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36184355 - 36184218
Alignment:
| Q |
1 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgt |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||| |||||| | ||| |||| |||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
36184355 |
tcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgt |
36184256 |
T |
|
| Q |
101 |
taacaagtcacttttgctaaatagtatagcatattgta |
138 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
36184255 |
taacatgtcacttttgctaaatagtataacatattgta |
36184218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
| Q |
175 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata |
263 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
36188121 |
atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36188299 - 36188158
Alignment:
| Q |
1 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttc--- |
97 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |||||| |||||| ||| |
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|
| T |
36188299 |
tcttgcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgt |
36188200 |
T |
|
| Q |
98 |
tgttaacaagtca-cttttgctaaatagtatagcatattgta |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
36188199 |
tgttaacaagtcatggtttgctaaatagtataacatattgta |
36188158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 36200526 - 36200418
Alignment:
| Q |
1 |
tcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgt |
100 |
Q |
| |
|
||||||| || |||| | |||||||| |||| ||| ||||||||||||||| ||||||| ||||| ||||||||| |||||| |||||| |||||| |
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|
| T |
36200526 |
tcttgcattattttcctatgtggttcagaaaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgt |
36200427 |
T |
|
| Q |
101 |
taacaagtc |
109 |
Q |
| |
|
||||||||| |
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|
| T |
36200426 |
taacaagtc |
36200418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 36185568 - 36185468
Alignment:
| Q |
192 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttct |
291 |
Q |
| |
|
||||||||| ||| |||| |||| ||||| | |||||||| ||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| |
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|
| T |
36185568 |
aaggctatgtttttacctcataactaattatgtaattgtactagcttttgcactatgtttgcaaagtcaatattttaggggaggttttgttgatttttct |
36185469 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
|
| |
|
|
| T |
36185468 |
a |
36185468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
| Q |
190 |
gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
252 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
36201811 |
gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg |
36201749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 36203209 - 36203113
Alignment:
| Q |
192 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttt |
288 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||| | ||||||||||||| |||| | ||||||||| || ||||||||||| ||||| |
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|
| T |
36203209 |
aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttggcgtgtcaatatttatggggatgttttgtctatttt |
36203113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
| Q |
183 |
ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg |
252 |
Q |
| |
|
|||||| | ||| ||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| |
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|
| T |
36214316 |
ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg |
36214245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 36215673 - 36215577
Alignment:
| Q |
237 |
ttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacaga-tccttgcaatacgagttttataatttagtagtct |
332 |
Q |
| |
|
|||||||||||||||| || ||||||||| | | || |||||||| |||||||| | | | |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
36215673 |
ttttgtactatgtttgggatgtcaatatttcaagggaggttttgtccatttttctgtagaaattccttggaatacaagttttataatttagtagtct |
36215577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 36208720 - 36208659
Alignment:
| Q |
276 |
ttttgtcgatttttctacacagat-ccttgcaatacgagttttataatttagtagtctgttt |
336 |
Q |
| |
|
|||||| |||||||||| ||| || |||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
36208720 |
ttttgttgatttttctatacaaattccttgctatacaagttttataatttagtggtctgttt |
36208659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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