View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_73 (Length: 223)
Name: NF14649_low_73
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2568987 - 2568796
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568987 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2568888 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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| T |
2568887 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2568796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2592283 - 2592474
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592283 |
caaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2592382 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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| T |
2592383 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2592474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2440337 - 2440528
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440337 |
caaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2440436 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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| T |
2440437 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2440528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2596546 - 2596355
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596546 |
caaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2596447 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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| T |
2596446 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2596355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2623827 - 2624018
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2623827 |
caaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggatatgacacattgtgtggtgacagaggagttcaacttagtggtggtcaaaaaca |
2623926 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2623927 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2624018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2672362 - 2672171
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2672362 |
caaaggcttcaaatgctcatgattttatatcaagcttaaaagatggttatgatactttgtgtggtgacagaggagttcaacttagtggtggtcaaaaaca |
2672263 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2672262 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaat |
2672171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 2641202 - 2641011
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
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|
|||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2641202 |
caaaggctgcaaatgctcatgatttcatatcaagcttacaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2641103 |
T |
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| Q |
115 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
206 |
Q |
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||| ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2641102 |
aaggattgcaatagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
2641011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 2451061 - 2451248
Alignment:
| Q |
17 |
aaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaa |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
2451061 |
aaggctgcaaatgctcatgattttatatcaagcttaaaatatggttatgagacattgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaa |
2451160 |
T |
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| Q |
117 |
gaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaa |
204 |
Q |
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| T |
2451161 |
ggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaa |
2451248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 17870385 - 17870222
Alignment:
| Q |
28 |
tgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaata |
127 |
Q |
| |
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|||||||||||| || |||| || |||||||| ||||| |||| |||||| || | |||||| |||||| || || ||||||||||| || |||||| |
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| T |
17870385 |
tgctcatgatttcattgcaagtttgaaagatgggtatgagacatggtgtggggacaaaggagtgcaactttcaggggggcaaaaacaaaggatagcaata |
17870286 |
T |
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| Q |
128 |
gctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgata |
191 |
Q |
| |
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|||||||| || || ||||||||| | ||||||||| | ||||||||||||||||||||||||| |
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| T |
17870285 |
gctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgata |
17870222 |
T |
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