View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_54 (Length: 243)
Name: NF14649_low_54
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1977752 - 1977513
Alignment:
| Q |
1 |
aattctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttaccta |
100 |
Q |
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| T |
1977752 |
aattctagcactgatcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttaccta |
1977653 |
T |
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| Q |
101 |
caaatggaagcatatcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaa |
200 |
Q |
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| T |
1977652 |
caaatggaagcatatcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaa |
1977553 |
T |
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| Q |
201 |
cttggttgcatatgaatcatcggttggatcgggagctttg |
240 |
Q |
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| T |
1977552 |
cttggttgcatatgaatcatcggttggatcgggacctttg |
1977513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 1984645 - 1984434
Alignment:
| Q |
29 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
128 |
Q |
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| T |
1984645 |
cacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttt |
1984546 |
T |
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| Q |
129 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
228 |
Q |
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| T |
1984545 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttgga |
1984446 |
T |
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| Q |
229 |
tcgggagctttg |
240 |
Q |
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| T |
1984445 |
tcgggacctttg |
1984434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 1948668 - 1948887
Alignment:
| Q |
15 |
tcttgttaacaagccacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcata |
114 |
Q |
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|||| ||||||||||||||||||| || |||||| |||||||||||||| | |||||||| ||||||| ||||| | ||||| ||||| |||||| |
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| T |
1948668 |
tcttattaacaagccacctttgattgaagaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcata |
1948767 |
T |
|
| Q |
115 |
tcaagcattagttttgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatg |
214 |
Q |
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||||| |||||||||||||| ||||||| |||||| ||||||| || || | ||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
1948768 |
tcaagtattagttttgatgcaaaaacaagaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatg |
1948867 |
T |
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| Q |
215 |
aatcatcggttggatcggga |
234 |
Q |
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|||||||||||||||||||| |
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| T |
1948868 |
aatcatcggttggatcggga |
1948887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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