View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_7 (Length: 527)

Name: NF14649_low_7
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_7
NF14649_low_7
[»] chr1 (6 HSPs)
chr1 (24-365)||(31961313-31961655)
chr1 (23-121)||(39794340-39794438)
chr1 (23-121)||(26311958-26312056)
chr1 (463-502)||(31961235-31961274)
chr1 (406-440)||(9450974-9451008)
chr1 (389-432)||(31961271-31961315)
[»] chr8 (8 HSPs)
chr8 (215-440)||(2601653-2601884)
chr8 (23-121)||(201798-201896)
chr8 (23-121)||(316635-316733)
chr8 (38-124)||(17785959-17786045)
chr8 (23-121)||(30409917-30410015)
chr8 (23-121)||(43811597-43811695)
chr8 (23-104)||(1287079-1287160)
chr8 (23-121)||(41945761-41945859)
[»] chr6 (8 HSPs)
chr6 (23-117)||(21416720-21416814)
chr6 (23-121)||(8319618-8319716)
chr6 (24-121)||(17160038-17160135)
chr6 (23-121)||(14531419-14531517)
chr6 (23-121)||(27574316-27574414)
chr6 (23-124)||(23253995-23254096)
chr6 (307-440)||(33670526-33670665)
chr6 (38-121)||(17895351-17895434)
[»] chr4 (9 HSPs)
chr4 (23-121)||(43683293-43683391)
chr4 (23-121)||(27186584-27186682)
chr4 (23-121)||(44147503-44147601)
chr4 (23-117)||(31355128-31355222)
chr4 (23-121)||(53977274-53977372)
chr4 (294-373)||(53976969-53977049)
chr4 (29-102)||(20289966-20290039)
chr4 (125-198)||(20289852-20289924)
chr4 (125-197)||(53977175-53977247)
[»] chr2 (5 HSPs)
chr2 (23-121)||(17255730-17255828)
chr2 (23-121)||(8051337-8051435)
chr2 (23-121)||(36670996-36671094)
chr2 (23-121)||(13270642-13270740)
chr2 (23-120)||(25268698-25268795)
[»] scaffold0016 (1 HSPs)
scaffold0016 (38-121)||(112414-112497)
[»] chr7 (5 HSPs)
chr7 (23-121)||(7466154-7466252)
chr7 (23-121)||(7944197-7944295)
chr7 (23-121)||(27757342-27757440)
chr7 (38-121)||(7678436-7678519)
chr7 (269-392)||(22581029-22581156)
[»] chr5 (10 HSPs)
chr5 (23-121)||(7103488-7103586)
chr5 (23-121)||(16794614-16794712)
chr5 (23-121)||(30695741-30695839)
chr5 (23-121)||(12019234-12019332)
chr5 (23-121)||(37659172-37659270)
chr5 (23-121)||(40371361-40371459)
chr5 (23-121)||(10274982-10275080)
chr5 (23-121)||(16598444-16598542)
chr5 (51-119)||(15066949-15067017)
chr5 (57-117)||(30047798-30047858)
[»] chr3 (6 HSPs)
chr3 (23-121)||(756269-756367)
chr3 (23-121)||(9698026-9698124)
chr3 (23-121)||(21847573-21847671)
chr3 (23-121)||(54171458-54171556)
chr3 (23-121)||(43548162-43548260)
chr3 (28-124)||(22931416-22931512)
[»] scaffold0044 (1 HSPs)
scaffold0044 (23-121)||(48979-49077)
[»] scaffold0321 (1 HSPs)
scaffold0321 (406-439)||(13973-14006)
[»] scaffold0027 (1 HSPs)
scaffold0027 (52-121)||(54558-54627)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 31961655 - 31961313
Alignment:
Q  24 tgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatggct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||    
T  31961655 tgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaagatgagtgttgaaactattgctac--------gct 31961564  T
Q  124 ttaattgtgtaattgaagatttcttgctcccctagaacaaaacaaaaggctcgtgataccaatttgttagcgcagttcacaa----------gcactagg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||          | ||||||    
T  31961563 ttaattgtgtaattgaagatttcttgctcccctagaacaaaacaaaaggctcctaataccaatttgttagcgcagtttacaatgcttgttcagtactagg 31961464  T
Q  214 aaaatatgagaaaatagaaagaaaagagaatgagagttagagttatgtaaattatgatttcattaaattgtaaatcacacatacaaatgttcatatacaa 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31961463 aaaatatgagaaaataaaaagaaaagagaatgagagttagagttatgtaaattatgatttcattaaattgtaa-tcacacatacaaatgttcatatacaa 31961365  T
Q  314 aatgttgttgaattacttagaaacaagtcatctctgaaaccctaacaaccta 365  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31961364 aatgttgttgaattacttagaaacaagtcatctctcaaaccctaacaaccta 31961313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 39794438 - 39794340
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  39794438 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 39794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 26312056 - 26311958
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | ||||||||||| |||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  || ||||||||||||    
T  26312056 gtgctccaaacagattcttcatcactacactccatctttcccaattgcgtgcttcaagaattggaatatgtgtgttgaaactgctgttaccattcatgg 26311958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Complemental strand, 31961274 - 31961235
Alignment:
Q  463 ttaacaagtaacaataactacttagaaggtcttgacctag 502  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31961274 ttaacaagtaacaataactacttagaaggtcttgacctag 31961235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 440
Target Start/End: Complemental strand, 9451008 - 9450974
Alignment:
Q  406 aactatcttgattactatgtgatttaatcaaacaa 440  Q
    ||||| |||||||||||||||||||||||||||||    
T  9451008 aactaacttgattactatgtgatttaatcaaacaa 9450974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 31961315 - 31961271
Alignment:
Q  389 ctaattttcaacaaa-acaactatcttgattactatgtgatttaa 432  Q
    ||||||||||||||| | || ||||||||||||||||||||||||    
T  31961315 ctaattttcaacaaacaaaagtatcttgattactatgtgatttaa 31961271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 215 - 440
Target Start/End: Original strand, 2601653 - 2601884
Alignment:
Q  215 aaatatgagaaaatagaaagaaaa-gagaatgag-ag-ttagagttatgtaaattatgatttcattaaattgtaaatcacacatacaaatgttcatatac 311  Q
    |||||||||| ||||| ||||||| ||||| ||| || ||||||||||||||||| |||||||||||| || | ||||||||||||||||| | ||||||    
T  2601653 aaatatgagagaataggaagaaaaagagaacgaggagattagagttatgtaaattgtgatttcattaagttatgaatcacacatacaaatgcttatatac 2601752  T
Q  312 aaaatgttgttgaattact-tagaaacaagtcatctctgaaaccctaacaacctagtgct--aaactagaaaaaatttaactaattttcaacaaa-acaa 407  Q
    ||| ||||||||| || ||  ||||||||||||||||| ||||| |||||||||||||||  ||| ||| |||||| ||||||| |||||||||| | ||    
T  2601753 aaagtgttgttgagttgctcgagaaacaagtcatctctcaaaccttaacaacctagtgctaaaaattagcaaaaatgtaactaactttcaacaaacaaaa 2601852  T
Q  408 ctatcttgattactatgtgatttaatcaaacaa 440  Q
    ||| |||||||||||| ||| ||||||||||||    
T  2601853 ctaacttgattactatatga-ttaatcaaacaa 2601884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 201798 - 201896
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  201798 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 201896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 316635 - 316733
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  316635 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 316733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 17785959 - 17786045
Alignment:
Q  38 tcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatggctt 124  Q
    |||||||||||||||||| |||||||||||||  |||||||||| ||| || ||||||||| |||||| ||||| ||||||||||||    
T  17785959 tcttcatcactgcactccatctttcccaattttgtccttcaagaattggaagatgagtgttaaaactactgctatcattcatggctt 17786045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 30409917 - 30410015
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  30409917 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 30410015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 43811597 - 43811695
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  43811597 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 43811695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 1287160 - 1287079
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaact 104  Q
    |||||||||||| | ||||||||| || ||||| |||||||||||||||| || ||||| ||| || |||||||||||||||    
T  1287160 gtgctccaaacagattcttcatcattgtactccatctttcccaatttcttgctccaagaattggaagatgagtgttgaaact 1287079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 41945859 - 41945761
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    ||||| |||||| | |||||||||||||||||| |||||| ||||| | | |||||||| ||| || | | ||||||||| |  |||||||||||||||    
T  41945859 gtgcttcaaacatattcttcatcactgcactccatctttcacaattgcgtgcttcaagaattggaagacgtgtgttgaaattgctgctaccattcatgg 41945761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 21416720 - 21416814
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattc 117  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| ||||||||||||||||||||||||    
T  21416720 gtgctccaaacaaattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactattgctaccattc 21416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 8319618 - 8319716
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  8319618 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 8319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 17160135 - 17160038
Alignment:
Q  24 tgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    ||||| ||||||  ||||||||||| |||||| |||||||||||| | | |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  17160135 tgctcaaaacaagttcttcatcacttcactccatctttcccaattgcgtgcttcaagaattgaaagatgagtgttgaaactgatgctaccattcatgg 17160038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 14531419 - 14531517
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||  || ||| |||||||||||  |||||||||||||||    
T  14531419 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattagaagatgtgtgttgaaactgctgctaccattcatgg 14531517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 27574316 - 27574414
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| ||||| |||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  27574316 gtgctccaaacagattcttcatcactgcactccatcttttccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 27574414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 23254096 - 23253995
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatggc 122  Q
    |||||||||||| | |||||||||||||||| | | |||||||||||| ||||| |||| ||  |||||||||||||||| ||  |||| ||||||||||    
T  23254096 gtgctccaaacagattcttcatcactgcactacatgtttcccaatttcatcctttaagaattagaaaatgagtgttgaaattaccgctatcattcatggc 23253997  T
Q  123 tt 124  Q
    ||    
T  23253996 tt 23253995  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 440
Target Start/End: Complemental strand, 33670665 - 33670526
Alignment:
Q  307 tatacaaaatgttgttgaattactt-agaaacaagtcatctctgaaaccctaacaacctagtgctaaa--ctagaaaaaatttaactaattttc-aacaa 402  Q
    |||||||  ||||||||| || ||| ||||||||||||||||| ||||||||||||| || |||||||  |||| |||||| ||||||||||   |||||    
T  33670665 tatacaaggtgttgttgagttgcttgagaaacaagtcatctctcaaaccctaacaacataatgctaaaatctagcaaaaatgtaactaatttcataacaa 33670566  T
Q  403 a-acaactatcttgattactatgtgat-ttaatcaaacaa 440  Q
    | | ||||| ||||||||||||||||| |||| |||||||    
T  33670565 acaaaactaacttgattactatgtgatcttaaccaaacaa 33670526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 17895351 - 17895434
Alignment:
Q  38 tcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||| ||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  | |||||||||||||    
T  17895351 tcttcatcaccgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctactaccattcatgg 17895434  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 43683293 - 43683391
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| || || ||| |||||| |||||||| ||| || |||||||||||||||| |||||||||||||||    
T  43683293 gtgctccaaacagattcttcatcactgcactccatcatttccagtttcttgcttcaagaattggaagatgagtgttgaaactactgctaccattcatgg 43683391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 27186682 - 27186584
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||| | | |||||||||||||||||| |||||||||||| | | |||||||| |||||| ||| |||||||||||  |||||||||||||||    
T  27186682 gtgctccaaatagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattgaaagatgtgtgttgaaactgctgctaccattcatgg 27186584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 44147601 - 44147503
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  44147601 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 44147503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 31355222 - 31355128
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattc 117  Q
    |||||||||||  | ||||||||| |||| ||| ||||||||| |||||| |||||||| ||| || |||||||||||||||| |||||||||||    
T  31355222 gtgctccaaactgattcttcatcagtgcattccatctttcccagtttcttgcttcaagaattggaagatgagtgttgaaactactgctaccattc 31355128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 53977372 - 53977274
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||||  |||||||||||| ||| | | ||| |||||| | |||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  53977372 gtgctccaaacaagttcttcatcactggacttcatattttccaattgcatccttcaaaaattgaaagatgagggttgaaactattgctaccattcatgg 53977274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 53977049 - 53976969
Alignment:
Q  294 atacaaatgttcatatacaaaatgttgttgaattactt-agaaacaagtcatctctgaaaccctaacaacctagtgctaaa 373  Q
    ||||||||| | ||||||||  ||||||||| || | | ||||||||||||||||| |||||||||||||||| |||||||    
T  53977049 atacaaatgcttatatacaaggtgttgttgagttgcatgagaaacaagtcatctctcaaaccctaacaacctaatgctaaa 53976969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 20290039 - 20289966
Alignment:
Q  29 caaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaa 102  Q
    |||||| | ||||||||||  |||||| |||||||||||||||||| |||||| ||| || |||||| ||||||    
T  20290039 caaacagattcttcatcacaacactccatctttcccaatttcttccatcaagacttggaagatgagtattgaaa 20289966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 20289924 - 20289852
Alignment:
Q  125 taattgtgtaattgaagatttcttgctcccctagaacaaaacaaaaggctcgtgataccaatttgttagcgcag 198  Q
    ||||||||| ||||||| |||||||||||| ||||  | ||| | |||||| ||||||||||||||||| ||||    
T  20289924 taattgtgtgattgaagttttcttgctcccttagattagaaccagaggctc-tgataccaatttgttagtgcag 20289852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 53977247 - 53977175
Alignment:
Q  125 taattgtgtaattgaagatttcttgctcccctagaacaaaacaaaaggctcgtgataccaatttgttagcgca 197  Q
    ||||||||| ||||||||| |||| | ||| |||||| | || |||| ||| |||| ||||||||||||||||    
T  53977247 taattgtgtgattgaagatctctttcacccttagaacgataccaaagactcttgatgccaatttgttagcgca 53977175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 17255828 - 17255730
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| ||| |||||||| ||| || |||| ||||||||||| |||||||||||||||    
T  17255828 gtgctccaaacaagttcttcatcattgcactccatctttcccaattacttgcttcaagaattggaagatgactgttgaaactactgctaccattcatgg 17255730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 8051435 - 8051337
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  8051435 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 8051337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 36671094 - 36670996
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  36671094 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 36670996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 13270642 - 13270740
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | ||||||||| ||||| || |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  13270642 gtgctccaaacagattcttcatcattgcaccccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 13270740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 25268698 - 25268795
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatg 120  Q
    |||| ||||||| | ||||||||||  |||||| ||||||||||||||  ||||||||| ||| || |||||| |||||||| ||| |||||||||||    
T  25268698 gtgccccaaacagattcttcatcacaacactccatctttcccaatttccaccttcaagaattggaagatgagtattgaaactgttgttaccattcatg 25268795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 112497 - 112414
Alignment:
Q  38 tcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||||||||||||||||||| ||||||||||||    
T  112497 tcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgagtgttgaaactattgttaccattcatgg 112414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 7466154 - 7466252
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  7466154 gtgctccaaacaaattcttcatcactgtactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 7466252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 7944197 - 7944295
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  7944197 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 7944295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 27757440 - 27757342
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  27757440 gtgctccaaacagattcttcatcactgcactccatctttcccaattacgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 27757342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 7678436 - 7678519
Alignment:
Q  38 tcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    ||||||||||| |||||| |||||||||||| | | |||||||| ||| || |||||||||||||||| |||||||||||||||    
T  7678436 tcttcatcactacactccatctttcccaattgcgtgcttcaagaattggaagatgagtgttgaaactactgctaccattcatgg 7678519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 22581156 - 22581029
Alignment:
Q  269 gatttcattaaattgtaaatcacaca-tacaaatgttcatatacaaaatgttgttgaattactt-agaaacaagtcatctctgaaaccctaacaacctag 366  Q
    |||||||||||  ||| ||||||||| |||||||| | ||||||||  |||| |||| || ||| |||| |||||| ||||| ||||||||||||||||     
T  22581156 gatttcattaaggtgtgaatcacacaatacaaatgcttatatacaaggtgttattgagtttcttgagaagcaagtcctctctcaaaccctaacaacctaa 22581057  T
Q  367 tgctaaa--ctagaaaaaatttaactaa 392  Q
    || ||||  |||| |||||| |||||||    
T  22581056 tgataaaatctagcaaaaatgtaactaa 22581029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 7103488 - 7103586
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  7103488 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 7103586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 16794712 - 16794614
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  16794712 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 16794614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 30695839 - 30695741
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  30695839 gtgctccaaacagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 30695741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 12019332 - 12019234
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  12019332 gtgctccaaacagattcttcatcaccgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 12019234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 37659270 - 37659172
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  37659270 gtgctccaaacagattcttcatcaccgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 37659172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 40371361 - 40371459
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  40371361 gtgctccaaacagattcttcaccactgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 40371459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 10275080 - 10274982
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||| ||| ||| |||||||||||| | | |||||||| ||| || |||  ||||||||||  |||||||||||||||    
T  10275080 gtgctccaaacagattcttcatcaccgcattccatctttcccaattgcgtgcttcaagaattggaagatgtttgttgaaactgctgctaccattcatgg 10274982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 16598444 - 16598542
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||| ||||||| | ||||||||||  | |||| ||||||||||||||  ||||||||| ||| || |||||| |||||| |  |||||||||||||||    
T  16598444 gtgccccaaacatattcttcatcacatctctccatctttcccaatttccaccttcaagaattggaagatgagtattgaaaatgctgctaccattcatgg 16598542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 15066949 - 15067017
Alignment:
Q  51 actccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcat 119  Q
    ||||| ||||||||| ||||||||||||||| ||| || ||| || ||||||||  |||||||||||||    
T  15066949 actccatctttcccagtttcttccttcaagaattggaagatgtgtattgaaactgctgctaccattcat 15067017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 30047858 - 30047798
Alignment:
Q  57 tctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattc 117  Q
    ||||||||||||||  |||| |||||||| || |||||| |||||||||||  ||||||||    
T  30047858 tctttcccaatttccacctttaagatttggaagatgagtattgaaactattattaccattc 30047798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 756367 - 756269
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||| ||| |||||||||||||||||| |||||||||||| | |  ||||||| ||| || |||||||||||||||  |||||||||||||||    
T  756367 gtgctccaaagaaattcttcatcactgcactccatctttcccaattgcgtgattcaagaattggaagatgagtgttgaaactgctgctaccattcatgg 756269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 9698124 - 9698026
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||| | | |||||||||||||||||| |||||||||||| | | |||||||| |||||| ||| |||||||||||  |||||||||||||||    
T  9698124 gtgctccaaatagattcttcatcactgcactccatctttcccaattgcgtgcttcaagaattgaaagatgtgtgttgaaactgctgctaccattcatgg 9698026  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 21847671 - 21847573
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||| ||||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  21847671 gtgctccaaacagattcttcatcgctgcactccatctttcccaattacgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 21847573  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 54171458 - 54171556
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  54171458 gtgctccaaacagattcttcatcaccgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 54171556  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 43548260 - 43548162
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||||||||||| |||||||||||  | | | |||||| ||| || ||| |||||||||||  |||||||||||||||    
T  43548260 gtgctccaaacagattcttcatcactgcactccatctttcccaatggcgtgcctcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 43548162  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 22931416 - 22931512
Alignment:
Q  28 ccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatggctt 124  Q
    ||||||| | ||||||||||  ||||||  |||||||||||||  | ||||||  ||| || |||||| ||||||||  || |||||||||||||||    
T  22931416 ccaaacagattcttcatcacaacactccaactttcccaatttccactttcaagggttggaagatgagtattgaaactgctgttaccattcatggctt 22931512  T

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Target: scaffold0044 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 48979 - 49077
Alignment:
Q  23 gtgctccaaacaaactcttcatcactgcactccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||| | | |||||||| ||| || ||| |||||||||||  |||||||||||||||    
T  48979 gtgctccaaacagattcttcatcaccgcactccatctttcccaattgcgtgcttcaagaattggaagatgtgtgttgaaactgctgctaccattcatgg 49077  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Original strand, 13973 - 14006
Alignment:
Q  406 aactatcttgattactatgtgatttaatcaaaca 439  Q
    ||||| ||||||||||||||||||||||||||||    
T  13973 aactaacttgattactatgtgatttaatcaaaca 14006  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 54558 - 54627
Alignment:
Q  52 ctccttctttcccaatttcttccttcaagatttgaaaaatgagtgttgaaactattgctaccattcatgg 121  Q
    |||| ||||||||||||||  |||| |||| |||| | ||||||||||||||| ||| ||| ||||||||    
T  54558 ctccatctttcccaatttccaccttgaagaattgagagatgagtgttgaaactgttgttacgattcatgg 54627  T

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