View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_69 (Length: 228)

Name: NF14649_low_69
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_69
NF14649_low_69
[»] chr8 (23 HSPs)
chr8 (16-209)||(25133852-25134047)
chr8 (153-209)||(29050531-29050587)
chr8 (153-202)||(42803895-42803944)
chr8 (153-209)||(34618557-34618613)
chr8 (153-209)||(42353058-42353114)
chr8 (159-209)||(5964608-5964658)
chr8 (159-205)||(14912562-14912608)
chr8 (159-191)||(34900182-34900214)
chr8 (153-209)||(45069197-45069253)
chr8 (153-209)||(45237143-45237199)
chr8 (153-208)||(11687375-11687430)
chr8 (159-198)||(36860013-36860052)
chr8 (159-205)||(17155245-17155291)
chr8 (159-205)||(22215894-22215940)
chr8 (159-209)||(32175794-32175844)
chr8 (159-205)||(35159509-35159555)
chr8 (159-216)||(31641271-31641328)
chr8 (153-209)||(39103561-39103618)
chr8 (153-190)||(40210610-40210647)
chr8 (153-205)||(7303993-7304045)
chr8 (153-205)||(18147038-18147090)
chr8 (159-191)||(35397280-35397312)
chr8 (153-205)||(45235616-45235668)
[»] chr7 (24 HSPs)
chr7 (153-209)||(30583333-30583389)
chr7 (153-209)||(30998651-30998707)
chr7 (159-205)||(31031240-31031286)
chr7 (153-205)||(37657484-37657536)
chr7 (153-209)||(35669742-35669798)
chr7 (153-209)||(42831974-42832030)
chr7 (162-205)||(42264530-42264573)
chr7 (154-209)||(42328285-42328340)
chr7 (175-209)||(24071159-24071193)
chr7 (159-205)||(27827542-27827588)
chr7 (159-209)||(28236010-28236060)
chr7 (159-205)||(28493485-28493531)
chr7 (159-205)||(31226166-31226212)
chr7 (159-204)||(46536916-46536961)
chr7 (154-199)||(46899332-46899377)
chr7 (153-209)||(595403-595459)
chr7 (159-195)||(4061437-4061473)
chr7 (159-195)||(6244664-6244700)
chr7 (165-209)||(9805981-9806025)
chr7 (154-218)||(21263412-21263476)
chr7 (153-205)||(39869379-39869431)
chr7 (153-205)||(42831277-42831329)
chr7 (159-195)||(43154340-43154376)
chr7 (153-209)||(47253629-47253685)
[»] chr4 (16 HSPs)
chr4 (153-209)||(26188762-26188818)
chr4 (163-209)||(40675466-40675512)
chr4 (153-209)||(8079550-8079606)
chr4 (153-209)||(28460278-28460334)
chr4 (154-209)||(2942889-2942944)
chr4 (159-198)||(45559907-45559946)
chr4 (159-201)||(20530384-20530426)
chr4 (159-205)||(37113605-37113651)
chr4 (153-203)||(40686415-40686465)
chr4 (159-205)||(45109023-45109069)
chr4 (153-209)||(10657930-10657986)
chr4 (153-209)||(10872075-10872131)
chr4 (159-191)||(32013171-32013203)
chr4 (169-209)||(44587593-44587633)
chr4 (153-209)||(49647796-49647852)
chr4 (153-209)||(55611301-55611357)
[»] chr2 (14 HSPs)
chr2 (153-209)||(6433050-6433106)
chr2 (153-209)||(18109086-18109142)
chr2 (161-208)||(34246096-34246143)
chr2 (159-205)||(15264723-15264769)
chr2 (153-209)||(11447893-11447949)
chr2 (153-209)||(37241856-37241912)
chr2 (163-210)||(2710805-2710852)
chr2 (159-208)||(42520551-42520600)
chr2 (161-218)||(43496865-43496922)
chr2 (153-209)||(239909-239965)
chr2 (153-209)||(6320308-6320364)
chr2 (159-191)||(8876647-8876679)
chr2 (153-209)||(36601942-36601998)
chr2 (153-209)||(40861604-40861660)
[»] chr1 (15 HSPs)
chr1 (153-209)||(34086886-34086942)
chr1 (159-205)||(1189360-1189406)
chr1 (159-205)||(46311912-46311958)
chr1 (153-205)||(25366430-25366482)
chr1 (159-205)||(12769830-12769876)
chr1 (159-209)||(23260048-23260098)
chr1 (153-209)||(42627621-42627677)
chr1 (153-208)||(41865904-41865959)
chr1 (159-205)||(27748400-27748446)
chr1 (159-209)||(31657021-31657071)
chr1 (153-209)||(39324918-39324975)
chr1 (157-209)||(18034150-18034202)
chr1 (153-209)||(20470258-20470313)
chr1 (153-209)||(44109301-44109357)
chr1 (159-191)||(47325857-47325889)
[»] chr6 (9 HSPs)
chr6 (159-209)||(5957063-5957113)
chr6 (153-209)||(1790446-1790502)
chr6 (159-210)||(14856290-14856341)
chr6 (153-209)||(31258936-31258992)
chr6 (159-210)||(13755568-13755619)
chr6 (159-205)||(22708150-22708196)
chr6 (154-216)||(32560700-32560762)
chr6 (154-216)||(32561658-32561720)
chr6 (153-209)||(18802381-18802437)
[»] chr5 (17 HSPs)
chr5 (159-205)||(22778005-22778051)
chr5 (160-209)||(43347701-43347750)
chr5 (159-217)||(7614263-7614321)
chr5 (159-205)||(36944116-36944162)
chr5 (154-199)||(35767218-35767263)
chr5 (153-209)||(5101324-5101380)
chr5 (153-209)||(11576232-11576288)
chr5 (153-209)||(15526116-15526172)
chr5 (153-209)||(20768245-20768301)
chr5 (159-209)||(5049434-5049484)
chr5 (159-205)||(12282444-12282490)
chr5 (153-203)||(13019683-13019733)
chr5 (159-205)||(41733527-41733573)
chr5 (159-208)||(24172121-24172170)
chr5 (159-195)||(12953073-12953109)
chr5 (159-191)||(27812286-27812318)
chr5 (159-195)||(35639590-35639626)
[»] chr3 (20 HSPs)
chr3 (153-209)||(38732820-38732876)
chr3 (153-216)||(5506639-5506702)
chr3 (153-216)||(48072812-48072875)
chr3 (159-205)||(30317214-30317260)
chr3 (159-205)||(51063680-51063726)
chr3 (153-209)||(22979778-22979834)
chr3 (159-203)||(48104259-48104303)
chr3 (153-216)||(7042500-7042563)
chr3 (153-208)||(47551731-47551786)
chr3 (153-208)||(52959966-52960021)
chr3 (159-205)||(8880202-8880248)
chr3 (159-209)||(12121553-12121603)
chr3 (159-205)||(35406393-35406439)
chr3 (153-209)||(35324180-35324237)
chr3 (159-216)||(50936533-50936590)
chr3 (153-205)||(4071481-4071533)
chr3 (153-205)||(9558278-9558330)
chr3 (165-205)||(19275885-19275925)
chr3 (153-205)||(36659506-36659558)
chr3 (153-209)||(43358583-43358639)
[»] scaffold0014 (1 HSPs)
scaffold0014 (159-209)||(70757-70807)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 25134047 - 25133852
Alignment:
Q  16 aatatattcaataacaacgacctctactaaagtaccagattagaaatcctctcatttaattaattatatcagcaatttagaaatgcaggcatatatcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25134047 aatatattcaataacaacgacctctactaaagtaccagattagaaatcctctcatttaattaattatatcagcaatttagaaatgcaagcatatatcttt 25133948  T
Q  116 tatctatctat----ctatatatgtaaaaattctactgagcggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    |||||||||||    |||||||||||||||||||||| |  ||||| |||| |||||||||| |||||| |||||||||| ||||||| |||||||||    
T  25133947 tatctatctatctatctatatatgtaaaaattctactaa--ggtgtgtttgataaaaataagctataagctagctgatagctgaaaagctagcttata 25133852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 29050531 - 29050587
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  29050531 ggtgtgtttggtaaaaataagttataagttagatgatagctgaaaagctagcttata 29050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 42803944 - 42803895
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagtta 202  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  42803944 ggtgtgtttggtaaaaagaagctataagttagctgatagttgaaaagtta 42803895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 34618613 - 34618557
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||| |||| ||||||||||||||||| ||||||| |||||||||    
T  34618613 ggtgtgtttggtaaaattaagctataagttagctgatagctgaaaagctagcttata 34618557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 42353058 - 42353114
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  42353058 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaagctagcttata 42353114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 5964608 - 5964658
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    |||||||||| |||| |||||| |||||||||| |||||||||||||||||    
T  5964608 tttggtaaaattaagctataaggtagctgatagctgaaaagttagcttata 5964658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 14912608 - 14912562
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  14912608 tttggtaaaaataagctataagctagctgatagctgaaaagttagct 14912562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 34900182 - 34900214
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    |||||||||||||||||||||||||||||||||    
T  34900182 tttggtaaaaataagttataagttagctgatag 34900214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 45069197 - 45069253
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  45069197 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 45069253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 45237143 - 45237199
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| |||||||||| ||||||  |||||||||    
T  45237143 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaaactagcttata 45237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 11687430 - 11687375
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||| ||||||||||||||| |||||| |||||||||| ||||||  ||||||||    
T  11687430 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaatctagcttat 11687375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 36860052 - 36860013
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaa 198  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  36860052 tttggtaaaaataagctataagctagctgatagttgaaaa 36860013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 17155245 - 17155291
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |||||    
T  17155245 tttgctaaaaataagttataagctagctgatagctgaaaagctagct 17155291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 22215940 - 22215894
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| ||| |||||| |||||||||||||    
T  22215940 tttggtaaaaataagctataagctagttgatagctgaaaagttagct 22215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 32175844 - 32175794
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  32175844 tttggtaaaaagaagctataagctagctgatagctgaaaagctagcttata 32175794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 35159509 - 35159555
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||  ||||||||||||||||| ||||||| |||||    
T  35159509 tttggtaaaaataaactataagttagctgatagctgaaaagctagct 35159555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 31641271 - 31641328
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    |||| ||||||||||||||||| ||| ||| || ||||||| |||||||||| |||||    
T  31641271 tttgctaaaaataagttataagctagttgaaagctgaaaagctagcttataattgatg 31641328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 39103561 - 39103618
Alignment:
Q  153 ggtgtctttggtaaaaataa-gttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| || | |||||| |||||||||| |||||||||||||||||    
T  39103561 ggtgtgtttggtaaaaaaaaagctataagctagctgatagctgaaaagttagcttata 39103618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 40210647 - 40210610
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgata 190  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  40210647 ggtgtgtttggtaaaaataagttataagctagctgata 40210610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 7304045 - 7303993
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| ||||||||||| ||||||||||| ||||||||| ||| ||| |||||    
T  7304045 ggtgtgtttggtaaaaagaagttataagtcagctgatagctgacaagctagct 7303993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 18147090 - 18147038
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| ||||||||||| ||| ||||||||||||||||| ||| ||| |||||    
T  18147090 ggtgtgtttggtaaaaaaaagctataagttagctgatagctgataagctagct 18147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 35397280 - 35397312
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    ||||||||||||||| |||||||||||||||||    
T  35397280 tttggtaaaaataagctataagttagctgatag 35397312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 45235616 - 45235668
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| |||| ||||||||||||||||| || ||||||| ||||||| |||||    
T  45235616 ggtgtgtttgataaaaataagttataagctaactgatagctgaaaagctagct 45235668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 30583389 - 30583333
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  30583389 ggtgtgtttggtaaaaaaaagttataagttagctgatagctgaaaagctagcttata 30583333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 30998651 - 30998707
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  30998651 ggtgtgtttggtaaaaataagttataagctaactgatagttgaaaagttaacttata 30998707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 31031240 - 31031286
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  31031240 tttggtaaaaataagctataagttagctgatagttgataagttagct 31031286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 37657484 - 37657536
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  37657484 ggtgtgtttggtaaaaaaaagttataagttagctgatagctgacaagttagct 37657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 35669742 - 35669798
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  35669742 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 35669798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 42832030 - 42831974
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||||  |||||||||    
T  42832030 ggtgtgtttggtaaaaataagttataagctagctgaaagctgaaaaactagcttata 42831974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 42264530 - 42264573
Alignment:
Q  162 ggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||||||||| |||||| |||||||||| |||||||||||||    
T  42264530 ggtaaaaataagctataagctagctgatagctgaaaagttagct 42264573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 42328285 - 42328340
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    |||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  42328285 gtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 42328340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 24071159 - 24071193
Alignment:
Q  175 tataagttagctgatagttgaaaagttagcttata 209  Q
    |||||||||| ||||||||||||||||||||||||    
T  24071159 tataagttagttgatagttgaaaagttagcttata 24071193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 27827588 - 27827542
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| ||||||| |||||    
T  27827588 tttggtaaaaataagctataagctagctgatagctgaaaagctagct 27827542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 28236060 - 28236010
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  28236060 tttggtaaaaagaagctataagctagctgatagctgaaaagctagcttata 28236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 28493485 - 28493531
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||| ||| ||||||||||||||||| ||||||| |||||    
T  28493485 tttggtaaaaagaagctataagttagctgatagctgaaaagctagct 28493531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 31226166 - 31226212
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| ||||||| |||||    
T  31226166 tttggtaaaaataagctataagctagctgatagctgaaaagctagct 31226212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 46536961 - 46536916
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagc 204  Q
    ||||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  46536961 tttggtaaaaacaagctataagttagctgatagctgataagttagc 46536916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 46899377 - 46899332
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaag 199  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  46899377 gtgtgtttggtaaaaagaagctataagttagctgatagctgaaaag 46899332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 595403 - 595459
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  595403 ggtgtgtttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 4061473 - 4061437
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttga 195  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  4061473 tttggtaaaaataagctataagctagctgatagttga 4061437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 6244700 - 6244664
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttga 195  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  6244700 tttggtaaaaataagctataagttagttgatagttga 6244664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 9805981 - 9806025
Alignment:
Q  165 aaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||| |||||| |||||||||| |||||||||||||||||    
T  9805981 aaaaaaaagctataagctagctgatagctgaaaagttagcttata 9806025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 21263476 - 21263412
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatgat 218  Q
    |||| ||||||||||| |||||||||  |||||||||| ||||||  |||||||||  |||||||    
T  21263476 gtgtgtttggtaaaaagaagttataaactagctgatagctgaaaaactagcttatagctgatgat 21263412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39869379 - 39869431
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| ||||||||||| |||||||||| ||||| |||||||| ||| |||||    
T  39869379 ggtgtgtttggtaaaaaaaagttataagctagctaatagttgataagctagct 39869431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 42831329 - 42831277
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| || |||||||||||| |||||| |||||||||| ||||||| |||||    
T  42831329 ggtgtgttcggtaaaaataagctataagctagctgatagctgaaaagctagct 42831277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 43154340 - 43154376
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttga 195  Q
    |||||||||||||||||||||  ||||||||||||||    
T  43154340 tttggtaaaaataagttataaactagctgatagttga 43154376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 47253685 - 47253629
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  47253685 ggtgtgtttggtaaaaataagatataagctagctgaaagctgaaaaactagcttata 47253629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 26188762 - 26188818
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  26188762 ggtgtgtttggtaaaaataagctataagttagccgatagctgaaaagttagcttata 26188818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 40675512 - 40675466
Alignment:
Q  163 gtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||    
T  40675512 gtaaaaaaaagttataagttagctgatagttgaaaaactagcttata 40675466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 8079606 - 8079550
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||||  |||||||||    
T  8079606 ggtgtgtttggtaaaaataagttataagctagctgaaagctgaaaaactagcttata 8079550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 28460334 - 28460278
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||||||||||  |||||||||    
T  28460334 ggtgtgtttggtaaaaaaaagctataagctagctgatagttgaaaaactagcttata 28460278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 2942889 - 2942944
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    |||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  2942889 gtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 2942944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 45559907 - 45559946
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaa 198  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  45559907 tttggtaaaaataaactataagttagctgatagttgaaaa 45559946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 20530384 - 20530426
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagtt 201  Q
    |||| |||||||||| ||||||||||||||||| |||||||||    
T  20530384 tttgataaaaataagctataagttagctgatagctgaaaagtt 20530426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 37113605 - 37113651
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||  |||||||||| |||||||||||||    
T  37113605 tttggtaaaaataagctataaactagctgatagctgaaaagttagct 37113651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 40686465 - 40686415
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttag 203  Q
    ||||| |||||||||| |||| |||||| |||||||||| |||||||||||    
T  40686465 ggtgtgtttggtaaaattaagctataagctagctgatagctgaaaagttag 40686415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 45109023 - 45109069
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||    
T  45109023 tttggtaaaattaagttataagctagctgatagctgataagttagct 45109069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 10657930 - 10657986
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  10657930 ggtgtatttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 10657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 10872075 - 10872131
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  10872075 ggtgtatttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 10872131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 32013203 - 32013171
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    ||||||||||||||| |||||||||||||||||    
T  32013203 tttggtaaaaataagctataagttagctgatag 32013171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 44587593 - 44587633
Alignment:
Q  169 ataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||||||| ||||||||| |||||||| ||||||    
T  44587593 ataagttataagttatctgatagttaaaaagttaacttata 44587633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 49647796 - 49647852
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| ||||||| |  ||||||  |||||||||    
T  49647796 ggtgtgtttggtaaaaataagttataagctagctgaaaactgaaaatctagcttata 49647852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 55611357 - 55611301
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||  |||||| |||||||||| ||||||| |||||||||    
T  55611357 ggtgtgtttggtaaaaaaaaactataagctagctgatagctgaaaagctagcttata 55611301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 6433106 - 6433050
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  6433106 ggtgtgtttggcaaaaatgagttataagctagctgatagttgaaaagttagcttata 6433050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 18109086 - 18109142
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||||    
T  18109086 ggtgtgtttggtaaaaaaaagttataagctagctgatagctgaaaagctagcttata 18109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 34246143 - 34246096
Alignment:
Q  161 tggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  34246143 tggtaaaaataagttataagttagctgatagctgaaaagcttgcttat 34246096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 15264723 - 15264769
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||    
T  15264723 tttggtaaaaataagttataagctagctgatagctgaaaagctagct 15264769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 11447949 - 11447893
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  11447949 ggtgtgtttggtaaaaacaagctataagctagctgatagctgaaaagctagcttata 11447893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 37241912 - 37241856
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||| |||||||||| |||||| || ||||||| |||||||||||||||||    
T  37241912 ggtgtgtttgataaaaataagctataagctaactgatagctgaaaagttagcttata 37241856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 2710852 - 2710805
Alignment:
Q  163 gtaaaaataagttataagttagctgatagttgaaaagttagcttataa 210  Q
    |||||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  2710852 gtaaaattaagttataagttagttgatagttgaaaagctagtttataa 2710805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 42520600 - 42520551
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||||||||||||| |||||| |||||||||| ||||||| | ||||||    
T  42520600 tttggtaaaaataagctataagctagctgatagctgaaaagcttgcttat 42520551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 43496922 - 43496865
Alignment:
Q  161 tggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatgat 218  Q
    ||||||||| ||| |||||| |||||| ||||||||||| |||||||||  |||||||    
T  43496922 tggtaaaaaaaagctataagctagctggtagttgaaaagctagcttatagctgatgat 43496865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 239909 - 239965
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| || ||||||| ||||||  |||||||||    
T  239909 ggtgtgtttggtaaaaataagctataagctatctgatagctgaaaaactagcttata 239965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 6320364 - 6320308
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  6320364 ggtgtatttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 6320308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 8876679 - 8876647
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    ||||||||||||||| |||||||||||||||||    
T  8876679 tttggtaaaaataagctataagttagctgatag 8876647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 36601942 - 36601998
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  36601942 ggtgtgtttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 36601998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 40861604 - 40861660
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| ||| |||||    
T  40861604 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagtttata 40861660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 34086942 - 34086886
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  34086942 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaagttagcttata 34086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 1189360 - 1189406
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  1189360 tttggtaaaaataagttataagttagctgatagctgaaaagctagct 1189406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 46311912 - 46311958
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  46311912 tttggtaaaaataagctattagttagctgatagttgaaaagttagct 46311958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 25366482 - 25366430
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| |||||||||| |||| |||||| ||||||||||||||||||||||||    
T  25366482 ggtgtgtttggtaaaattaagctataagctagctgatagttgaaaagttagct 25366430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 12769830 - 12769876
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  12769830 tttggtaaaaataagctataagctagctgatagctgaaaagttagct 12769876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 23260098 - 23260048
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  23260098 tttggtaaaaataagctataagctagctgaaagttgaaaagctagcttata 23260048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 42627621 - 42627677
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  42627621 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 42627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 41865959 - 41865904
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||| ||||||||||  |||||||||| ||| |||||| ||||||||||||||||    
T  41865959 ggtgtgtttggtaaaatgaagttataagctagttgatagctgaaaagttagcttat 41865904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 27748446 - 27748400
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  27748446 tttggtaaaaataagttataagctagctgatacctgaaaagctagct 27748400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 31657071 - 31657021
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  31657071 tttggtaaaaaaaagctataagctagctgatagctgaaaagctagcttata 31657021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 39324918 - 39324975
Alignment:
Q  153 ggtgtctttggtaaaaataa-gttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  39324918 ggtgtgtttggtaaaaaaaaagctataagttagttgatagctgaaaagttagcttata 39324975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 18034150 - 18034202
Alignment:
Q  157 tctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    |||||| ||||||||||||||||| |||||| ||| ||||||  |||||||||    
T  18034150 tctttgttaaaaataagttataagctagctgctagctgaaaaactagcttata 18034202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 20470313 - 20470258
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||||||| |||||||||||||| ||| |||||    
T  20470313 ggtgtgtttggtaaaaa-aagctataagttagttgatagttgaaaagctagtttata 20470258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 44109301 - 44109357
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| || |||| || ||||||  |||||||||    
T  44109301 ggtgtgtttggtaaaaataagttataagctaactgaaagctgaaaaactagcttata 44109357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 47325857 - 47325889
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    |||||||||||||||||||||| ||||||||||    
T  47325857 tttggtaaaaataagttataagctagctgatag 47325889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 5957113 - 5957063
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  5957113 tttggtaaaaataagctataagttagctgatagctgaaaagctagcttata 5957063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 1790502 - 1790446
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  1790502 ggtgtgtttggtaaaaaaaagctataagttagctgatagctgaaaagctagcttata 1790446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 14856341 - 14856290
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttataa 210  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||||||||    
T  14856341 tttggtaaaaataagctataagctagctgatagctgaaaagctagcttataa 14856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 31258936 - 31258992
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||||||| |||||||||||||| ||| |||||    
T  31258936 ggtgtgtttggtaaaaaaaagctataagttagttgatagttgaaaagctagtttata 31258992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 13755568 - 13755619
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttataa 210  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||| ||||    
T  13755568 tttggtaaaaataagctataagctagctgatagctgaaaagctagctgataa 13755619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 22708196 - 22708150
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| ||||||| |||||    
T  22708196 tttggtaaaaataagctataagctagctgatagctgaaaagctagct 22708150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 32560762 - 32560700
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    |||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||| |||||    
T  32560762 gtgtgtttggtaaaaataagctataagctagctgaaagctgaaaaactagcttataactgatg 32560700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 32561658 - 32561720
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    |||| ||||||||||| |||||||||| ||||||| |||| ||||  |||||||||| |||||    
T  32561658 gtgtgtttggtaaaaagaagttataagctagctgaaagtttaaaaactagcttataactgatg 32561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 18802437 - 18802381
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||||||| ||| |||||    
T  18802437 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagctagtttata 18802381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 22778051 - 22778005
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  22778051 tttggtaaaaataagttataagctagctgatagctgaaaagttagct 22778005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 43347750 - 43347701
Alignment:
Q  160 ttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  43347750 ttggtaaaattaagctataagttagctgatagctgaaaagttagcttata 43347701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 7614263 - 7614321
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatga 217  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||| |||| ||||||    
T  7614263 tttggtaaaaataagctataagctagctgatagctgaaaagctagctgataactgatga 7614321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 36944116 - 36944162
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  36944116 tttggtaaaaagaagtcataagctagctgatagttgaaaagttagct 36944162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 35767263 - 35767218
Alignment:
Q  154 gtgtctttggtaaaaataagttataagttagctgatagttgaaaag 199  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||||    
T  35767263 gtgtgtttggtaaaaagaagttataagttagctgatagctgaaaag 35767218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 5101324 - 5101380
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||||||||||| || ||||||  |||||||||    
T  5101324 ggtgtgtttggtaaaaataagctataagttagctgaaagctgaaaaactagcttata 5101380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 11576288 - 11576232
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| || ||||||| ||||||| |||||||||    
T  11576288 ggtgtgtttggtaaaaataagctataagctatctgatagctgaaaagctagcttata 11576232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 15526116 - 15526172
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||||  |||||||||    
T  15526116 ggtgtgtttggtaaaaataagttataagctagctgaaagctgaaaaactagcttata 15526172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 20768245 - 20768301
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| ||| |||||| |||||||||||||||||  |||||||||    
T  20768245 ggtgtgtttggtaaaaaaaagctataagctagctgatagttgaaaaactagcttata 20768301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 5049434 - 5049484
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| |||||||||    
T  5049434 tttggtaaaaagaagctataagctagctgatagctgaaaagctagcttata 5049484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 12282490 - 12282444
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||  |||||||||| |||||| |||||||||||||    
T  12282490 tttggtaaaaataaactataagttagttgatagctgaaaagttagct 12282444  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 13019733 - 13019683
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttag 203  Q
    ||||| ||||||||||| ||| |||||| |||||||||| |||||||||||    
T  13019733 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgaaaagttag 13019683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 41733527 - 41733573
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||||| |||||||| ||||||||||||||||| ||||||| |||||    
T  41733527 tttggttaaaataagctataagttagctgatagctgaaaagctagct 41733573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 24172170 - 24172121
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||||||||||||| |||||| |||||||||| ||||||| | ||||||    
T  24172170 tttggtaaaaataagctataagctagctgatagctgaaaagcttgcttat 24172121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 12953073 - 12953109
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttga 195  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  12953073 tttggtaaaaataagctataagttagttgatagttga 12953109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 27812286 - 27812318
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatag 191  Q
    ||||||||||||||| |||||||||||||||||    
T  27812286 tttggtaaaaataagctataagttagctgatag 27812318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 35639626 - 35639590
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttga 195  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  35639626 tttggtaaaaataagctataagctagctgatagttga 35639590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 38732876 - 38732820
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  38732876 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaagctagcttata 38732820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 5506702 - 5506639
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    ||||| ||||||||||||||| |||||| |||||||||| ||||||| |||| ||||| |||||    
T  5506702 ggtgtgtttggtaaaaataagctataagctagctgatagctgaaaagctagcatataactgatg 5506639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 48072875 - 48072812
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    ||||| |||| ||||||||||||||||| ||| ||| || |||||||||||||||||| |||||    
T  48072875 ggtgtgtttgataaaaataagttataagctagttgaaagctgaaaagttagcttataattgatg 48072812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 30317214 - 30317260
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  30317214 tttggtaaaaataagctataagatagctgatagatgaaaagttagct 30317260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 51063726 - 51063680
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  51063726 tttggtaaaaataagctataagttagctgatagctgataagttagct 51063680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 22979778 - 22979834
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| |||||||||||||||||||||| ||||||| || ||||||  |||||||||    
T  22979778 ggtgtgtttggtaaaaataagttataagctagctgaaagctgaaaaactagcttata 22979834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 48104259 - 48104303
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttag 203  Q
    |||||||||| |||||||||||||| ||||||| |||||||||||    
T  48104259 tttggtaaaattaagttataagttaactgatagctgaaaagttag 48104303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 7042563 - 7042500
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  ||||||||| ||||||    
T  7042563 ggtgtgtttggtaaaaataagctataagctagctgaaagctgaaaaactagcttataggtgatg 7042500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 47551786 - 47551731
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||| ||||||||||| ||| ||||||||||||||||| ||||||| || |||||    
T  47551786 ggtgtgtttggtaaaaagaagctataagttagctgatagctgaaaagctaacttat 47551731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 52960021 - 52959966
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttat 208  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||| |||||    
T  52960021 ggtgtgttgggtaaaaataagctataagttagctgatagctgaaaaattaacttat 52959966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 8880248 - 8880202
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||||||||| |||||  |||||||||| |||||||||||||    
T  8880248 tttggtaaaaataagctataaactagctgatagctgaaaagttagct 8880202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 12121553 - 12121603
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||||||| |||||| || ||||||| ||||||| |||||||||    
T  12121553 tttggtaaaaataagctataagctaactgatagctgaaaagctagcttata 12121603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 35406439 - 35406393
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    |||| |||||||||| ||||||||||||||||| ||||||| |||||    
T  35406439 tttgataaaaataagctataagttagctgatagctgaaaagctagct 35406393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 35324180 - 35324237
Alignment:
Q  153 ggtgtctttggtaaaaataa-gttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||| || | |||||| |||||||||| |||||||||||||||||    
T  35324180 ggtgtgtttggtaaaaaaaaagctataagctagctgatagctgaaaagttagcttata 35324237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 50936590 - 50936533
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttataagtgatg 216  Q
    ||||||||||||||| |||||| ||||||| || ||||||  |||||||||| |||||    
T  50936590 tttggtaaaaataagctataagctagctgaaagctgaaaaactagcttataactgatg 50936533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 4071533 - 4071481
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| |||||||||||| ||||||||| |||||||||| ||| ||| |||||    
T  4071533 ggtgtgtttggtaaaaatgagttataagctagctgatagctgataagctagct 4071481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 9558278 - 9558330
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| || ||||||| |||| |||||| |||||||||| |||||||||||||    
T  9558278 ggtgtgttcggtaaaattaagctataagctagctgatagctgaaaagttagct 9558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 19275925 - 19275885
Alignment:
Q  165 aaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||||||| |||||| |||||||||| |||||||||||||    
T  19275925 aaaaataagctataagctagctgatagctgaaaagttagct 19275885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 36659506 - 36659558
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagct 205  Q
    ||||| ||||||||||| ||| |||||| |||||||||| ||| |||||||||    
T  36659506 ggtgtgtttggtaaaaaaaagctataagctagctgatagctgataagttagct 36659558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 43358583 - 43358639
Alignment:
Q  153 ggtgtctttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||| ||||||||||||||| |||||| ||||||| || ||||||  |||||||||    
T  43358583 ggtgtgtttggtaaaaataagctataagctagctgaaagctgaaaaactagcttata 43358639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 70757 - 70807
Alignment:
Q  159 tttggtaaaaataagttataagttagctgatagttgaaaagttagcttata 209  Q
    ||||||||||||||| |||||| || |||| || |||||||||||||||||    
T  70757 tttggtaaaaataagctataagctaactgaaagctgaaaagttagcttata 70807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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