View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_31 (Length: 350)

Name: NF14649_low_31
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_31
NF14649_low_31
[»] chr3 (9 HSPs)
chr3 (7-253)||(4842534-4842780)
chr3 (7-253)||(4868230-4868476)
chr3 (55-210)||(4826941-4827097)
chr3 (104-173)||(42676673-42676743)
chr3 (112-228)||(25299034-25299150)
chr3 (112-209)||(53766690-53766786)
chr3 (108-181)||(50941718-50941792)
chr3 (113-181)||(17517593-17517662)
chr3 (112-180)||(22288471-22288540)
[»] chr1 (8 HSPs)
chr1 (112-230)||(48872152-48872271)
chr1 (112-209)||(44957033-44957131)
chr1 (129-210)||(32047319-32047401)
chr1 (112-180)||(11624072-11624140)
chr1 (155-231)||(10110286-10110360)
chr1 (112-222)||(11700396-11700506)
chr1 (88-140)||(27585228-27585280)
chr1 (150-221)||(35956374-35956443)
[»] chr8 (5 HSPs)
chr8 (112-221)||(28459989-28460098)
chr8 (112-181)||(18808763-18808833)
chr8 (111-221)||(38167445-38167555)
chr8 (122-231)||(39644140-39644250)
chr8 (152-221)||(10160925-10160994)
[»] chr5 (8 HSPs)
chr5 (111-221)||(17977703-17977816)
chr5 (112-222)||(5393955-5394065)
chr5 (113-230)||(543992-544109)
chr5 (123-221)||(36486911-36487010)
chr5 (123-221)||(31537696-31537795)
chr5 (112-221)||(2112544-2112653)
chr5 (150-214)||(4878584-4878647)
chr5 (112-179)||(20041613-20041681)
[»] chr4 (8 HSPs)
chr4 (112-221)||(13404163-13404272)
chr4 (112-180)||(51291126-51291195)
chr4 (107-209)||(949872-949976)
chr4 (151-221)||(49979716-49979784)
chr4 (112-209)||(20580071-20580168)
chr4 (159-227)||(29899484-29899552)
chr4 (108-147)||(8607609-8607648)
chr4 (123-180)||(14964369-14964427)
[»] scaffold0262 (1 HSPs)
scaffold0262 (112-221)||(17540-17649)
[»] scaffold0036 (1 HSPs)
scaffold0036 (123-221)||(88237-88335)
[»] scaffold0009 (1 HSPs)
scaffold0009 (122-180)||(168765-168824)
[»] chr6 (1 HSPs)
chr6 (110-180)||(34185021-34185092)
[»] scaffold0062 (1 HSPs)
scaffold0062 (112-221)||(2988-3096)
[»] chr7 (6 HSPs)
chr7 (123-227)||(38974039-38974145)
chr7 (151-187)||(34534823-34534859)
chr7 (112-175)||(17302936-17303000)
chr7 (111-147)||(32724508-32724544)
chr7 (110-204)||(36821782-36821878)
chr7 (151-223)||(42265408-42265480)
[»] scaffold0717 (1 HSPs)
scaffold0717 (161-221)||(5008-5067)
[»] chr2 (1 HSPs)
chr2 (127-222)||(36379357-36379452)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 4842534 - 4842780
Alignment:
Q  7 ataatatccttatccttataattatggttcagaaaataaaaaaccccgttaagttttaggattattttaagttgataaatattaacgagtatattcagag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4842534 ataatatccttatccttataattatggttcagaaaataaaaaacctcgttaagttttaggattattttaagttgataaatattaacgagtatcttcagag 4842633  T
Q  107 cattttttaagcatctaaagtggtaagattttatgaaagttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4842634 cattttttaagcatctaaagtggtaagattttatgaaagttgagcatttattatattggaaattgaagtctttacatttcttttaaaaataattttttca 4842733  T
Q  207 ttataaatgcttaaaaggtgctccatggatattcattaacaggactc 253  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  4842734 ttataaatgcttaaaagatgctccatggacattcattaacaggactc 4842780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 4868230 - 4868476
Alignment:
Q  7 ataatatccttatccttataattatggttcagaaaataaaaaaccccgttaagttttaggattattttaagttgataaatattaacgagtatattcagag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4868230 ataatatccttatccttataattatggttcagaaaataaaaaacctcgttaagttttaggattattttaagttgataaatattaacgagtatcttcagag 4868329  T
Q  107 cattttttaagcatctaaagtggtaagattttatgaaagttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttca 206  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4868330 catttttcaaacatctaaagtggtaagattttatgaaagttgagcatttattatattggaaattgaagtctttacatttcttttaaaaataattttttca 4868429  T
Q  207 ttataaatgcttaaaaggtgctccatggatattcattaacaggactc 253  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4868430 ttataaatgcttaaaaggtgctccatggacattcattaacaggactc 4868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 4826941 - 4827097
Alignment:
Q  55 ttaagttttaggattattttaagttgataaatattaacgagtatattcagagcattttttaagcatctaaagtggtaagattttatgaaagttgaacatt 154  Q
    ||||||| ||||||| ||||||||||  |||||||||||||||| |||||| |||| ||||| |||  |||| ||||||||||||||||||||||  |||    
T  4826941 ttaagttgtaggatttttttaagttggaaaatattaacgagtatcttcagaacattctttaaacattcaaaggggtaagattttatgaaagttgaggatt 4827040  T
Q  155 tattacattggaaattgaagtctttacatttcttttaaa-aataattttttcattat 210  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||  |||||||||||    
T  4827041 tatttcattagaaattgaagtctttacatttcttttaaagaatagatttttcattat 4827097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 42676673 - 42676743
Alignment:
Q  104 gagcattttttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaa 173  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||  |||||||||||||| ||||||||    
T  42676673 gagcattttttaagcatcaaaagtggtaagtttttatgaaagtttgtgcatttattacattgaaaattgaa 42676743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 25299034 - 25299150
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    ||||| || |||||||  |||||||||||||||| |||  |||||||| ||||| |||||||| ||||||| ||| ||| || |||||||| || ||||     
T  25299034 tttaaacacctaaagtaataagattttatgaaagtttgtgcatttattgcattgaaaattgaaatctttac-tttttttaaagaataatttctttattag 25299132  T
Q  211 aaatgcttaaaaggtgct 228  Q
    |||||||||||| |||||    
T  25299133 aaatgcttaaaaagtgct 25299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 53766690 - 53766786
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcatta 209  Q
    |||||||||||||| |||||| |||||||||||| |||   ||||||| ||||| |||||||||  |||||  || ||| |||||||||||||||||||    
T  53766690 tttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaagcttttac--ttttttaaaaaataattttttcatta 53766786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 50941792 - 50941718
Alignment:
Q  108 attttttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttac 181  Q
    |||||||||  | ||| ||||||||||||||||||||| |||  |||||||| |||||||||||||||| |||||    
T  50941792 attttttaaagacctacagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtttttac 50941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 17517662 - 17517593
Alignment:
Q  113 ttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttac 181  Q
    ||||||| | |||||||||||||| |||||||| |||  |||||||| ||||||||||| |||| |||||    
T  17517662 ttaagcacccaaagtggtaagattgtatgaaagtttgtgcatttattgcattggaaattaaagtttttac 17517593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 22288471 - 22288540
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtcttta 180  Q
    |||||| ||| ||| ||||||||||||||||||| |||  ||||||||| |||| |||||||| ||||||    
T  22288471 tttaagtatccaaaatggtaagattttatgaaagtttgtgcatttattatattgaaaattgaaatcttta 22288540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 48872271 - 48872152
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttgaa-catttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    |||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||  ||| | | ||||||||||| || ||||     
T  48872271 tttaagcatcaaaagtggtaagattttatgaaagtttatgcatttattacattggaaattgaagtctttaattttttgtgaaaaataatttatttattag 48872172  T
Q  211 aaatgcttaaaaggtgctcc 230  Q
    ||||| |||||  |||||||    
T  48872171 aaatgtttaaatagtgctcc 48872152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 44957033 - 44957131
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttga-acatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcatta 209  Q
    ||||||||||||||||||||||||||||||||| || | ||| |||||  |||| ||||||||||| |||  ||| |||| | |||||||| |||||||    
T  44957033 tttaagcatctaaagtggtaagattttatgaaaatttatacaattattgtattgaaaattgaagtcgttaattttatttttataataatttcttcatta 44957131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 32047319 - 32047401
Alignment:
Q  129 gtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    ||||||||||||||||| |||  |||||||| ||||| ||||| || |||||| |||| ||| || |||||||| ||||||||    
T  32047319 gtaagattttatgaaagattgtccatttattgcattgaaaattaaaatctttaaatttttttaaagaataatttattcattat 32047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 11624072 - 11624140
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtcttta 180  Q
    |||||||| | ||||||||||||||||||||||| |||  |||||||| |||||| ||||||||| ||||    
T  11624072 tttaagcaccaaaagtggtaagattttatgaaagtttgtgcatttattgcattgg-aattgaagttttta 11624140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 10110286 - 10110360
Alignment:
Q  155 tattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaaaggtgctcca 231  Q
    |||||||||| ||||||||||  ||| |||| ||||||||||||| |||| |||| ||||| |||||| ||||||||    
T  10110286 tattacattgaaaattgaagttctta-attt-ttttaaaaataatattttaattagaaatggttaaaaagtgctcca 10110360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 11700506 - 11700396
Alignment:
Q  112 tttaagcatctaaagtggtaa-gattttatgaaagtt-gaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcatta 209  Q
    |||||||| ||||||| |||| | ||||||||||||| |  |||||||| |||||||||||||||||| ||| ||| ||  || ||||| ||||||||||    
T  11700506 tttaagcacctaaagtagtaaagtttttatgaaagtttgtgcatttattgcattggaaattgaagtctatac-ttttttaaaagaataa-tttttcatta 11700409  T
Q  210 taaatgcttaaaa 222  Q
      |||||||||||    
T  11700408 agaatgcttaaaa 11700396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 27585228 - 27585280
Alignment:
Q  88 ttaacgagtatattcagagcattttttaagcatctaaagtggtaagattttat 140  Q
    ||||||||| | | ||||||| | |||||||||| ||||||||||||||||||    
T  27585228 ttaacgagtgtctccagagcactctttaagcatccaaagtggtaagattttat 27585280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 35956374 - 35956443
Alignment:
Q  150 acatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    ||||||||| |||| ||||||||||| |||||  || ||||||||||||||| || |||| ||||| |||||    
T  35956374 acatttattgcattagaaattgaagtttttac--tttttttaaaaataatttctttattaaaaatgtttaaa 35956443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 28459989 - 28460098
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    |||||||||| |||||||||||||||||| |||| |||  |||||||| ||||||||||||||||||||| |||  ||| |||||||||||||| ||||     
T  28459989 tttaagcatcaaaagtggtaagattttattaaagtttgtgcatttattgcattggaaattgaagtcttta-attattttaaaaaataatttttttattag 28460087  T
Q  211 aaatgcttaaa 221  Q
     ||||||||||    
T  28460088 gaatgcttaaa 28460098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 18808763 - 18808833
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttga-acatttattacattggaaattgaagtctttac 181  Q
    |||||||| ||||| ||||||||||||||||||||| |  |||||||| |||| |||||||||||||||||    
T  18808763 tttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaagtctttac 18808833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 38167555 - 38167445
Alignment:
Q  111 ttttaagcatctaaagtggtaagattttatgaaagt-tgaacatttattacattggaaattgaagtctttacatttcttttaaa-aataattttttcatt 208  Q
    |||||||||| |||||||||||| |||||||||||| ||  ||||||||  ||||||||||||||| |||  |||| ||||||| |||||||| |||||     
T  38167555 ttttaagcatataaagtggtaagcttttatgaaagtctgtgcatttattgtattggaaattgaagttttt--attttttttaaagaataatttcttcata 38167458  T
Q  209 ataaatgcttaaa 221  Q
    |  ||||||||||    
T  38167457 agtaatgcttaaa 38167445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 39644140 - 39644250
Alignment:
Q  122 taaagtggtaagattttatgaaagtt-gaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaa 220  Q
    ||||||||||| ||||||| |||||| | |||| ||||  ||||||||||| ||||||||| ||| ||  || |||||||||||  |||  |||||||||    
T  39644140 taaagtggtaatattttataaaagtttgtacatctattgtattggaaattgtagtctttactttttttaaaagaataattttttagttaagaatgcttaa 39644239  T
Q  221 aaggtgctcca 231  Q
    |  ||||||||    
T  39644240 agagtgctcca 39644250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 10160925 - 10160994
Alignment:
Q  152 atttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    |||||||| ||||||||||||| |||| || ||| ||||||| ||||||| ||| ||| ||||| |||||    
T  10160925 atttattatattggaaattgaattcttcactttttttttaaagataatttcttctttaaaaatgtttaaa 10160994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 17977703 - 17977816
Alignment:
Q  111 ttttaagcatctaaagtggtaagattttatgaaagttga-acatttattacattggaaattgaagtctttaca--tttcttttaaaaataattttttcat 207  Q
    ||||||||||| |||||||||||||||| |||||||| |  |||||||| |||||||||||| ||| || |||  ||| ||| || |||||||| |||||    
T  17977703 ttttaagcatccaaagtggtaagattttctgaaagtttatgcatttattgcattggaaattgtagtattcacacttttatttaaagaataatttcttcat 17977802  T
Q  208 tataaatgcttaaa 221  Q
    ||| ||||||||||    
T  17977803 tatgaatgcttaaa 17977816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 5394065 - 5393955
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    ||||||||||||| || ||||||||||||||||| |||  ||||| ||  || |||||||||| | |||| |||| ||| || ||||||||||||||||     
T  5394065 tttaagcatctaaggtagtaagattttatgaaagtttgtgcatttcttgtataggaaattgaaattttta-atttttttaaagaataattttttcattac 5393967  T
Q  211 aaatgcttaaaa 222  Q
     |||||||||||    
T  5393966 gaatgcttaaaa 5393955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 544109 - 543992
Alignment:
Q  113 ttaagcatctaaagtggtaagattttatgaaagt-tgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattata 211  Q
    ||||||| ||||||| |||||||||||| ||||| ||  |||||||| | |||||||||||||| ||||| ||| ||| || ||||||||  || ||| |    
T  544109 ttaagcacctaaagtagtaagattttataaaagtgtgtgcatttattgcgttggaaattgaagt-tttacttttttttaaagaataatttcctcgttaga 544011  T
Q  212 aatgcttaaaaggtgctcc 230  Q
    ||||||||||  |||||||    
T  544010 aatgcttaaagagtgctcc 543992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 36487010 - 36486911
Alignment:
Q  123 aaagtggtaagattttatgaaagtt--gaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaa 220  Q
    ||||||||||||||||| |||||||  | ||||||||| ||||| ||||||||||||| | | || ||| || |||||||| || |||| ||||||||||    
T  36487010 aaagtggtaagattttacgaaagttttgtacatttattgcattgaaaattgaagtcttga-acttttttaaagaataatttctttattaaaaatgcttaa 36486912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 31537795 - 31537696
Alignment:
Q  123 aaagtggtaagattttatgaaagtt-gaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    |||||| ||| |||||||||||||| |  ||| |||| |||| ||||||||||||||||  ||| ||| || ||||||||| |||||| ||||| |||||    
T  31537795 aaagtgataaaattttatgaaagtttgtgcatatattgcattagaaattgaagtctttatgtttttttaaagaataattttctcattaaaaatgtttaaa 31537696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 2112653 - 2112544
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaa-gttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    |||||||||||||||| |||||||||||| |||  |||  |||||||| ||||||||||||| || ||||| |||  |||  ||||||||| || || ||    
T  2112653 tttaagcatctaaagtagtaagattttataaaattttgtgcatttattgcattggaaattgatgt-tttactttttctttttaaataatttctttatgat 2112555  T
Q  211 aaatgcttaaa 221  Q
     ||||||||||    
T  2112554 gaatgcttaaa 2112544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 4878584 - 4878647
Alignment:
Q  150 acatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaat 214  Q
    |||||||||| |||| ||||||||||||||| |||| ||| || ||||||||||| |||| ||||    
T  4878584 acatttattatattgaaaattgaagtcttta-atttttttaaagaataatttttttattaaaaat 4878647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 20041613 - 20041681
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttgaa-catttattacattggaaattgaagtcttt 179  Q
    |||||||||||||| || ||| |||||| |||| || |  |||||||| ||||||||||||||||||||    
T  20041613 tttaagcatctaaaatgataaaattttacgaaaatttatgcatttattgcattggaaattgaagtcttt 20041681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 13404272 - 13404163
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttga-acatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    |||||||| ||||||||||||||||||||||||||| |   ||||||||| ||||||||||||||| |||  ||| |   ||||||||||| ||||||||    
T  13404272 tttaagcacctaaagtggtaagattttatgaaagtttatgtatttattacgttggaaattgaagtc-ttagctttttaaaaaaaataatttcttcattat 13404174  T
Q  211 aaatgcttaaa 221  Q
     ||||||||||    
T  13404173 gaatgcttaaa 13404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 51291195 - 51291126
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtcttta 180  Q
    |||||||| ||||| ||||||||||||||||||| |||  |||||||| |||||||||||||||||||||    
T  51291195 tttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtcttta 51291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 949872 - 949976
Alignment:
Q  107 cattttttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaa-aataatttttt 204  Q
    |||| |||||||||| ||| ||||||| ||||||||||| |||  |||||||| ||||| |||||||||||||||  ||| ||||||| |||||||| ||    
T  949872 cattctttaagcatccaaaatggtaaggttttatgaaagtttgtgcatttattgcattgaaaattgaagtctttaatttttttttaaagaataatttctt 949971  T
Q  205 catta 209  Q
    |||||    
T  949972 catta 949976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 49979784 - 49979716
Alignment:
Q  151 catttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    ||||||||  |||||||||||||||||||| ||||  || || ||||||||||||||||| ||||||||||    
T  49979784 catttattgtattggaaattgaagtctttaaattt--ttaaagaataattttttcattatgaatgcttaaa 49979716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 20580071 - 20580168
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagttgaac-atttattacattggaaattgaagtctttacatttcttttaaaaataattttttcatta 209  Q
    |||||||||| ||| | |||| |||||||||||||| |   |||||||| ||||||||||||||||||||| ||| ||| || |||||||| |||||||    
T  20580071 tttaagcatccaaaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttac-tttttttaaataataatttcttcatta 20580168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 29899552 - 29899484
Alignment:
Q  159 acattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaaaggtgc 227  Q
    |||||| |||||||||||||| | ||| ||| || |||||||| |||||||| ||||||||||| ||||    
T  29899552 acattgcaaattgaagtctttgcttttttttaaagaataatttattcattatgaatgcttaaaaagtgc 29899484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 8607609 - 8607648
Alignment:
Q  108 attttttaagcatctaaagtggtaagattttatgaaagtt 147  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  8607609 attttttaagcaccaaaagtggtaagattttatgaaagtt 8607648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 14964427 - 14964369
Alignment:
Q  123 aaagtggtaagattttatgaaagtt-gaacatttattacattggaaattgaagtcttta 180  Q
    ||||| || |||||||||||||||| |  |||||||||||||| |||||||||||||||    
T  14964427 aaagtagtcagattttatgaaagtttgtgcatttattacattgaaaattgaagtcttta 14964369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 17649 - 17540
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaa-gttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    ||||| |||| ||||| ||||||||||||||||  ||| ||||||||||||||| ||||| |||| |||| |||| ||| || |||||||| || ||||     
T  17649 tttaaacatcaaaagtagtaagattttatgaaattttgtacatttattacattgaaaattaaagttttta-atttatttaaagaataatttatttattaa 17551  T
Q  211 aaatgcttaaa 221  Q
    |||||||||||    
T  17550 aaatgcttaaa 17540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 88335 - 88237
Alignment:
Q  123 aaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    |||||||||| |||||||||||| |||  ||||||||| |||||||||| |||| ||||  ||| |||||| |||||||| |||||||  ||||||||||    
T  88335 aaagtggtaatattttatgaaagtttgtgcatttattatattggaaattaaagttttta-tttttttttaagaataatttcttcattaggaatgcttaaa 88237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 168765 - 168824
Alignment:
Q  122 taaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtcttta 180  Q
    |||||||||||||||||||||||| |||  ||||||||| |||||||||| |||||||||    
T  168765 taaagtggtaagattttatgaaagtttgtgcatttattatattggaaattaaagtcttta 168824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 34185021 - 34185092
Alignment:
Q  110 tttttaagcatctaaagtggtaagattttatgaaagtt-gaacatttattacattggaaattgaagtcttta 180  Q
    |||||||||| |||||  |||||||||| ||||||||| |  |||||||| |||||||||||||||||||||    
T  34185021 tttttaagcacctaaatgggtaagatttaatgaaagtttgtgcatttattgcattggaaattgaagtcttta 34185092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 3096 - 2988
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattat 210  Q
    |||||||| | ||||| ||||||||||||||||| |||  |||||||| || ||||||||||||| ||||| ||| ||| || |||||||| || ||||     
T  3096 tttaagcacccaaagtagtaagattttatgaaagtttgtgcatttattgcagtggaaattgaagt-tttac-tttttttaaagaataatttctttattag 2999  T
Q  211 aaatgcttaaa 221  Q
    |||||||||||    
T  2998 aaatgcttaaa 2988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 38974039 - 38974145
Alignment:
Q  123 aaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaag-tctttacatttcttttaaaaataattttttcattataaatgcttaa 220  Q
    ||||||||||| ||||||||||| |||  |||||||| ||||||||||||||| | |||||  || ||  ||||||||||| ||||| | ||||||||||    
T  38974039 aaagtggtaagcttttatgaaagtttgtgcatttattgcattggaaattgaagttttttactatttttaaaaaaataatttcttcataagaaatgcttaa 38974138  T
Q  221 aaggtgc 227  Q
    || ||||    
T  38974139 aaagtgc 38974145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 34534823 - 34534859
Alignment:
Q  151 catttattacattggaaattgaagtctttacatttct 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34534823 catttattgcattggaaattgaagtctttacatttct 34534859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 17303000 - 17302936
Alignment:
Q  112 tttaagcatctaaagtggtaagattttatgaaagtt-gaacatttattacattggaaattgaagt 175  Q
    |||||||| |||||||||||| ||| | |||||||| |  |||||||| ||||||||||||||||    
T  17303000 tttaagcacctaaagtggtaatattctgtgaaagtttgtgcatttattgcattggaaattgaagt 17302936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 32724544 - 32724508
Alignment:
Q  111 ttttaagcatctaaagtggtaagattttatgaaagtt 147  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  32724544 ttttaagcatcaaaagtagtaagattttatgaaagtt 32724508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 36821782 - 36821878
Alignment:
Q  110 tttttaagcatctaaagtggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaa-aataatttttt 204  Q
    |||||||||| | |||||||||| |||||||||||| |||   |||||||  ||| ||||||| ||| ||||| ||| ||||||| |||||||||||    
T  36821782 tttttaagcaccaaaagtggtaacattttatgaaagtttgcgtatttattgtattagaaattgtagtatttactttttttttaaagaataatttttt 36821878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 42265480 - 42265408
Alignment:
Q  151 catttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaaag 223  Q
    |||||||| ||||| |||||||||| ||||| ||| ||| || |||||||| ||||| |  ||||||||||||    
T  42265480 catttattgcattgtaaattgaagtttttacttttttttaaagaataatttcttcataaggaatgcttaaaag 42265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 5008 - 5067
Alignment:
Q  161 attggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaa 221  Q
    ||||||||||||||||||||| ||| ||| || |||||||| |||||||  ||||||||||    
T  5008 attggaaattgaagtctttac-tttttttaaagaataatttcttcattaggaatgcttaaa 5067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 36379452 - 36379357
Alignment:
Q  127 tggtaagattttatgaaag-ttgaacatttattacattggaaattgaagtctttacatttcttttaaaaataattttttcattataaatgcttaaaa 222  Q
    ||||||||||||||||||| |||  |||||||||||||| ||||||| || ||||  | | |||| ||| ||| |||||||||| ||||| ||||||    
T  36379452 tggtaagattttatgaaagtttgttcatttattacattgaaaattgatgtttttatttctttttttaaattaa-tttttcattagaaatgtttaaaa 36379357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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