View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_75 (Length: 222)
Name: NF14649_low_75
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22474404 - 22474607
Alignment:
| Q |
1 |
ggtgcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22474404 |
ggtgcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccat |
22474503 |
T |
|
| Q |
101 |
ctgcaaggaatacctatgtgtgtccagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccttctgccacaaagaatggtaa |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22474504 |
ctgcaaggaatacctatgtgtgttgagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccttctgccacaaagaatggtaa |
22474603 |
T |
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| Q |
201 |
tagg |
204 |
Q |
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|||| |
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| T |
22474604 |
tagg |
22474607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 22474400 - 22474251
Alignment:
| Q |
30 |
accacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccatctgcaaggaatacctatgtgtgtccagtt |
129 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
22474400 |
accacgaacatcactgatgttctcaccaactcatcaacggcctacttggagtgatgatttccctaaaccaactgcaaggaatatcaatgtgtgtccagtt |
22474301 |
T |
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| Q |
130 |
aaagtttctcaaccgacacatattccaattactcatgttccaaatccacc |
179 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
22474300 |
aaagtttcccaaccaacacatattctaattactcatgttccgaatccacc |
22474251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 19213183 - 19213011
Alignment:
| Q |
4 |
gcatatggaataccattttcatcacaaccacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccatctg |
103 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||| || |
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| T |
19213183 |
gcatctggaataccattttcatcaccaccacgaacatcacggatgttctcaccagctcaccaagggcctacttggagccatgatttccccaa-------- |
19213092 |
T |
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| Q |
104 |
caaggaatacctatgtgtgtccagttaaagtttctcaaccgacacatattccaattactcatgttccaaatccaccttctgccacaaa |
191 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19213091 |
-------taccaatgtgtgtccggttcaagtttctcaaccgacacatattccaactactcatgttccaaatccaccttctgccacaaa |
19213011 |
T |
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