View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_60 (Length: 238)
Name: NF14649_low_60
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41758358 - 41758138
Alignment:
| Q |
1 |
cgcatccacaatttgggaataaataaagtagcaattggattattggaaccaattgggtgtttacctgagataactttggtaactttccatcttagttgcg |
100 |
Q |
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| T |
41758358 |
cgcatccacaatttgggaataaataaagtagcaattggattattggaaccaattggatgtttacctgagataactttggtaactttccatcttagttgcg |
41758259 |
T |
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| Q |
101 |
ttgaccttttgaatttggtctcagaaaatcacaacaaattactactccaaactgtgctacaacttaaccaacaacaagttggaaaatcagtttatgtgac |
200 |
Q |
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| T |
41758258 |
ttgaccttttgaatttggtctcagaagatcacaacaaattactactccaaactgtgctacaacttaaccaacaacaagttggaaaatcagtttatgtgac |
41758159 |
T |
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| Q |
201 |
actagacctctacaatgcttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41758158 |
actagacctctacaatgcttt |
41758138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41754103 - 41753886
Alignment:
| Q |
1 |
cgcatccacaatttgggaataaataaagtagcaattggattattggaaccaattgggtgtttacctgagataactttggtaactttccatcttagttgcg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
41754103 |
cgcatccacaatttaggaataaataaagtagcaattgcgttattggaaccactcgggtgtttacctcggataaacgctgtaacttttcatcttagttgcg |
41754004 |
T |
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| Q |
101 |
ttgaccttttgaatttggtctcagaaaatcacaacaaattactactccaaactgtgctacaacttaaccaacaacaagttggaaaatcagtttatgtgac |
200 |
Q |
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| T |
41754003 |
tcgaccttttgaatttggtctcagaaaatcacaacaaattactactccaaactgtactacaacttaacc---aacaggttggaaaaccggtttacgtgac |
41753907 |
T |
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| Q |
201 |
actagacctctacaatgcttt |
221 |
Q |
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| T |
41753906 |
attagacctctataacgcttt |
41753886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 41739466 - 41739417
Alignment:
| Q |
13 |
ttgggaataaataaagtagcaattggattattggaaccaattgggtgttt |
62 |
Q |
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||||||||||||||| |||||||||||||||| ||||| || |||||||| |
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| T |
41739466 |
ttgggaataaataaaatagcaattggattattagaacctatagggtgttt |
41739417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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