View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_71 (Length: 225)

Name: NF14649_low_71
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_71
NF14649_low_71
[»] chr7 (14 HSPs)
chr7 (31-220)||(44182441-44182631)
chr7 (32-112)||(2610222-2610302)
chr7 (31-110)||(39153322-39153401)
chr7 (31-132)||(21387584-21387686)
chr7 (33-132)||(19688107-19688207)
chr7 (82-132)||(3967786-3967837)
chr7 (82-132)||(3106027-3106077)
chr7 (82-146)||(23818418-23818483)
chr7 (82-146)||(25774263-25774328)
chr7 (47-147)||(31417563-31417664)
chr7 (40-132)||(47708409-47708502)
chr7 (32-132)||(47712487-47712588)
chr7 (82-132)||(47718515-47718567)
chr7 (33-132)||(47534978-47535078)
[»] chr6 (10 HSPs)
chr6 (31-132)||(3203679-3203781)
chr6 (31-132)||(16120995-16121097)
chr6 (31-110)||(1158280-1158359)
chr6 (33-132)||(15517099-15517198)
chr6 (40-146)||(33689223-33689330)
chr6 (40-102)||(6686858-6686920)
chr6 (33-126)||(7158270-7158364)
chr6 (31-73)||(7649833-7649875)
chr6 (91-127)||(674140-674177)
chr6 (82-138)||(3203752-3203809)
[»] chr1 (25 HSPs)
chr1 (44-132)||(20273163-20273252)
chr1 (40-132)||(748688-748781)
chr1 (31-131)||(28038857-28038958)
chr1 (77-132)||(20423218-20423274)
chr1 (33-126)||(15351747-15351841)
chr1 (33-129)||(6735730-6735827)
chr1 (82-130)||(25554553-25554602)
chr1 (82-129)||(5246222-5246270)
chr1 (163-219)||(48632575-48632631)
chr1 (40-129)||(29043465-29043555)
chr1 (33-125)||(8984203-8984296)
chr1 (77-132)||(10015122-10015179)
chr1 (40-132)||(15057665-15057758)
chr1 (82-138)||(19175669-19175726)
chr1 (39-68)||(26760215-26760244)
chr1 (39-68)||(26924290-26924319)
chr1 (31-68)||(44939100-44939137)
chr1 (31-68)||(52112906-52112943)
chr1 (32-64)||(5040460-5040492)
chr1 (31-67)||(6156664-6156700)
chr1 (82-110)||(26760208-26760236)
chr1 (82-110)||(26924298-26924326)
chr1 (33-132)||(34953928-34954028)
chr1 (31-67)||(40802572-40802608)
chr1 (32-132)||(50105691-50105791)
[»] chr8 (14 HSPs)
chr8 (33-132)||(10934611-10934711)
chr8 (33-110)||(8793755-8793832)
chr8 (86-132)||(7351183-7351229)
chr8 (31-132)||(17871793-17871895)
chr8 (39-103)||(3236372-3236436)
chr8 (31-129)||(6189664-6189763)
chr8 (31-110)||(7693068-7693147)
chr8 (31-102)||(13841878-13841948)
chr8 (31-109)||(39910494-39910572)
chr8 (166-219)||(1226172-1226225)
chr8 (31-68)||(10184585-10184622)
chr8 (31-68)||(32575251-32575288)
chr8 (82-130)||(8688393-8688441)
chr8 (82-145)||(24052909-24052973)
[»] scaffold0325 (1 HSPs)
scaffold0325 (167-219)||(12996-13048)
[»] chr2 (15 HSPs)
chr2 (31-138)||(20218548-20218656)
chr2 (90-132)||(27243205-27243247)
chr2 (33-109)||(3123935-3124011)
chr2 (77-132)||(20218622-20218678)
chr2 (33-131)||(38181792-38181891)
chr2 (31-141)||(41824260-41824370)
chr2 (31-129)||(44587654-44587753)
chr2 (41-103)||(10222010-10222072)
chr2 (33-126)||(27881269-27881363)
chr2 (82-131)||(38871453-38871503)
chr2 (83-132)||(40363227-40363277)
chr2 (31-68)||(12486069-12486106)
chr2 (33-109)||(12242272-12242348)
chr2 (33-132)||(13333455-13333555)
chr2 (33-73)||(44089458-44089498)
[»] chr4 (13 HSPs)
chr4 (31-102)||(46462410-46462481)
chr4 (31-129)||(36491037-36491135)
chr4 (82-145)||(29006830-29006894)
chr4 (82-132)||(19934719-19934770)
chr4 (82-132)||(54164894-54164945)
chr4 (31-132)||(22235290-22235392)
chr4 (40-129)||(32645533-32645623)
chr4 (32-69)||(3094298-3094335)
chr4 (31-68)||(31089959-31089996)
chr4 (33-109)||(5656531-5656607)
chr4 (33-132)||(38382008-38382108)
chr4 (80-127)||(38562205-38562253)
chr4 (33-145)||(55935983-55936095)
[»] chr5 (9 HSPs)
chr5 (31-132)||(13391561-13391663)
chr5 (38-129)||(839283-839375)
chr5 (33-109)||(25408575-25408651)
chr5 (33-103)||(30780102-30780172)
chr5 (43-127)||(28499795-28499880)
chr5 (32-60)||(238807-238835)
chr5 (82-149)||(18652846-18652914)
chr5 (80-127)||(28351023-28351071)
chr5 (31-132)||(40100117-40100219)
[»] chr3 (9 HSPs)
chr3 (32-110)||(19649614-19649692)
chr3 (31-129)||(29241491-29241590)
chr3 (82-147)||(50603594-50603660)
chr3 (32-73)||(33068223-33068264)
chr3 (40-132)||(54273438-54273531)
chr3 (31-102)||(2544501-2544573)
chr3 (33-109)||(4980305-4980381)
chr3 (33-109)||(27707210-27707286)
chr3 (82-129)||(39964306-39964354)
[»] scaffold1266 (1 HSPs)
scaffold1266 (31-110)||(161-240)
[»] scaffold0263 (1 HSPs)
scaffold0263 (31-110)||(19823-19902)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 44182631 - 44182441
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattgttttttgcttataatag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44182631 ctttttatattcattgaataaatgatgtatttggtctacaataacgacttgatacatcatttattcaatgaatcaaaaaattgttttttgcttataatag 44182532  T
Q  131 tgtctggatgatgtattat-nnnnnnngttaagaacgttgtaatcaactttgatttttataacctcctaattgattaacttttctcaacat 220  Q
    || ||| ||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44182531 tgactgaatgatgtattataaaaaaaagttaagaacgttgtaattaactttgatttttataacctcctaattgattaacttttctcaacat 44182441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 2610222 - 2610302
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaatt 112  Q
    |||||| ||||||||| ||| |||||||||||||||| ||||   |||  ||||||||||||| |||||||| ||||||||    
T  2610222 tttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatcatttatgcaatgaattaaaaaatt 2610302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 39153401 - 39153322
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    |||||||  |||||||| ||| |||||||||||||||| ||||   |||  ||||||||||||| |||||||||||||||    
T  39153401 ctttttagcttcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaa 39153322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 21387686 - 21387584
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||| |||||||||||||| |||| || |||||  |||  |||||||||| ||| |||||||| | ||||| | |||||||||||| ||    
T  21387686 ctttttagattcatttaataaatgatgtatgtggtatataataaagactacatacatcattaattgaatgaatctagaaaatggatttttgcttatatta 21387587  T
Q  130 gtg 132  Q
    |||    
T  21387586 gtg 21387584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 19688207 - 19688107
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||| |||||||||||||| |||||||||  |  ||||  |||||||||||||| |||||| | ||||  |  ||||||||||||||||||    
T  19688207 ttttagattcatttaataaatgatgtatgtggtctacataataaactacatacatcatttattgaatgaacctaaaatgtatttttttgcttataatagt 19688108  T
Q  132 g 132  Q
    |    
T  19688107 g 19688107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 3967786 - 3967837
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtg 132  Q
    ||||||||||||||||||||| | ||||| | ||||||||||||||||||||    
T  3967786 atacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtg 3967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 3106027 - 3106077
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||| |||||| | |||| |||||||||| |||||||||||    
T  3106027 atacatcatttattgaatgaacctaaaagttgttttttgtttataatagtg 3106077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 23818483 - 23818418
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaa-ttgttttttgcttataatagtgtctggatgatgtat 146  Q
    |||||||||||| | |||||||| ||||  ||| |||||||||||||||||| ||||||| |||||    
T  23818483 atacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgactggatggtgtat 23818418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 25774263 - 25774328
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaattgt-tttttgcttataatagtgtctggatgatgtat 146  Q
    |||||||||||| | |||||||| ||||  ||| |||||||||||||||||| ||| |||||||||    
T  25774263 atacatcatttagtgaatgaatctaaaatgtgtatttttgcttataatagtgactgaatgatgtat 25774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 31417563 - 31417664
Alignment:
Q  47 aataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtgtctggatgatgta 145  Q
    |||||||||||||| | ||||||||||| ||    |||||||||||||| |||||||| |||| ||   |||||||||||| | ||| | ||||||||||    
T  31417563 aataaatgatgtatattgtctacaataaaaatcacatacatcatttattgaatgaatctaaaacatgaatttttgcttatatttgtgaccggatgatgta 31417662  T
Q  146 tt 147  Q
    ||    
T  31417663 tt 31417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 47708502 - 47708409
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatagtg 132  Q
    |||||| |||||||||||||| ||||||| | |||  ||   |||||||| | |||||||||| | ||||| | ||||||||||||||||||||    
T  47708502 ttcatttaataaatgatgtatgtggtctatattaatgacaacatacatcactcattcaatgaacttaaaaagtagttttttgcttataatagtg 47708409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 47712588 - 47712487
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatag 130  Q
    |||||| ||||||| |||||||||||||| |||| || | |||  ||  |||| |||| | |||||||||| |  |||||| ||||||||||||||||||    
T  47712588 tttttagattcatttaataaatgatgtatgtggtttatattaatgacaagatatatcactcattcaatgaacttcaaaaatagttttttgcttataatag 47712489  T
Q  131 tg 132  Q
    ||    
T  47712488 tg 47712487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 47718567 - 47718515
Alignment:
Q  82 atacatcatttattcaatgaatcaaa--aaattgttttttgcttataatagtg 132  Q
    |||||||| |||||||||||||| ||  ||||||||||||| |||||||||||    
T  47718567 atacatcagttattcaatgaatctaagaaaattgttttttgtttataatagtg 47718515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 47535078 - 47534978
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||| |||||||||||||| ||||| | | |||  ||  ||||||||| | ||| |||||| | ||||| | |||||||||||||||||||    
T  47535078 ttttagattcattcaataaatgatgtatgtggtccatattaatgacaagatacatcactcatttaatgaacttaaaaagtagttttttgcttataatagt 47534979  T
Q  132 g 132  Q
    |    
T  47534978 g 47534978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 3203781 - 3203679
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||||  |||||| |||||||||||||||||||| | ||||   ||| ||||||||||| ||| |||||| | ||||||||| |||||||||||||||    
T  3203781 ctttttaggttcatttaataaatgatgtatttggtcaagaatatagacttgatacatcattcattgaatgaacctaaaaaattgatttttgcttataata 3203682  T
Q  130 gtg 132  Q
    |||    
T  3203681 gtg 3203679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 16120995 - 16121097
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||| ||||||||||||| |||||||| | ||   ||   |||||||||||||| |||||||| ||||| ||| |||||||||||||||    
T  16120995 ctttttaaattcattcaataaatgatgtacttggtctatattattgaccaaatacatcatttatttaatgaatctaaaaagttgatttttgcttataata 16121094  T
Q  130 gtg 132  Q
    |||    
T  16121095 gtg 16121097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 1158359 - 1158280
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    ||||||| || |||||||||| |||||||||||||||| ||||   || | |||||| | |||||||||||||| |||||    
T  1158359 ctttttaaatacattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatctaaaaa 1158280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 15517198 - 15517099
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattgttttttgcttataatagtg 132  Q
    ||||| ||||||| | |||||||||||| ||||||| |||||  ||   |||||||||||| | |||||||| |||| |   ||||||||||||||||||    
T  15517198 ttttagattcattcattaaatgatgtatgtggtctataataaagacgatatacatcatttaatgaatgaatctaaaattatgtttttgcttataatagtg 15517099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 33689330 - 33689223
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa-attgttttttgcttataatagtgtctgga 138  Q
    |||||| | |||||||||||| | ||||| |||||  |||  |||||| ||| ||| |||||||  |||| |||| |||||||||||||||||| | |||    
T  33689330 ttcatttattaaatgatgtatgtagtctataataaatactatatacattattaattgaatgaatataaaatattgatttttgcttataatagtgaccgga 33689231  T
Q  139 tgatgtat 146  Q
    ||||||||    
T  33689230 tgatgtat 33689223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 6686920 - 6686858
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa 102  Q
    |||||||||||| | |||||||||| |||||||   ||||  |||||||||||||||||||||    
T  6686920 ttcattgaataattaatgtatttggactacaatgtaaactaaatacatcatttattcaatgaa 6686858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 7158364 - 7158270
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttata 126  Q
    ||||| ||||||| |||||||||||||| | |||||||||||  ||   |||||||||||||| ||| |||| |||| || | ||||||||||||    
T  7158364 ttttagattcattcaataaatgatgtatattgtctacaataaagaccacatacatcatttattgaataaatctaaaacatagatttttgcttata 7158270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 7649833 - 7649875
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaata 73  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||    
T  7649833 ctttttagattcattgaataattgatgtatttggtctaaaata 7649875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 674140 - 674177
Alignment:
Q  91 ttattcaatgaatc-aaaaaattgttttttgcttataa 127  Q
    |||||||||||||| |||||||||||||||||||||||    
T  674140 ttattcaatgaatctaaaaaattgttttttgcttataa 674177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 3203752 - 3203809
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaa-ttgttttttgcttataatagtgtctgga 138  Q
    |||||||||||||| |||||| | ||||| ||| |||||||||||||||||| |||||    
T  3203752 atacatcatttattaaatgaacctaaaaagttgatttttgcttataatagtgactgga 3203809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 20273163 - 20273252
Alignment:
Q  44 ttgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa-ttgttttttgcttataatagtg 132  Q
    |||| ||| |||||||| ||||||| | ||   ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  20273163 ttgagtaattgatgtatctggtctatattatagactggatacatcatttattcaatgaattaaaaaagttgttttttgcttataacagtg 20273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 748688 - 748781
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||||||||||  |||||| | |||    |  |||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  748688 ttcattgaataaatgatgtatacggtctatattaatggttacatacatcactcattcaatgaatctaaaaaattgttttttgcttataatagtg 748781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 28038857 - 28038958
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||| | |||||| ||||||||||| | ||||  ||||  |||||||||||| | |||||||| ||||| ||| |||||||||||||||    
T  28038857 ctttttagattcattcattaaatgttgtatttggtcaataatataaactaaatacatcatttaataaatgaatctaaaaagttgatttttgcttataata 28038956  T
Q  130 gt 131  Q
    ||    
T  28038957 gt 28038958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 20423218 - 20423274
Alignment:
Q  77 actggatacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||    
T  20423218 actggatacatcatttattcaatgaattcaaaaaaattttttttgcttataacagtg 20423274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 15351747 - 15351841
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttata 126  Q
    ||||| ||||||| |||||||||||||| | |||||||||||  ||   |||||||||||||| |||||||| |||| || | ||||||||||||    
T  15351747 ttttaaattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaacatagatttttgcttata 15351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 6735730 - 6735827
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||| ||||||||||||||| |||||| ||||||| ||||  |  || ||| |||||||||||||| |||| ||||| ||| |||||||||| ||||    
T  6735730 ttttagattcattgaataaataatgtatgtggtctataatataagatgcatatatcatttattcaataaatctaaaaagttgatttttgcttaaaata 6735827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 25554602 - 25554553
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatag 130  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  25554602 atacatcatttattcaatgaatctaaaaagttattttttgcttataatag 25554553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 5246222 - 5246270
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  5246222 atacatcatttattcaatgaatctaaaaaatagttttttgtttataata 5246270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 48632631 - 48632575
Alignment:
Q  163 aacgttgtaatcaactttgatttttataacctcctaattgattaacttttctcaaca 219  Q
    |||||||||||||||||| |||| ||||||| | |||||||| ||| ||||||||||    
T  48632631 aacgttgtaatcaactttaatttctataaccccgtaattgatcaacatttctcaaca 48632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 29043555 - 29043465
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||| |||||||||||||||||||| | ||||   |||  |||| ||||||||| |||||| | ||||| ||| |||||||||||||||    
T  29043555 ttcattcaataaatgatgtatttggtcaaaaatatagactaaatacgtcatttattgaatgaacctaaaaagttgatttttgcttataata 29043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 8984296 - 8984203
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttat 125  Q
    ||||| ||||||| |||||||||| ||| | |||||||||||  ||   |||||||||||||| |||||||| |||| ||  ||||||||||||    
T  8984296 ttttagattcattcaataaatgatttatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaacatgattttttgcttat 8984203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 10015179 - 10015122
Alignment:
Q  77 actggatacatcatttattcaatgaa-tcaaaaaatt-gttttttgcttataatagtg 132  Q
    |||||||||||||||||||||||||| ||||||| ||  |||||||||||||| ||||    
T  10015179 actggatacatcatttattcaatgaattcaaaaagttatttttttgcttataacagtg 10015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 15057758 - 15057665
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaatt-gttttttgcttataatagtg 132  Q
    |||||| ||||||| |||||| ||||||| | |||  ||   |||||||| | |||||||||||| ||||| | ||||||||||||||||||||    
T  15057758 ttcattaaataaattatgtatgtggtctatattaatgaccacatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagtg 15057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 19175669 - 19175726
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtgtctgga 138  Q
    |||||||||||||| |||||||| ||||| | | |||||||||||||||||| |||||    
T  19175669 atacatcatttattgaatgaatctaaaaagtagatttttgcttataatagtgactgga 19175726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 26760215 - 26760244
Alignment:
Q  39 attcattgaataaatgatgtatttggtcta 68  Q
    ||||||||||||||||||||||||||||||    
T  26760215 attcattgaataaatgatgtatttggtcta 26760244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 26924319 - 26924290
Alignment:
Q  39 attcattgaataaatgatgtatttggtcta 68  Q
    ||||||||||||||||||||||||||||||    
T  26924319 attcattgaataaatgatgtatttggtcta 26924290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 44939100 - 44939137
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  44939100 ctttttttattcattgtataaatgatgtatttggtcta 44939137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 52112906 - 52112943
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  52112906 ctttttatattcattcaataaatgatgtatgtggtcta 52112943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 5040460 - 5040492
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttgg 64  Q
    |||||||||||||| ||||||||||||||||||    
T  5040460 tttttatattcatttaataaatgatgtatttgg 5040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 6156664 - 6156700
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtct 67  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6156664 ctttttagattcattcaataaatgatgtatttggtct 6156700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 26760236 - 26760208
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaa 110  Q
    |||||||||||||||||||||||||||||    
T  26760236 atacatcatttattcaatgaatcaaaaaa 26760208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 26924298 - 26924326
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaa 110  Q
    |||||||||||||||||||||||||||||    
T  26924298 atacatcatttattcaatgaatcaaaaaa 26924326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 34953928 - 34954028
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||| | |||||||||||| ||||||| |||||  ||   |||||||||| ||| |||||||| |||| ||   |||||||||||||||||    
T  34953928 ttttaaattcattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatctaaaatataaatttttgcttataatagt 34954027  T
Q  132 g 132  Q
    |    
T  34954028 g 34954028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 40802608 - 40802572
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtct 67  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  40802608 ctttttatattcaatgaataattgatgtatttggtct 40802572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 50105691 - 50105791
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattgttttttgcttataatagt 131  Q
    |||||| |||||||||||||   |||||| || |||| ||||  |||| ||||||| | ||||  ||||||| |||||||| ||||||| ||| ||||||    
T  50105691 tttttagattcattgaataatcaatgtatctgatctataatataaactagatacattaattatctaatgaataaaaaaattattttttgtttaaaatagt 50105790  T
Q  132 g 132  Q
    |    
T  50105791 g 50105791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 10934711 - 10934611
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaat-caaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||| | |||||||||||| |||||||||||||  |||  |||||||||| ||| |||||||  |||| || |||||||||||||||||||    
T  10934711 ttttagattcattcattaaatgatgtatgtggtctacaataaagactacatacatcattaattaaatgaatgtaaaatatagttttttgcttataatagt 10934612  T
Q  132 g 132  Q
    |    
T  10934611 g 10934611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 8793755 - 8793832
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||   |||  ||||||||||||| |||||||||||||||    
T  8793755 ttttagattcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaa 8793832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 7351229 - 7351183
Alignment:
Q  86 atcatttattcaatgaatcaaaaaattgttttttgcttataatagtg 132  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||||    
T  7351229 atcatttattcaatgaagctaaaaattgttttttacttataatagtg 7351183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 17871793 - 17871895
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||||  |||||| | |||||||||||||||||| | ||||   |||  |||||||||||| | |||||| | ||||||||| |||||||||||||||    
T  17871793 ctttttaggttcattcattaaatgatgtatttggtcaataatatagactaaatacatcatttaatgaatgaacctaaaaaattgatttttgcttataata 17871892  T
Q  130 gtg 132  Q
    |||    
T  17871893 gtg 17871895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 3236436 - 3236372
Alignment:
Q  39 attcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaat 103  Q
    |||||||| ||||||||||||||||||||| | |   |||| ||||||||| |||||||||||||    
T  3236436 attcattgtataaatgatgtatttggtctaaattttaaactagatacatcaattattcaatgaat 3236372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 6189664 - 6189763
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||||  ||||| ||||||||||||||||||||| | ||||   |||  |||||||||||||| |||||||| ||||  ||| |||||| ||||||||    
T  6189664 ctttttaggttcatcgaataaatgatgtatttggtcaataatatagactaaatacatcatttattgaatgaatctaaaacgttgatttttgtttataata 6189763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 7693147 - 7693068
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    ||||||| ||||||||| ||| | ||||||||||| || ||||   |||  ||||||||||||| |||||||||||||||    
T  7693147 ctttttagattcattgagtaattaatgtatttggtataaaatatagactaaatacatcatttatgcaatgaatcaaaaaa 7693068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 13841878 - 13841948
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa 102  Q
    ||||||| ||||||| |||||||||||||||| |||||| |||  ||||  |||||||||||||| ||||||    
T  13841878 ctttttaaattcattcaataaatgatgtatttagtctac-atataaactacatacatcatttattgaatgaa 13841948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 39910494 - 39910572
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||| |  |||   |||||||||||||||||| ||| ||||    
T  39910494 ctttttagattcattgaataaataatgtatgtggtctataattaagactacgtacatcatttattcaatggatctaaaa 39910572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 1226172 - 1226225
Alignment:
Q  166 gttgtaatcaactttgatttttataacctcctaattgattaacttttctcaaca 219  Q
    ||||||||||||||| |||| ||||| |  ||||||||||||| ||||||||||    
T  1226172 gttgtaatcaactttaatttctataaacctctaattgattaacatttctcaaca 1226225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 10184585 - 10184622
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  10184585 ctttttttattcattgtataaatgatgtatttggtcta 10184622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 32575288 - 32575251
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  32575288 ctttttttattcattgaataattgatgtatttggtcta 32575251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 8688393 - 8688441
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaattgttttttgcttataatag 130  Q
    |||||||| ||||||||| |||| ||||| || ||||||||||||||||    
T  8688393 atacatcacttattcaataaatctaaaaaatgatttttgcttataatag 8688441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 24052909 - 24052973
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtgtctggatgatgta 145  Q
    ||||||||||||||||||||| | ||||| | | |||||| ||||||||||| | ||||||||||    
T  24052909 atacatcatttattcaatgaacctaaaaagtagatttttgtttataatagtgaccggatgatgta 24052973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 12996 - 13048
Alignment:
Q  167 ttgtaatcaactttgatttttataacctcctaattgattaacttttctcaaca 219  Q
    |||||||||||||| |||| |||||||||||||||||| ||| ||||||||||    
T  12996 ttgtaatcaactttaatttctataacctcctaattgatcaacgtttctcaaca 13048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 20218656 - 20218548
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattg-ttttttgcttataata 129  Q
    ||||||| ||||||||||||| ||||||||   ||||| ||||   |||| |||||||  |||||||||||| | ||||| || ||||||||||||||||    
T  20218656 ctttttagattcattgaataattgatgtatccagtctataatactgactgcatacatcggttattcaatgaaactaaaaagtgtttttttgcttataata 20218557  T
Q  130 gtgtctgga 138  Q
    ||| |||||    
T  20218556 gtgactgga 20218548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 27243205 - 27243247
Alignment:
Q  90 tttattcaatgaatcaaaaaattgttttttgcttataatagtg 132  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  27243205 tttattcaatgaatctaaaaatggttttttgcttataatagtg 27243247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 3123935 - 3124011
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||||||| |||||||||||||| | |||||||||||   ||  |||||||||||||| |||||||| ||||    
T  3123935 ttttagattcattcaataaatgatgtatgttgtctacaataaagtctacatacatcatttattgaatgaatctaaaa 3124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 20218622 - 20218678
Alignment:
Q  77 actggatacatcatttattcaatgaatcaaaaaattg-ttttttgcttataatagtg 132  Q
    ||||||||||||| |||||||||||||| ||||| || ||| |||||||||||||||    
T  20218622 actggatacatcaattattcaatgaatctaaaaagtgatttcttgcttataatagtg 20218678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 38181792 - 38181891
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaat-caaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||| | |||||||||||| || ||||||||||  |||  |||||||||| ||| |||||||  ||||  | |||||||||||||||||||    
T  38181792 ttttagattcattcattaaatgatgtatgtgatctacaataaagactatatacatcattaattgaatgaatgtaaaatgtagttttttgcttataatagt 38181891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 41824370 - 41824260
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||||  |||||| |||||||||||||| |||||||  |||  ||||  |||||| ||||||| |||||||| |||||||   |||||||||||||||    
T  41824370 ctttttaggttcattcaataaatgatgtatgtggtcta-tatataaactacatacataatttattgaatgaatctaaaaaatgaatttttgcttataata 41824272  T
Q  130 gtgtctggatga 141  Q
    |||  |||||||    
T  41824271 gtgattggatga 41824260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 44587753 - 44587654
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||||||| | |||||||| |||||  |||||   ||   ||||||||||||||||||||| | ||||||| || ||||||||||||||    
T  44587753 ctttttagattcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacctaaaaaatagtattttgcttataata 44587654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10222072 - 10222010
Alignment:
Q  41 tcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaat 103  Q
    ||||| |||||||||||||| | ||||||||||| |||   |||||||||||||| |||||||    
T  10222072 tcattcaataaatgatgtatattgtctacaataaaaacaacatacatcatttattgaatgaat 10222010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 27881269 - 27881363
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttata 126  Q
    ||||||||||||| |||||||||||||| | || ||||||||  ||   ||| |||||||||| |||||| | |||| |||| ||||||||||||    
T  27881269 ttttatattcattcaataaatgatgtatgttgtttacaataaataccacatatatcatttattgaatgaacctaaaacattgatttttgcttata 27881363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 38871503 - 38871453
Alignment:
Q  82 atacatcatttattcaatgaatcaa-aaaattgttttttgcttataatagt 131  Q
    |||||||||||||||||| |||  | |||||||||||||||||||||||||    
T  38871503 atacatcatttattcaataaatttagaaaattgttttttgcttataatagt 38871453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 40363277 - 40363227
Alignment:
Q  83 tacatcatttattcaatgaatcaaaaaatt-gttttttgcttataatagtg 132  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||||||    
T  40363277 tacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtg 40363227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 12486106 - 12486069
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  12486106 ctttttagattcattgaataattgatgtatttggtcta 12486069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 12242272 - 12242348
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||||||| |||||||||||||| |  ||||||||||  |||  |||||||||||| | |||||||| ||||    
T  12242272 ttttagattcattcaataaatgatgtatgttatctacaataaagactacatacatcatttaatgaatgaatctaaaa 12242348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 13333555 - 13333455
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||||| ||||||||||||  ||| || ||||  ||||  |||||||||||| | |||| ||| ||||  ||| |||||||||||||||||    
T  13333555 ttttagattcattgattaaatgatgtatgcggtttataatacaaactacatacatcatttaatgaatgtatctaaaacgttgatttttgcttataatagt 13333456  T
Q  132 g 132  Q
    |    
T  13333455 g 13333455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 44089458 - 44089498
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaata 73  Q
    |||||||||||||||||||||||||||  ||||||| ||||    
T  44089458 ttttatattcattgaataaatgatgtacatggtctataata 44089498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 46462410 - 46462481
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaa 102  Q
    ||||||| ||||||| |||||||||||||| |||| || |||||  |||  |||||||||||||||||||||    
T  46462410 ctttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaa 46462481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 36491135 - 36491037
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattgttttttgcttataata 129  Q
    ||||||| ||||| ||||||| |||||||| | ||| | ||||  |||| |||||||||  ||||||||||||  ||||| || |||||||||||||||    
T  36491135 ctttttaaattcagtgaataactgatgtatctagtcgataatataaactagatacatcaaatattcaatgaatgtaaaaaatgatttttgcttataata 36491037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 29006894 - 29006830
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtgtctggatgatgta 145  Q
    |||||||||||||| |||||||| ||||||| | |||||||||||||||||| | ||||| ||||    
T  29006894 atacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggatggtgta 29006830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 19934719 - 19934770
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||| |||||||| ||||||| | ||||||||||||||||||    
T  19934719 atacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtg 19934770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 54164894 - 54164945
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||| |||||||| ||||||| | ||||||||||||||||||    
T  54164894 atacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtg 54164945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 22235290 - 22235392
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattg-ttttttgcttataata 129  Q
    |||||||  ||| |||||||| |||| |||||| |||  ||||  |||  ||||||||| |||||||||||||| ||||  || ||||||||||||||||    
T  22235290 ctttttaggttctttgaataattgatatatttgatctttaatataaaccagatacatcagttattcaatgaatctaaaatgtgattttttgcttataata 22235389  T
Q  130 gtg 132  Q
    |||    
T  22235390 gtg 22235392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 32645533 - 32645623
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||||||||| |||||||||| |||||  |||   ||   |||||||| |||||||||||||| |||| ||| ||||||||||||||||    
T  32645533 ttcattgaataactgatgtatttagtctattatattgaccaaatacatcaattattcaatgaatctaaaacattattttttgcttataata 32645623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 3094298 - 3094335
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctac 69  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  3094298 tttttatattcattcaataaatgatgtatatggtctac 3094335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 31089996 - 31089959
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtcta 68  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  31089996 ctttttagattcattgaataaatgatgtatgtggtcta 31089959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 5656607 - 5656531
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||| ||| |||||||||||||| ||||||||| | | ||||  |||||||||| ||| |||||||| ||||    
T  5656607 ttttagattaattcaataaatgatgtatctggtctacattgagaactaaatacatcattaatttaatgaatctaaaa 5656531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 38382008 - 38382108
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagt 131  Q
    ||||| ||||||||| |||||||||||| |||| || ||||   |||  |||||||||||| | |||| ||| ||||  ||| |||||||||||||||||    
T  38382008 ttttagattcattgattaaatgatgtatgtggtttataatacagactacatacatcatttaatgaatgtatctaaaacgttgatttttgcttataatagt 38382107  T
Q  132 g 132  Q
    |    
T  38382108 g 38382108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 38562205 - 38562253
Alignment:
Q  80 ggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataa 127  Q
    |||||||| | |||||||||| ||| |||||||||||||||||||||||    
T  38562205 ggatacattaattattcaatgtatctaaaaaattgttttttgcttataa 38562253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 55936095 - 55935983
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaattgttttttgcttataatagtg 132  Q
    ||||| ||||||| | |||||||||||| ||||| | |||||  ||   |||||||||||| | |||||||| |||| |   ||||||||||||||||||    
T  55936095 ttttagattcattcattaaatgatgtatgtggtcgataataaagacgatatacatcatttaatgaatgaatctaaaattatgtttttgcttataatagtg 55935996  T
Q  133 tctggatgatgta 145  Q
     | ||| ||||||    
T  55935995 accggaggatgta 55935983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 13391561 - 13391663
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||   |||  |||||| ||||||| |||||| | ||||| ||| ||||||||||||| |    
T  13391561 ctttttagattcattcaataaatgatgtatttggtcaataatatagactaaatacataatttattgaatgaacctaaaaagttgatttttgcttataaca 13391660  T
Q  130 gtg 132  Q
    |||    
T  13391661 gtg 13391663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 839283 - 839375
Alignment:
Q  38 tattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatca-aaaaattgttttttgcttataata 129  Q
    |||||||| |||||||||||||| | || || |||||  ||||||||||||||| ||| ||||||||| |||  |  ||||||||||||||||    
T  839283 tattcatttaataaatgatgtatgtagtttataataaagactggatacatcattaattgaatgaatcataaatgtaattttttgcttataata 839375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 25408575 - 25408651
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||||||| |||||||||||||| | |||||||||||  ||   |||||||||||||| |||||||| ||||    
T  25408575 ttttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaa 25408651  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 30780102 - 30780172
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaat 103  Q
    ||||| ||| ||| |||||||||||||| | |||||||||||  || | |||||||||||||| |||||||    
T  30780102 ttttaaatttattcaataaatgatgtatgttgtctacaataaagaccgcatacatcatttattgaatgaat 30780172  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 28499880 - 28499795
Alignment:
Q  43 attgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataa 127  Q
    ||||||||| | ||||||||  |||| ||| |  || |||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  28499880 attgaataattaatgtatttaatctataattatgaccggatacattagttattcaatgaatctaaaaaattattttttgcttataa 28499795  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 238835 - 238807
Alignment:
Q  32 tttttatattcattgaataaatgatgtat 60  Q
    |||||||||||||||||||||||||||||    
T  238835 tttttatattcattgaataaatgatgtat 238807  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 18652846 - 18652914
Alignment:
Q  82 atacatcatttattcaatgaatcaaaaaa-ttgttttttgcttataatagtgtctggatgatgtattat 149  Q
    |||||||||||| | |||||||| ||||  ||| |||||| ||||||||||| ||||||| ||||||||    
T  18652846 atacatcatttaatgaatgaatctaaaatgttgatttttgtttataatagtgactggatgttgtattat 18652914  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 28351023 - 28351071
Alignment:
Q  80 ggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataa 127  Q
    |||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  28351023 ggatacattagttattcaatgaatctaaaaagttgttttttgcttataa 28351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 40100117 - 40100219
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc--aaaaaattgttttttgcttataat 128  Q
    ||||||| ||||||| |||||||||||| | |||||||  |||  ||||  |||||||||||| | ||||||||  |||||||   ||||||||||||||    
T  40100117 ctttttaaattcatttaataaatgatgtgtgtggtcta-tatatgaactacatacatcatttactgaatgaatctaaaaaaatgaatttttgcttataat 40100215  T
Q  129 agtg 132  Q
    ||||    
T  40100216 agtg 40100219  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 19649692 - 19649614
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    |||||| ||||||||| ||| ||||||||| |||||| ||||   |||  |||||||| ||||||||||||||||||||    
T  19649692 tttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaatcaaaaaa 19649614  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 29241590 - 29241491
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    ||||||| ||||||| |||||||||||||||||||||| | ||   |    || ||||||||||| |||||| | ||||||||| |||||||||||||||    
T  29241590 ctttttagattcattcaataaatgatgtatttggtctatattactgatcaaatgcatcatttattaaatgaacctaaaaaattgatttttgcttataata 29241491  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 50603594 - 50603660
Alignment:
Q  82 atacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatagtgtctggatgatgtatt 147  Q
    |||||||||||||| |||||| | ||||||| | |||||||||||||||||| | | ||||||||||    
T  50603594 atacatcatttattgaatgaacttaaaaaatagatttttgcttataatagtgaccgaatgatgtatt 50603660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 33068223 - 33068264
Alignment:
Q  32 tttttatattcattgaataaatgatgtatttggtctacaata 73  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  33068223 tttttatattcattgaatacataatgtatttggtctataata 33068264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 54273438 - 54273531
Alignment:
Q  40 ttcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatc-aaaaaattgttttttgcttataatagtg 132  Q
    |||||||||||||||||||||||||| || ||||  ||||  |||| |||||||||  ||||| | ||||  ||| ||||| ||||||||||||    
T  54273438 ttcattgaataaatgatgtatttggtatataatattaactaaatacgtcatttatttgatgaacctaaaatgttgatttttacttataatagtg 54273531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 2544573 - 2544501
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaa-taacaactggatacatcatttattcaatgaa 102  Q
    ||||||| |||||||| |||| |||||||||||||||| || | | |||  ||||||||| ||||||||||||    
T  2544573 ctttttagattcattgtataagtgatgtatttggtctataatttataacaagatacatcaattattcaatgaa 2544501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 4980305 - 4980381
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||||||| |||||||||| ||| | ||||| |||||  |||  |||||||||||||| |||||||| ||||    
T  4980305 ttttagattcattcaataaatgatatatgttgtctataataaagactacatacatcatttattgaatgaatctaaaa 4980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 27707210 - 27707286
Alignment:
Q  33 ttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaa 109  Q
    ||||| ||||||| |||||||||| ||| | |||||||||||  ||   |||||||||||||| |||||||| ||||    
T  27707210 ttttaaattcattcaataaatgatatatattgtctacaataaagaccacatacatcatttattgaatgaatctaaaa 27707286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 39964354 - 39964306
Alignment:
Q  82 atacatcatttattcaatgaatc-aaaaaattgttttttgcttataata 129  Q
    |||||| |||||||||||||||| ||||| | |||||||||||||||||    
T  39964354 atacataatttattcaatgaatctaaaaagtagttttttgcttataata 39964306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 240 - 161
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    ||||||| ||||||| |||||||||||||| ||||||| ||||  |||   |||||| ||||||| |||||||| |||||    
T  240 ctttttagattcattcaataaatgatgtatgtggtctataatatgaaccacatacataatttattaaatgaatctaaaaa 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 19823 - 19902
Alignment:
Q  31 ctttttatattcattgaataaatgatgtatttggtctacaataacaactggatacatcatttattcaatgaatcaaaaaa 110  Q
    ||||||| ||||||| |||||||||||||| ||||||| ||||  |||   |||||| ||||||| |||||||| |||||    
T  19823 ctttttagattcattaaataaatgatgtatgtggtctataatatgaaccacatacataatttattaaatgaatctaaaaa 19902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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