View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_79 (Length: 220)
Name: NF14649_low_79
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_79 |
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| [»] chr6 (8 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2440360 - 2440141
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
2440360 |
aatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccatatacaatattttctcttatggtaccacc |
2440261 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440260 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
2440161 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2440160 |
agtggatcatagaatctctc |
2440141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2568964 - 2569180
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
2568964 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccact |
2569063 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||| |
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| T |
2569064 |
aaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatcccttta |
2569163 |
T |
|
| Q |
201 |
agtggatcatagaatct |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
2569164 |
agtggatcatagaatct |
2569180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2596523 - 2596742
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||| |
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| T |
2596523 |
aatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccatatacaatattttcttttatggtaccacc |
2596622 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||| |||||||||||||||| |
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|
| T |
2596623 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatcccttta |
2596722 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
2596723 |
aatggatcatagaatctctc |
2596742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2623850 - 2623631
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | || | ||||||| ||||||||||| ||||||||||||| |
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|
| T |
2623850 |
aatcatgagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccacc |
2623751 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| | |
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|
| T |
2623750 |
aaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttca |
2623651 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
2623650 |
agtggatcatagaacctctc |
2623631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2592306 - 2592087
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||| ||||||||||| | |||||||||| |
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|
| T |
2592306 |
aatcatgagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccact |
2592207 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||| |||||||||| |||||||||||||||| |
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|
| T |
2592206 |
aaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatcccttta |
2592107 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
2592106 |
agtggatcatagaacctctc |
2592087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2672339 - 2672558
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
2672339 |
aatcatgagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccact |
2672438 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2672439 |
aaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatcccttta |
2672538 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
2672539 |
agtgggtcatagaatctctc |
2672558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2641179 - 2641398
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
2641179 |
aatcatgagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcataggctccgtatgcaatattttcccttatggtaccacc |
2641278 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
2641279 |
aaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatcccttta |
2641378 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
2641379 |
attggatcatagaatctctc |
2641398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2451082 - 2450866
Alignment:
| Q |
1 |
aatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatacaatattttctcttatggtaccacc |
100 |
Q |
| |
|
||||||||||| |||||||||| | ||| |||||||| |||||||||||||||||||||| | ||||||||| ||||||| || |||||||||||||| |
|
|
| T |
2451082 |
aatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgctccatatgcaatattctcccttatggtaccacc |
2450986 |
T |
|
| Q |
101 |
aaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagtttttatgtctctaccatcaactgtcactatcccttta |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| ||||| || |||||||||| |||||||||||||| |
|
|
| T |
2450985 |
aaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatccctttt |
2450886 |
T |
|
| Q |
201 |
agtggatcatagaatctctc |
220 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
2450885 |
attggatcataaaatctctc |
2450866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 17870445 - 17870597
Alignment:
| Q |
68 |
tccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttttt |
167 |
Q |
| |
|
||||||| |||| || ||||||||||| ||| | ||||||||||||||| ||||||||||| || ||||| |||| ||| | ||| ||||| | |||| |
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|
| T |
17870445 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttt |
17870544 |
T |
|
| Q |
168 |
atgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctc |
220 |
Q |
| |
|
|||| | ||||||| | |||||| | ||||| | |||||||||||||||||| |
|
|
| T |
17870545 |
atgtttgtaccatctattgtcacatttccttttattggatcatagaatctctc |
17870597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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