View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_50 (Length: 249)
Name: NF14649_low_50
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 3197600 - 3197379
Alignment:
| Q |
18 |
gcccctagtaagaagaaatctcaagctgcacctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctggggcggcccctagtaagaagaaat |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3197600 |
gcccctagtaagaagaaatctcaagctgcgcctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctgggacggcccctagtaagaagaaat |
3197501 |
T |
|
| Q |
118 |
ctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaa |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
3197500 |
ctgaagctgcgcctagaaagaagaaatctgaagctgccccaagtaaggtgaaatctgaggtggcccctagtaagaagaaatctcaagccgcccccaataa |
3197401 |
T |
|
| Q |
218 |
gaagaaatcagtttcccctatg |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3197400 |
gaagaaatcagtttcccctatg |
3197379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 3197759 - 3197554
Alignment:
| Q |
21 |
cctagtaagaagaaatctcaagctgcacctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctggggcggcccctagtaagaagaaatctg |
120 |
Q |
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|||||||||| ||||||| |||| |||||||| |||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3197759 |
cctagtaagatgaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaaggtgaaatctgaggcggcccctagtaagaagaaatctg |
3197660 |
T |
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| Q |
121 |
aagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaagaa |
220 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||| ||||| |
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| T |
3197659 |
aagctgcgcctagaaagaagaaatctgaagctttcccaagtaaggtgaaatctgaggcggcccctagtaagaagaaatctcaagctgcgcctagaaagaa |
3197560 |
T |
|
| Q |
221 |
gaaatc |
226 |
Q |
| |
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|||||| |
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| T |
3197559 |
gaaatc |
3197554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 3197681 - 3197473
Alignment:
| Q |
18 |
gcccctagtaagaagaaatctcaagctgcacctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctggggcggcccctagtaagaagaaat |
117 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
3197681 |
gcccctagtaagaagaaatctgaagctgcgcctagaaagaagaaatctgaagctttcccaagtaaggtgaaatctgaggcggcccctagtaagaagaaat |
3197582 |
T |
|
| Q |
118 |
ctgaagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaa |
217 |
Q |
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|| |||||||||||||||||||||||| ||||| | |||| |||||||||||||||| | ||||| |||||||||||||||| |||| || ||||| || |
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| T |
3197581 |
ctcaagctgcgcctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctgggacggcccctagtaagaagaaatctgaagctgcgcctagaaa |
3197482 |
T |
|
| Q |
218 |
gaagaaatc |
226 |
Q |
| |
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||||||||| |
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| T |
3197481 |
gaagaaatc |
3197473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 3197784 - 3197581
Alignment:
| Q |
23 |
tagtaagaagaaatctcaagctgcacctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctggggcggcccctagtaagaagaaatctgaa |
122 |
Q |
| |
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|||||||||||||||| ||||||| ||||| |||| ||||||||||| | || |||||| ||||||| | ||||| |||||| ||||||||| |
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| T |
3197784 |
tagtaagaagaaatctaaagctgctcctagtaagatgaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaaggtgaaatctgag |
3197685 |
T |
|
| Q |
123 |
gctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaagaaga |
222 |
Q |
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|| || ||||| |||||||||| ||||||||| || || ||| ||||||||| | || |||||| ||||||| | || |||||||||||||||| |
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| T |
3197684 |
gcggcccctagtaagaagaaatctgaagctgcgcctagaaagaagaaatctgaagctttcccaagtaaggtgaaatctgaggcggcccctagtaagaaga |
3197585 |
T |
|
| Q |
223 |
aatc |
226 |
Q |
| |
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|||| |
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|
| T |
3197584 |
aatc |
3197581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 3197796 - 3197629
Alignment:
| Q |
38 |
tcaagctgcacctagaaagaagaaatctgaagtttccccgagtaaggtgaaatctggggcggcccctagtaagaagaaatctgaagctgcgcctagaaag |
137 |
Q |
| |
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||||||||| | ||| |||||||||||| ||| | | || |||||| ||||||||| || || |||||||||||||||||| || |||| || || ||| |
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| T |
3197796 |
tcaagctgctcatagtaagaagaaatctaaagctgctcctagtaagatgaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaag |
3197697 |
T |
|
| Q |
138 |
aagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagc |
205 |
Q |
| |
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||||| ||| || ||||| |||||| ||||||||| | || | ||| |||||||||||| |||| |
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| T |
3197696 |
gtgaaatctgaggcggcccctagtaagaagaaatctgaagctgcgcctagaaagaagaaatctgaagc |
3197629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 3197794 - 3197697
Alignment:
| Q |
121 |
aagctgcgcctagaaagaagaaatttgaagctgccccaagtaaggtgaaatctgaggtggcccttagtaagaagaaatctcaagccgcccctagtaag |
218 |
Q |
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||||||| | ||| |||||||||| | ||||||| || |||||| |||||||||| | || | ||||||||||||||||||| | ||||| |||||| |
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| T |
3197794 |
aagctgctcatagtaagaagaaatctaaagctgctcctagtaagatgaaatctgaagccgcacctagtaagaagaaatctcaatctgccccgagtaag |
3197697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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