View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_38 (Length: 306)
Name: NF14649_low_38
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 23310284 - 23310578
Alignment:
| Q |
12 |
caagaaaataaagctgaacataaaatttcggatttgaaacataccggtcaggctaagcatacaagaacacaaagaagtatagaatatttgattatgtatt |
111 |
Q |
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| T |
23310284 |
caagaaaataaagctgaacataaaatttcggatttgaaacgtaccggtcaggctaagcatacaagaacacaaagaagtatagaatatttgattatgtatt |
23310383 |
T |
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| Q |
112 |
tccatgtcatagcctttaaacaacttatcttgaaatgtgcttgtaaagccatcaaacctattgcacaaaaaacttgggatcatattcacattcaagaaaa |
211 |
Q |
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| T |
23310384 |
tccatgtcatagcctttaaacaacttatcttgaaatgtgcttgtaaagccatcaaacctattgcacaaaaaacttgggatcatattcacattcaagaaaa |
23310483 |
T |
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| Q |
212 |
gactaccacatgaattgttttctataacaaattagattctagcaactggcaaaggcataaaactaataataccagttgttaataataaacttgtg |
306 |
Q |
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| T |
23310484 |
gactaccacatgaattgttttctataacaaattagattctagcaactggcaaaggcataaaactaataataccagttgttaataataaacttgtg |
23310578 |
T |
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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 41140740 - 41140852
Alignment:
| Q |
58 |
gtcaggctaagcatacaagaacacaaagaagtatagaatatttgattatgtatttccatgtcatagcctttaaacaacttatcttgaaatgtgcttgtaa |
157 |
Q |
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|||| |||||| | ||||||||||| | ||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
41140740 |
gtcaagctaagaagacaagaacacagtgttgtataaaatatctgattatgtatctccatgtcatagcctctaaacatcttatcttggaatgtgcttgtaa |
41140839 |
T |
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| Q |
158 |
agccatcaaacct |
170 |
Q |
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| T |
41140840 |
agccatcaaacct |
41140852 |
T |
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