View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_6 (Length: 541)
Name: NF14649_low_6
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 29648972 - 29649498
Alignment:
| Q |
1 |
tgcaatgaaaacccttttacttacctaagcacagggtagacagtttccatgtagagtgaattttggtgtcttttgtacagtccagtaagatgagccatta |
100 |
Q |
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| T |
29648972 |
tgcaacgaaaacccttttacttacctaagcacagggtagacagtttccatgtagagtgaattttggtgtcttttgtacagtccagtaagatgagccatta |
29649071 |
T |
|
| Q |
101 |
aaacatatgcaccaaaaagtgcccaaaagcatccagtaaatagtcctgaatttatttggaagattcagttaattttatgagtaacttgctaaggaattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649072 |
aaacatatgcaccaaaaagtgcccaaaagcatccagtaaatagtcctgaatttatttggaagattcagttaattttatgagtaacttgctaaggaattta |
29649171 |
T |
|
| Q |
201 |
cactcatatcaaat-nnnnnnntcaaacatttttcatatataatgagttcttatcagaagtcggtgtaaaactattttaaaggataatgcgtctccatta |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649172 |
cactcatatcaaataaaaaaaatcaaacatttttcatatataatgagttcttatcagaagtcggtgtaaaactattttaaaggataatgcgtctccatta |
29649271 |
T |
|
| Q |
300 |
ggttccaaaag-nnnnnnnngacaaattatgaaatttacgcaaaacatttctataacatttgaatttgtaaaatagaatatggatttaattcaaatacac |
398 |
Q |
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| T |
29649272 |
ggttccaaaagtttttttttaacaaattatgaaatttacgcaaaacatttctataatatttgaatttgtaaaatagaatatggatttaattcaaatacac |
29649371 |
T |
|
| Q |
399 |
ggttggtgtaaagaatttttacattttcaattaatcataaccatcaaacaattataaacgtgtgacttttaccataacaactttgaagtcacatactcac |
498 |
Q |
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| T |
29649372 |
ggttggtgtaaagaatttttacattttcaattaatcataaccatcaaacaattataaacgtgtgacttttaccataacaactttgaagtcacatactcac |
29649471 |
T |
|
| Q |
499 |
acacatgattggttatgatgtggtgac |
525 |
Q |
| |
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| T |
29649472 |
acacatgattagttatgatgtggtgac |
29649498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 10823818 - 10823860
Alignment:
| Q |
237 |
atataatgagttcttatcagaagtcggtgtaaaactattttaa |
279 |
Q |
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| T |
10823818 |
atatgatgagttcttattagaagtcggtgtaaaactaatttaa |
10823860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 12395505 - 12395576
Alignment:
| Q |
381 |
gatttaattcaaatacacggttggtgtaaagaatttttacattttcaattaatcataaccatcaaacaatta |
452 |
Q |
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| T |
12395505 |
gatttaattcatatacactgtcagtgtaaagagattttacagtgtcaatcaatcataaccatcaaaaaatta |
12395576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 45112009 - 45112065
Alignment:
| Q |
382 |
atttaattcaaatacacggttggtgtaaagaatttttacattttcaattaatcataa |
438 |
Q |
| |
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|||||||||| ||| | |||| |||||||| |||||||||||||||| |||||||| |
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|
| T |
45112009 |
atttaattcatatagatggttagtgtaaagtttttttacattttcaataaatcataa |
45112065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 4860031 - 4859945
Alignment:
| Q |
381 |
gatttaattcaaatacacggttggtgtaaagaatttttacattttcaattaatcataaccatcaaacaattataaacgtgtgacttt |
467 |
Q |
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||||||||||| |||||| || |||||||||| |||| | | |||||||||||||||||||||| || || |||| | ||||||| |
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| T |
4860031 |
gatttaattcatatacaccgtcaatgtaaagaatctttagactgtcaattaatcataaccatcaaataaatagaaacttttgacttt |
4859945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 29784831 - 29784888
Alignment:
| Q |
379 |
tggatttaattcaaatacacggttggtgtaaagaatttttacattttcaattaatcataa |
438 |
Q |
| |
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||||||||||||| |||||| || || |||| |||||||||||| |||||||||||||| |
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| T |
29784831 |
tggatttaattcatatacac--tttgtataaataatttttacattgtcaattaatcataa |
29784888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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