View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_45 (Length: 267)
Name: NF14649_low_45
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 36651659 - 36651412
Alignment:
| Q |
1 |
tccattgtagatgtatttccattgtaatatttaagtctaatgattaaagtataccactatctcccccaagcttttttaactattctaatactagtatgct |
100 |
Q |
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| T |
36651659 |
tccattgtagatgtatttccattgtaatatttaagtctaatgattaaagtataccactatctcccccaagcttttttaactattctaatactagtatgct |
36651560 |
T |
|
| Q |
101 |
attatactttttggtctctatatttggtttctgtgaacttttaaaacttgaatttttaggcttaattacactaattcttagctagaatccttaacagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36651559 |
attatactttttggtctctatatttggtttctgtgaacttttaaaacttgaatttttaggcttaattacactaattcttagctagaatccttaacagtga |
36651460 |
T |
|
| Q |
201 |
aaaagaaagtgaagtttagcctgtgattatgtttttgcactctcagcc |
248 |
Q |
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| T |
36651459 |
aaaagaaagtgaagtttagcctgtgattatgtttttgcactctcagcc |
36651412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 3097848 - 3097928
Alignment:
| Q |
99 |
ctattatactttttggtctctatatttggtttctgtgaacttttaaaacttgaatttttaggcttaattacactaattctta |
180 |
Q |
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| T |
3097848 |
ctattatagtttttggtctctatattt-gtttttgtgagctattaacacttgattttttaagcttaattgcactagttctta |
3097928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 36868405 - 36868470
Alignment:
| Q |
148 |
ttgaatttttaggcttaattacactaattcttagctagaatccttaacagtgaaaaagaaagtgaa |
213 |
Q |
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| T |
36868405 |
ttgattttttaggcctaattacactaattcttaactagaatccttaacaatgaataagaaagtgaa |
36868470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 8686396 - 8686512
Alignment:
| Q |
72 |
ttttttaactattctaatactagtatgctattatactttttggtctctatatttggtttctgtgaacttttaaa-acttgaatttttaggcttaattaca |
170 |
Q |
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|||||||| | |||| |||||| |||| |||||||||||||| |||| ||||||| || ||||||||| |||| || | || ||||||||||||||||| |
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| T |
8686396 |
ttttttaatttttctcatactattatgttattatactttttg-tctccatatttgtattatgtgaacttctaaacacctaaaattttaggcttaattaca |
8686494 |
T |
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| Q |
171 |
ctaattcttagctagaat |
188 |
Q |
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| T |
8686495 |
cctattcttaactagaat |
8686512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 30632931 - 30632818
Alignment:
| Q |
108 |
tttttggtctctatatttggtttctgtgaacttttaaaacttgaatttttaggcttaattacactaattcttagc----tagaatccttaacagtgaaaa |
203 |
Q |
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||||| |||||| | |||| ||| |||||||| | || ||||||| ||||||||||||||| ||||||| ||| | || |||||||||||| |||| |
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| T |
30632931 |
ttttttgtctctctgtttgttttttgtgaactataaacacttgaacttttaggcttaattatactaattattaactatatataatccttaacaggaaaaa |
30632832 |
T |
|
| Q |
204 |
agaaagtgaagttt |
217 |
Q |
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|||||| ||||||| |
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| T |
30632831 |
agaaagcgaagttt |
30632818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 18183784 - 18183728
Alignment:
| Q |
161 |
cttaattacactaattcttagctagaatccttaacagtgaaaaagaaagtgaagttt |
217 |
Q |
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||||||| |||||| |||| | ||||||||||||| ||||||||||||||| |||| |
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| T |
18183784 |
cttaattgtactaatccttaacgagaatccttaacaatgaaaaagaaagtgaggttt |
18183728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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