View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_66 (Length: 232)

Name: NF14649_low_66
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_66
NF14649_low_66
[»] chr1 (4 HSPs)
chr1 (15-215)||(44315516-44315716)
chr1 (95-215)||(44308475-44308595)
chr1 (95-215)||(44194516-44194636)
chr1 (95-215)||(44300950-44301070)
[»] chr3 (4 HSPs)
chr3 (59-215)||(23714912-23715068)
chr3 (59-215)||(23733368-23733524)
chr3 (59-215)||(23751823-23751979)
chr3 (111-215)||(23696507-23696611)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 44315716 - 44315516
Alignment:
Q  15 aaaatccaagcaacttttgaaatcccgaactactgaactataacaagaatctgcacatatgttcagcccttcagatttacttttctgtgccaaaccttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44315716 aaaatccaagcaacttttgaaatcccgaactactgaactataacaagaatctgcacatatgttcagcccttcagatttacttttctgtgccaaaccttta 44315617  T
Q  115 aggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttgcgagatttgtgggcttgata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44315616 aggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttgcgtgatttgtgggcttgata 44315517  T
Q  215 g 215  Q
    |    
T  44315516 g 44315516  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 44308595 - 44308475
Alignment:
Q  95 ttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttg 194  Q
    |||| |||||||| |||||||| |||||||||||||| ||||||||||| | ||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  44308595 ttttttgtgccaatcctttaagaaaagcttgtccttcgacagctttttttaaggccatttcaatgacagcctttgagagttgtttgtaattcttggcttg 44308496  T
Q  195 cgagatttgtgggcttgatag 215  Q
    || ||||||||||||||||||    
T  44308495 cgtgatttgtgggcttgatag 44308475  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 44194636 - 44194516
Alignment:
Q  95 ttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttg 194  Q
    |||| |||||||| |||||||| |||||||||||||| |||| |||||| ||||||||||||  || |||  ||||||||||||||| || |||||||||    
T  44194636 ttttttgtgccaatcctttaagaaaagcttgtccttcgacagatttttttatggcgatttcaacgacagctattgagagttgtttgttatccttggcttg 44194537  T
Q  195 cgagatttgtgggcttgatag 215  Q
    ||  ||||||||||| |||||    
T  44194536 cgctatttgtgggctcgatag 44194516  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 44301070 - 44300950
Alignment:
Q  95 ttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttg 194  Q
    |||| |||||||| |||||||| |||||||||||||| |||| |||||| ||||||||||||  || |||  ||||||||||||||| || |||||||||    
T  44301070 ttttttgtgccaatcctttaagaaaagcttgtccttcgacagatttttttatggcgatttcaacgacagctattgagagttgtttgttatccttggcttg 44300971  T
Q  195 cgagatttgtgggcttgatag 215  Q
    ||  ||||||||||| |||||    
T  44300970 cgctatttgtgggctcgatag 44300950  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 23714912 - 23715068
Alignment:
Q  59 aagaatctgcacatatgttcagcccttcagatttacttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagt 158  Q
    |||||| ||||||| |||  ||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||     
T  23714912 aagaatttgcacatgtgtcaagcacttgagatttacttttctgtgccaatcctttaaggaaagcttctccttcgacagcttttttaatggcgatttcagc 23715011  T
Q  159 gatagcctttgagagttgtttgtaattcttggcttgcgagatttgtgggcttgatag 215  Q
    || |||||||||||||| | |  ||||||||||||||| | ||||||||||||||||    
T  23715012 gacagcctttgagagttctgtccaattcttggcttgcgcggtttgtgggcttgatag 23715068  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 23733368 - 23733524
Alignment:
Q  59 aagaatctgcacatatgttcagcccttcagatttacttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagt 158  Q
    |||||| ||||||| |||  ||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||     
T  23733368 aagaatttgcacatgtgtcaagcacttgagatttacttttctgtgccaatcctttaaggaaagcttctccttcgacagcttttttaatggcgatttcagc 23733467  T
Q  159 gatagcctttgagagttgtttgtaattcttggcttgcgagatttgtgggcttgatag 215  Q
    || |||||||||||||| | |  ||||||||||||||| | ||||||||||||||||    
T  23733468 gacagcctttgagagttctgtccaattcttggcttgcgcggtttgtgggcttgatag 23733524  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 23751823 - 23751979
Alignment:
Q  59 aagaatctgcacatatgttcagcccttcagatttacttttctgtgccaaacctttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagt 158  Q
    |||||| ||||||| |||  ||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||     
T  23751823 aagaatttgcacatgtgtcaagcacttgagatttacttttctgtgccaatcctttaaggaaagcttctccttcgacagcttttttaatggcgatttcagc 23751922  T
Q  159 gatagcctttgagagttgtttgtaattcttggcttgcgagatttgtgggcttgatag 215  Q
    || |||||||||||||| | |  ||||||||||||||| | ||||||||||||||||    
T  23751923 gacagcctttgagagttctgtccaattcttggcttgcgcggtttgtgggcttgatag 23751979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 23696507 - 23696611
Alignment:
Q  111 tttaaggaaagcttgtccttcaacagcttttttcatggcgatttcagtgatagcctttgagagttgtttgtaattcttggcttgcgagatttgtgggctt 210  Q
    ||||| |||||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||| | |  ||||||||||||||| | |||||||||||    
T  23696507 tttaaagaaagcttctccttcgacagcttttttaatggcgatttcagcgacagcctttgagagttctgtccaattcttggcttgcgcggtttgtgggctt 23696606  T
Q  211 gatag 215  Q
    |||||    
T  23696607 gatag 23696611  T

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