View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_77 (Length: 221)
Name: NF14649_low_77
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 44001610 - 44001434
Alignment:
| Q |
10 |
tcatcaaacataacaccatttgcaaagatgcacaaacaatcattaaacacccccaaggtccaagagttcttctcaaaatcaggcagcaaaagctgttgat |
109 |
Q |
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| T |
44001610 |
tcataaaacataacaccatttgcaaagatgcacaaacaatcattaaacacccccaaggtccaagacttcttctcaaaatcaggcagcgaaagctgttgat |
44001511 |
T |
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| Q |
110 |
atgactccttttcaagatcaagagaaacaatgtcacagaaagtagcgctacttgaaaaatcagatgccaaccaatta |
186 |
Q |
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| T |
44001510 |
atgactccttttcaagatcaagagaaacaatgtcacagaaagtagcgctactcgaaaaatcagatgccaaccaatta |
44001434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 2492008 - 2491951
Alignment:
| Q |
79 |
ttctcaaaatcaggcagcaaaagctgttgatatgactccttttcaagatcaagagaaa |
136 |
Q |
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| T |
2492008 |
ttctcaaaatcaggtaggaaaagttgttgatatgactccttctctaaatcaagagaaa |
2491951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 13526580 - 13526474
Alignment:
| Q |
30 |
tgcaaagatgcacaaacaatcattaaacacccccaaggtccaagagttcttctcaaaatcaggcagcaaaagctgttgatatgactccttttcaagatca |
129 |
Q |
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| T |
13526580 |
tgcaaatatggacaagcaatccttcaacacccccaaagtccaacaatttgtctcaacattagggtgcgaaagcttttgatacgattccttttcaaaatca |
13526481 |
T |
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| Q |
130 |
agagaaa |
136 |
Q |
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| T |
13526480 |
agagaaa |
13526474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33020243 - 33020175
Alignment:
| Q |
78 |
cttctcaaaatcaggcagcaaaagctgttgatatgactccttttcaagatcaagagaaacaatgtcaca |
146 |
Q |
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| T |
33020243 |
cttctcgaaatcaggcagcaaaaacgtttgatacgactccttctccaaatcaagagaaacaatgacaca |
33020175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 33026584 - 33026515
Alignment:
| Q |
78 |
cttctcaaaatcaggcagcaaaagctgttgatatgactccttttcaagatcaagagaaacaatgtcacag |
147 |
Q |
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|||||||||||| |||||| ||||| |||||| ||||||| || | |||||||||||||||| ||||| |
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| T |
33026584 |
cttctcaaaatctggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatgacacag |
33026515 |
T |
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