View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_47 (Length: 260)

Name: NF14649_low_47
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_47
NF14649_low_47
[»] chr3 (22 HSPs)
chr3 (1-248)||(28140333-28140579)
chr3 (32-222)||(27905415-27905603)
chr3 (1-116)||(28126665-28126780)
chr3 (40-154)||(28475303-28475415)
chr3 (7-134)||(28126952-28127077)
chr3 (32-134)||(28516405-28516505)
chr3 (7-134)||(28140885-28141008)
chr3 (40-200)||(17752404-17752556)
chr3 (40-200)||(19053724-19053876)
chr3 (98-154)||(28501099-28501155)
chr3 (89-154)||(8540835-8540900)
chr3 (147-222)||(27995393-27995470)
chr3 (177-222)||(28501052-28501097)
chr3 (162-222)||(28076361-28076422)
chr3 (95-154)||(28476050-28476109)
chr3 (32-109)||(27995301-27995372)
chr3 (89-125)||(8542915-8542951)
chr3 (70-106)||(28504146-28504182)
chr3 (80-127)||(28076300-28076347)
chr3 (117-154)||(8542572-8542609)
chr3 (173-201)||(28155924-28155952)
chr3 (173-201)||(28174969-28174997)
[»] chr4 (1 HSPs)
chr4 (162-222)||(9392813-9392874)
[»] chr7 (1 HSPs)
chr7 (168-196)||(8697411-8697439)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 28140333 - 28140579
Alignment:
Q  1 cctcctaagtatatttctacagcagagttgctcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140333 cctccaaagtatatttctacagcagagttgctcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaac 28140432  T
Q  101 aattttcagtccatattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140433 aattttcagtcgatattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 28140532  T
Q  201 tctattatcttttagacaaacctctaaaacaaaactctaacacttata 248  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  28140533 tctattatcttttagacaaa-ctctaaaacaaaactctaacacttata 28140579  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 27905415 - 27905603
Alignment:
Q  32 tcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcagtccatattttaattaattgttt 131  Q
    ||||| |||||||||||||||||||||||  ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27905415 tcatatggcttgaacatttgctgaaagtg--ctggagacaaggtaaccaacaaacaatcatactttaacaattttcagtccatattttaattaattgttt 27905512  T
Q  132 acagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctttctattatcttttagacaaacc 222  Q
    ||||||||||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27905513 acagtgaccaagttctagattttttaagagtattacaagggtttataaatcaacttgagttttatgctttgtattatcttttagacaaacc 27905603  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28126665 - 28126780
Alignment:
Q  1 cctcctaagtatatttctacagcagagttgctcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaac 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  28126665 cctcctatgtatatttctacagcagagttgctcagacggcttgaacatttgctgaaagtgtgctggagttatggtaaccaacaaacaatcatgttttaac 28126764  T
Q  101 aattttcagtccatat 116  Q
    ||||||||||| ||||    
T  28126765 aattttcagtcgatat 28126780  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 28475415 - 28475303
Alignment:
Q  40 cttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcagtccatattttaattaattgtttacagtgac 139  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||    
T  28475415 cttgaacatttgctgaaagtg--ctggagataaggtaaccaacaaacaatcatactttaacaattttcagtcgatactttaattaattgtttacagtgac 28475318  T
Q  140 caagttctagatttc 154  Q
    |||||||||||||||    
T  28475317 caagttctagatttc 28475303  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 28126952 - 28127077
Alignment:
Q  7 aagtatatttctacagcagagttgctcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaatttt 106  Q
    ||||||||||||||||||||||| |    |  ||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||    
T  28126952 aagtatatttctacagcagagtttcaatgaacgcttgaacatttgctgaaagtg--ctggagataaggtaaccaacaaacaatcatactttaacaatttt 28127049  T
Q  107 cagtccatattttaattaattgtttaca 134  Q
    ||||| ||||||||||||||||||||||    
T  28127050 cagtcaatattttaattaattgtttaca 28127077  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 28516505 - 28516405
Alignment:
Q  32 tcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcagtccatattttaattaattgttt 131  Q
    ||||||||||||||||||||||| |||||  || ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  28516505 tcatacggcttgaacatttgctggaagtg--ctagagataaggtaaccaacaaacaatcatactttaacgattttcagtccatattttaattaattgttt 28516408  T
Q  132 aca 134  Q
    |||    
T  28516407 aca 28516405  T

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Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 28140885 - 28141008
Alignment:
Q  7 aagtatatttctacagcagagttgctcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaatttt 106  Q
    ||||||||||||||||||||||| |    |  ||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||    
T  28140885 aagtatatttctacagcagagtttcaatgaacgcttgaacatttgctgaaagtg--ctggagataaggtaaccaacaaacaatcatactttaacaatttt 28140982  T
Q  107 cagtccatattttaattaattgtttaca 134  Q
    |||||  |||||||||||||||||||||    
T  28140983 cagtc--tattttaattaattgtttaca 28141008  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 17752556 - 17752404
Alignment:
Q  40 cttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcagtccatattttaattaattgtttacagtgac 139  Q
    |||||||||||||||||||||  |||||  |||||||||    |||||||||| |||||||| ||| || |  ||||||||||| | ||||||||| |||    
T  17752556 cttgaacatttgctgaaagtg--ctggaaataaggtaac----aaacaatcatactttaacacttt-cattggatattttaatttactgtttacagggac 17752464  T
Q  140 caagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 200  Q
     ||||| ||| |||| |  || |||||||||||||||||||||||||||||||||||||||    
T  17752463 -aagttttaggtttctttagagtattacaagggtttataaatcaacttgagttttatgctt 17752404  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 19053876 - 19053724
Alignment:
Q  40 cttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcagtccatattttaattaattgtttacagtgac 139  Q
    |||||||||||||||||||||  |||||  |||||||||    |||||||||| |||||||| ||| || |  ||||||||||| | ||||||||| |||    
T  19053876 cttgaacatttgctgaaagtg--ctggaaataaggtaac----aaacaatcatactttaacacttt-cattggatattttaatttactgtttacagggac 19053784  T
Q  140 caagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 200  Q
     ||||| ||| |||| |  || |||||||||||||||||||||||||||||||||||||||    
T  19053783 -aagttttaggtttctttagagtattacaagggtttataaatcaacttgagttttatgctt 19053724  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 28501155 - 28501099
Alignment:
Q  98 aacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 154  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  28501155 aacaattttcagtcaatattttaattaattgtttacagtgaccaagttgtagatttc 28501099  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 8540900 - 8540835
Alignment:
Q  89 tcatgctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 154  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||    
T  8540900 tcatactttaacaattttcagtcgatattttaattaattgtttacagggaccaagttttatatttc 8540835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 27995393 - 27995470
Alignment:
Q  147 tagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt--tctattatcttttagacaaacc 222  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||||  | |||||||||||||| |||||    
T  27995393 tagatttcttaagagtattacaagggtttgtaaatcaacttgagttttatgctttgtatattatcttttagagaaacc 27995470  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 28501097 - 28501052
Alignment:
Q  177 taaatcaacttgagttttatgctttctattatcttttagacaaacc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28501097 taaatcaacttgagttttatgctttgtattatcttttagacaaacc 28501052  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 28076361 - 28076422
Alignment:
Q  162 tattacaagggtttataaatcaacttgagttttatgc-tttctattatcttttagacaaacc 222  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||| |||||    
T  28076361 tattacaagggtttataaatcaacttgacttttatgcttttgtattattttttagaaaaacc 28076422  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 28476109 - 28476050
Alignment:
Q  95 tttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 154  Q
    |||||||||||  |||| |||||||||||||||||||| || ||||||||| ||||||||    
T  28476109 tttaacaatttctagtcgatattttaattaattgtttagagggaccaagttttagatttc 28476050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 27995301 - 27995372
Alignment:
Q  32 tcatacggcttgaacatttgctgaaagtgtgctggagttaaggtaaccaacaaacaatcatgctttaacaattttcag 109  Q
    |||||| |||||||||||||||||||  ||||||||| ||||||    |||||||||||||  |||||||||||||||    
T  27995301 tcatacagcttgaacatttgctgaaa--gtgctggagataaggt----aacaaacaatcatattttaacaattttcag 27995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 8542951 - 8542915
Alignment:
Q  89 tcatgctttaacaattttcagtccatattttaattaa 125  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8542951 tcatactttaacaattttcagtccatattttaattaa 8542915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 28504182 - 28504146
Alignment:
Q  70 taaggtaaccaacaaacaatcatgctttaacaatttt 106  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28504182 taaggtaaccaacaaacaatcatactttaacaatttt 28504146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 28076300 - 28076347
Alignment:
Q  80 aacaaacaatcatgctttaacaattttcagtccatattttaattaatt 127  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  28076300 aacaaacaatcatactttaacaaatttcagtcgatatttttattaatt 28076347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 8542609 - 8542572
Alignment:
Q  117 tttaattaattgtttacagtgaccaagttctagatttc 154  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  8542609 tttaattaattgtttacagggaccaagttttagatttc 8542572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 28155924 - 28155952
Alignment:
Q  173 tttataaatcaacttgagttttatgcttt 201  Q
    |||||||||||||||||||||||||||||    
T  28155924 tttataaatcaacttgagttttatgcttt 28155952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 28174969 - 28174997
Alignment:
Q  173 tttataaatcaacttgagttttatgcttt 201  Q
    |||||||||||||||||||||||||||||    
T  28174969 tttataaatcaacttgagttttatgcttt 28174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 9392874 - 9392813
Alignment:
Q  162 tattacaagggtttataaatcaacttgagttttatgc-tttctattatcttttagacaaacc 222  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||    
T  9392874 tattgcaagggtttataaatcaacttgagttttatgcttttgtattattttttagagaaacc 9392813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 8697439 - 8697411
Alignment:
Q  168 aagggtttataaatcaacttgagttttat 196  Q
    |||||||||||||||||||||||||||||    
T  8697439 aagggtttataaatcaacttgagttttat 8697411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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