View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14649_low_4 (Length: 607)
Name: NF14649_low_4
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 36652264 - 36651658
Alignment:
| Q |
1 |
taagtcttggttaataccagaaagagggcagtgatagactcattggcccaacgactatcttccagaagatggccaatgatgatgcaagcgcaaaggagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36652264 |
taagtcttggttaataccagaaagagggcagtgatagactcattggcccaacgactatcttccagaagatggccaatgatgatgcaagcgcaaaggagtg |
36652165 |
T |
|
| Q |
101 |
caaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaagttgaaaaatgaagtggtgagggtaacacaaccatcttgactca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36652164 |
cgaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaagttgaaaaatgaagtggtgagggtaacacaaccatcttgactca |
36652065 |
T |
|
| Q |
201 |
ctcaagttgagaatgactaactgaatgggtgagttccttttgattctcaatagttattaaataaaaaggaaacgtgtggtttttgaatgacaaatatgtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36652064 |
ctcaagttgagaatgactaactgaatgagtgagttccttttgatcctcaatagttattaaataaaaaggaaatgtgtggtttttgaatgacaaatatgtc |
36651965 |
T |
|
| Q |
301 |
gggcgttattaacaactttggtttggttggnnnnnnncatatcaactaaaataactactctttcaggcatgtttatgatttggtacaaatgatatgtcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36651964 |
gggcgttattaacaactttggtttggttggttttttttatatcaactaaaataactactctttcaggcatgtttatgatttagtacaaatgatatgtcat |
36651865 |
T |
|
| Q |
401 |
ggaaacatgtattgttgtttcttttatagcagacattgacagatattgttgaccttaagaaccaactactagtcattgttttttgtgttgaaatattaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36651864 |
ggaaacatgtattgttgtttcttttatagcagacattgacagatattgttgaccttaagaaccaactactagtcattgttttttgtgttgaagtattaag |
36651765 |
T |
|
| Q |
501 |
agtaaccttcaaatggtataaactaacttggtatttgtatctcttttttgtagtgctgaatctaacccccggaagctgtgctgaaacatggtattaattg |
600 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36651764 |
agtaaccttcagatggtataaactaacttggtatttgtatctcttttttgtagtactgaatctaacccccggaagctgtgctgaaacatggtattaattg |
36651665 |
T |
|
| Q |
601 |
agccatc |
607 |
Q |
| |
|
||||||| |
|
|
| T |
36651664 |
agccatc |
36651658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 36647110 - 36646993
Alignment:
| Q |
58 |
tcttccagaagatggccaatgatgatgcaagcgcaaaggagtgcaaagaatacacagagcgcaacaatggtgcttgcggttgcgctgctcagaaatgaag |
157 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| |||||| |
|
|
| T |
36647110 |
tcttcgagaaggtggccaacgatgatgcaagcgcagaggagtgcgaagaatacacaaagtgaaacaatggtgcttg---------tgctcagatatgaag |
36647020 |
T |
|
| Q |
158 |
ttgaaaaatgaagtggtgagggtaaca |
184 |
Q |
| |
|
||||| ||| ||||||||||||||||| |
|
|
| T |
36647019 |
ttgaagaatcaagtggtgagggtaaca |
36646993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University