View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_63 (Length: 236)
Name: NF14649_low_63
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 26556739 - 26556938
Alignment:
| Q |
17 |
atttgtctaccttcagatgatcacttaatggcaacatgattcttcttgtttaatggaaaatcgatagtagtacttaaaacttgaataaatacggcttgtg |
116 |
Q |
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| T |
26556739 |
atttgtctaccttcagatgatcacttaatggcaacatgattcttcttgtttaatggaaaatcgatagtagtacttaaaacttgaataaatacggcttgtg |
26556838 |
T |
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| Q |
117 |
cttaaaaaatgacaaatataatttgttgagtttactgatgttaggttcgcaaataagaacaatgtgaaatagataatccttggtagatgatgacctctag |
216 |
Q |
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| T |
26556839 |
cttaaaaaatgacaaatataattggttgagtttactgatgttaggttcgcaaataagaacaatgtgaaatagataatccttggtagatgatgacctctag |
26556938 |
T |
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Back To:
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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 21907457 - 21907572
Alignment:
| Q |
102 |
taaatacggcttgtgcttaaaaaatga-caaatataatttgttgagtttactgatgttaggttcgcaaataagaacaatgtgaaatagataatccttggt |
200 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
21907457 |
taaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttgctaacgttaggttcgcaaataagaacaatgtgaaataaataatccctggt |
21907556 |
T |
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| Q |
201 |
agatgatgacctctag |
216 |
Q |
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| T |
21907557 |
agatgatgatctctag |
21907572 |
T |
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