View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_35 (Length: 323)
Name: NF14649_low_35
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 49686094 - 49686387
Alignment:
| Q |
17 |
cagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
116 |
Q |
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| T |
49686094 |
cagagaatttagcaaaaattgggtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
49686193 |
T |
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| Q |
117 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
216 |
Q |
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| T |
49686194 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
49686293 |
T |
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| Q |
217 |
ggctctagttcatgcactacatcttttgttctctcatttgactgtgttaccgctacttgtcttaactagtaaaggaaatggacacagtgatgat |
310 |
Q |
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| T |
49686294 |
ggctctagttcatgcactacatcttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgat |
49686387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 93 - 310
Target Start/End: Original strand, 49690421 - 49690647
Alignment:
| Q |
93 |
acaaattcacatgacttgtgtagta---attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgt |
189 |
Q |
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| T |
49690421 |
acaaatttacaagacttgtgtggtactcattttccaagtcaacta--gcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaa-aagtgt |
49690517 |
T |
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| Q |
190 |
ggaacaaattgtgaaacagaataggatggctctagttcatgcactacat---------cttttgttctctcatttgactgtgttaccgctacttgtctta |
280 |
Q |
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| T |
49690518 |
ggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtctta |
49690617 |
T |
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| Q |
281 |
actagtaaaggaaatggacacagtgatgat |
310 |
Q |
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| T |
49690618 |
actaggaaaggaaatggacacagtggtgat |
49690647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 49678948 - 49679020
Alignment:
| Q |
238 |
tcttttgttctctcatttgactgtgttaccgctacttgtcttaactagtaaaggaaatggacacagtgatgat |
310 |
Q |
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| T |
49678948 |
tcttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgat |
49679020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 49690330 - 49690378
Alignment:
| Q |
15 |
agcagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatg |
63 |
Q |
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| T |
49690330 |
agcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatg |
49690378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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