View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_68 (Length: 229)

Name: NF14649_low_68
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_68
NF14649_low_68
[»] chr8 (6 HSPs)
chr8 (1-222)||(27870232-27870453)
chr8 (1-222)||(27976032-27976251)
chr8 (1-222)||(28033301-28033520)
chr8 (17-222)||(27964235-27964444)
chr8 (31-222)||(27881608-27881802)
chr8 (31-222)||(28021789-28021983)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27870232 - 27870453
Alignment:
Q  1 gattaataaactttactaaatgacaacaaattgtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatcttttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27870232 gattaataaactttactaaatgacaacaaattgtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatcttttaa 27870331  T
Q  101 tcaaattttagattattaaaatttcattatcatagaaagtggagggttttaacacaaaaaacactttcctccctctgctttatttataagaaagtcattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27870332 tcaaattttagattattaaaatttcattatcatagaaagtggagggttttaacacaaaaaacactttcctccctctgctttatttataagaaagtcattt 27870431  T
Q  201 ttcactttttaactgtcctttg 222  Q
    ||||||||||||||||||||||    
T  27870432 ttcactttttaactgtcctttg 27870453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27976032 - 27976251
Alignment:
Q  1 gattaataaactttactaaatgacaacaaatt-gtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatctttta 99  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  27976032 gattaataaactttactaaatgacagcaaatttgtttggagttgcttgtgtttgaatta-----tgaaacaattcttgatctcacttaatttatctttta 27976126  T
Q  100 atcaaattttagattattaaaatttcattatcatagaaagtggagggttttaacacaaaaaacactttcctccctct-gctttatttataagaaagtcat 198  Q
    ||||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||    
T  27976127 atcaaatttcagattactaagattttattatcatagaaagtggagggttttaacacaaaaaacactttactccctctatctttattgataagaaagtcat 27976226  T
Q  199 ttttca-ctttttaactgtcctttg 222  Q
    ||||||  |||||||||||| ||||    
T  27976227 ttttcatttttttaactgtcttttg 27976251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28033301 - 28033520
Alignment:
Q  1 gattaataaactttactaaatgacaacaaatt-gtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatctttta 99  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  28033301 gattaataaactttactaaatgacagcaaatttgtttggagttgcttgtgtttgaatta-----tgaaacaattcttgatctcacttaatttatctttta 28033395  T
Q  100 atcaaattttagattattaaaatttcattatcatagaaagtggagggttttaacacaaaaaacactttcctccctct-gctttatttataagaaagtcat 198  Q
    ||||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||    
T  28033396 atcaaatttcagattactaagattttattatcatagaaagtggagggttttaacacaaaaaacactttactccctctatctttattgataagaaagtcat 28033495  T
Q  199 ttttca-ctttttaactgtcctttg 222  Q
    ||||||  |||||||||||| ||||    
T  28033496 ttttcatttttttaactgtcttttg 28033520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 27964235 - 27964444
Alignment:
Q  17 taaatgacaacaaatt-gtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatcttttaatcaaattttagatta 115  Q
    ||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  27964235 taaatgacagcaaatttgtttggagttgcttgtgtttgaat-catgagtgaaacaattttttatctcacttaatttatcttttaatcaaatttcagatta 27964333  T
Q  116 ttaaaatttcattatcatagaaagtggagggttttaacac--aaaaaacac-tttcctccctctg-ctttatttataagaaagtcatttttcacttttta 211  Q
     ||| |||||||| ||||||||||| ||||||||||||||  ||||||||| ||| |||| |||| |||||||||||||||| | |||||||||||||||    
T  27964334 ctaagatttcattgtcatagaaagtagagggttttaacaccaaaaaaacacttttactccttctgtctttatttataagaaaattatttttcacttttta 27964433  T
Q  212 actgtcctttg 222  Q
    | |||||||||    
T  27964434 attgtcctttg 27964444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 27881608 - 27881802
Alignment:
Q  31 ttgtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatcttttaatcaaattttagattattaaaatttcattat 130  Q
    |||||| ||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  27881608 ttgtttagagttgcttgtgtttgaat-catgagtgaaacaattttttatctcacttaatttatcttttaatcaaatttcagattactaagatttcattat 27881706  T
Q  131 catagaaagtggagggttttaacac--aaaaaacac-tttcctccctctg-ctttatttataagaaagtcatttttcactttttaactgtcctttg 222  Q
    |||||||||| ||||||||||||||  | ||||||| ||| |||| |||| |||||||||||||||| | |||||||||||||||| |||||||||    
T  27881707 catagaaagtagagggttttaacaccaacaaaacacttttactccttctgtctttatttataagaaaattatttttcactttttaattgtcctttg 27881802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 28021789 - 28021983
Alignment:
Q  31 ttgtttggagttgcttgtgtttgaattcgtgagtgaaacaattcttgatctcacttaatttatcttttaatcaaattttagattattaaaatttcattat 130  Q
    |||||| ||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  28021789 ttgtttagagttgcttgtgtttgaat-catgagtgaaacaattttttatctcacttaatttatcttttaatcaaatttcagattactaagatttcattat 28021887  T
Q  131 catagaaagtggagggttttaacac--aaaaaacac-tttcctccctctg-ctttatttataagaaagtcatttttcactttttaactgtcctttg 222  Q
    |||||||||| ||||||||||||||  | ||||||| ||| |||| |||| |||||||||||||||| | |||||||||||||||| |||||||||    
T  28021888 catagaaagtagagggttttaacaccaacaaaacacttttactccttctgtctttatttataagaaaattatttttcactttttaattgtcctttg 28021983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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