View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_81 (Length: 210)

Name: NF14649_low_81
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_81
NF14649_low_81
[»] chr2 (17 HSPs)
chr2 (68-192)||(28324563-28324687)
chr2 (14-67)||(35584618-35584671)
chr2 (14-73)||(1060955-1061014)
chr2 (14-67)||(1066344-1066397)
chr2 (13-67)||(20964134-20964188)
chr2 (13-67)||(30197346-30197400)
chr2 (19-67)||(4072366-4072414)
chr2 (11-67)||(21121332-21121388)
chr2 (14-67)||(21604071-21604125)
chr2 (14-67)||(33354-33407)
chr2 (19-68)||(27036552-27036601)
chr2 (19-67)||(4076722-4076770)
chr2 (19-67)||(11361078-11361126)
chr2 (19-67)||(24427618-24427666)
chr2 (19-67)||(28926762-28926810)
chr2 (19-67)||(36985366-36985414)
chr2 (19-67)||(42552465-42552513)
[»] chr1 (16 HSPs)
chr1 (68-192)||(49922209-49922333)
chr1 (14-68)||(33684978-33685032)
chr1 (19-67)||(24065573-24065621)
chr1 (19-67)||(26739887-26739935)
chr1 (14-68)||(18417426-18417480)
chr1 (13-67)||(24423302-24423356)
chr1 (13-67)||(39093570-39093624)
chr1 (19-69)||(52399548-52399598)
chr1 (14-67)||(6739819-6739872)
chr1 (14-67)||(17378720-17378772)
chr1 (14-67)||(29152134-29152187)
chr1 (19-67)||(3653465-3653513)
chr1 (19-67)||(11385244-11385292)
chr1 (13-69)||(28557259-28557315)
chr1 (19-67)||(39190475-39190523)
chr1 (19-67)||(48427162-48427210)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-67)||(49262-49315)
[»] chr7 (17 HSPs)
chr7 (14-67)||(40923780-40923833)
chr7 (14-67)||(2027041-2027094)
chr7 (14-67)||(12404776-12404829)
chr7 (14-67)||(26090761-26090814)
chr7 (14-68)||(46649089-46649143)
chr7 (14-67)||(13964801-13964854)
chr7 (19-67)||(11300463-11300511)
chr7 (19-69)||(48988745-48988795)
chr7 (14-67)||(5188109-5188161)
chr7 (14-67)||(15630779-15630832)
chr7 (14-67)||(30603633-30603686)
chr7 (14-67)||(37284512-37284565)
chr7 (19-67)||(749152-749200)
chr7 (19-67)||(2280359-2280407)
chr7 (19-67)||(11878369-11878417)
chr7 (19-67)||(25157775-25157823)
chr7 (19-67)||(40685579-40685627)
[»] chr8 (23 HSPs)
chr8 (14-69)||(13362729-13362784)
chr8 (14-68)||(4521547-4521601)
chr8 (14-67)||(35033148-35033201)
chr8 (13-67)||(14765060-14765114)
chr8 (19-67)||(213299-213347)
chr8 (19-67)||(238907-238955)
chr8 (19-67)||(726922-726970)
chr8 (19-67)||(752645-752693)
chr8 (19-67)||(792262-792310)
chr8 (19-67)||(799423-799471)
chr8 (19-67)||(850816-850864)
chr8 (19-67)||(14562913-14562961)
chr8 (14-69)||(23225520-23225575)
chr8 (14-69)||(33828638-33828692)
chr8 (13-67)||(41242931-41242985)
chr8 (14-67)||(4979632-4979685)
chr8 (39-68)||(27910386-27910415)
chr8 (39-68)||(27956805-27956834)
chr8 (19-67)||(23116517-23116565)
chr8 (19-67)||(28979999-28980047)
chr8 (19-67)||(28985219-28985267)
chr8 (19-67)||(33799183-33799231)
chr8 (19-67)||(37879144-37879192)
[»] chr5 (20 HSPs)
chr5 (14-69)||(11994393-11994448)
chr5 (14-67)||(14615747-14615800)
chr5 (14-67)||(22249030-22249083)
chr5 (13-67)||(25845595-25845649)
chr5 (13-67)||(25852230-25852284)
chr5 (14-67)||(17939725-17939778)
chr5 (14-67)||(30780319-30780372)
chr5 (13-69)||(37548363-37548419)
chr5 (13-67)||(37540819-37540873)
chr5 (19-68)||(19801134-19801183)
chr5 (14-67)||(20339846-20339899)
chr5 (14-67)||(20346440-20346493)
chr5 (19-67)||(5583088-5583136)
chr5 (19-67)||(14883154-14883202)
chr5 (19-67)||(14889831-14889879)
chr5 (19-67)||(18895805-18895853)
chr5 (19-67)||(24795854-24795902)
chr5 (19-67)||(24801221-24801269)
chr5 (19-67)||(40011782-40011830)
chr5 (41-69)||(43028290-43028318)
[»] chr6 (15 HSPs)
chr6 (14-68)||(25463133-25463187)
chr6 (14-67)||(7238134-7238187)
chr6 (14-67)||(15298921-15298974)
chr6 (14-67)||(17308978-17309031)
chr6 (14-67)||(34134730-34134783)
chr6 (13-67)||(1069914-1069968)
chr6 (14-67)||(21897084-21897137)
chr6 (13-67)||(21966416-21966470)
chr6 (13-67)||(30800224-30800278)
chr6 (14-67)||(15332914-15332966)
chr6 (14-67)||(16224462-16224515)
chr6 (19-67)||(11582906-11582954)
chr6 (19-67)||(19097497-19097545)
chr6 (13-69)||(21965724-21965780)
chr6 (19-67)||(33874089-33874137)
[»] scaffold0606 (1 HSPs)
scaffold0606 (14-67)||(434-487)
[»] chr4 (8 HSPs)
chr4 (14-67)||(15471381-15471434)
chr4 (13-68)||(35149922-35149977)
chr4 (14-67)||(1583159-1583212)
chr4 (14-67)||(23436762-23436815)
chr4 (19-67)||(390375-390423)
chr4 (19-67)||(3260775-3260823)
chr4 (19-67)||(17667328-17667376)
chr4 (13-69)||(29383538-29383594)
[»] chr3 (15 HSPs)
chr3 (14-67)||(50656841-50656894)
chr3 (14-67)||(51854585-51854638)
chr3 (13-67)||(51848448-51848502)
chr3 (13-67)||(53572101-53572155)
chr3 (13-69)||(29492775-29492831)
chr3 (13-67)||(21351502-21351556)
chr3 (13-67)||(54833997-54834051)
chr3 (14-67)||(3554511-3554563)
chr3 (19-67)||(10767039-10767088)
chr3 (39-67)||(3107723-3107751)
chr3 (19-67)||(3783598-3783646)
chr3 (19-67)||(9772710-9772758)
chr3 (19-67)||(17596032-17596080)
chr3 (19-67)||(28752024-28752072)
chr3 (19-67)||(28758191-28758239)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-67)||(63950-64004)
[»] scaffold0560 (1 HSPs)
scaffold0560 (14-70)||(1811-1867)
[»] scaffold0466 (1 HSPs)
scaffold0466 (13-67)||(10507-10561)
[»] scaffold0126 (1 HSPs)
scaffold0126 (19-68)||(31109-31158)
[»] scaffold0102 (1 HSPs)
scaffold0102 (14-67)||(12993-13046)
[»] scaffold0088 (1 HSPs)
scaffold0088 (14-67)||(31183-31236)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 28324687 - 28324563
Alignment:
Q  68 ttcagcaccgcggtatgcttcattctgcctcttgtccaaggtgtcctatggaaaatgagaatattatgcattgtttccgggactgcgtttttgccaggca 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28324687 ttcagcaccgcggtatgcttcattctgcctcttgtccaaggtgtcctatggaaaatgagaatattatgcattgtttccgggactgcgtttttgccaggca 28324588  T
Q  168 gttatggttgtctcttggatttgat 192  Q
    |||||||||||||||||||||||||    
T  28324587 gttatggttgtctcttggatttgat 28324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 35584671 - 35584618
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  35584671 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 35584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 1061014 - 1060955
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacattcagc 73  Q
    |||| |||||||| | |||||||| ||||||||||||||||||||||||||||| |||||    
T  1061014 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttacagtcagc 1060955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1066397 - 1066344
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||||||||    
T  1066397 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 1066344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 20964188 - 20964134
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  20964188 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 20964134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 30197346 - 30197400
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  30197346 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 30197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4072366 - 4072414
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  4072366 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 4072414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 21121388 - 21121332
Alignment:
Q  11 tagattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||||| ||||||||||  ||||||| | |||||||||| ||||||||||||||||    
T  21121388 tagattactctgatgtataaatgttatttaattgcttttgagtaacggggtgttaca 21121332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 21604125 - 21604071
Alignment:
Q  14 attattctgatgtatttatgttatgttattgctttt-gggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| ||||||||||| ||||||||||||||||||    
T  21604125 attactctgatgtttatatgttattttattgcttttggggtaacggggtgttaca 21604071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 33407 - 33354
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  33407 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 33354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 27036601 - 27036552
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||||||||| | |||||| | ||| ||||||||||||||||||||||||    
T  27036601 tctgatgtatatttgttatttaattacttttgggtaacggggtgttacat 27036552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4076770 - 4076722
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  4076770 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 4076722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11361078 - 11361126
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  11361078 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 11361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24427618 - 24427666
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | |||||| | ||| |||||||||||||||||||||||    
T  24427618 tctgatgtatatttgttatttaattacttttgggtaacggggtgttaca 24427666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28926810 - 28926762
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  28926810 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 28926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 36985366 - 36985414
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  36985366 tctgatgtttgtatgctatttaattgcttttgggtaacggggtgttaca 36985414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 42552513 - 42552465
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  42552513 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 42552465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 49922333 - 49922209
Alignment:
Q  68 ttcagcaccgcggtatgcttcattctgcctcttgtccaaggtgtcctatggaaaatgagaatattatgcattgtttccgggactgcgtttttgccaggca 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49922333 ttcagcaccgcggtatgcttcattctgcctcttgtccaaggtgtcctatggaaaatgagaatattatgcattgtttccgggactgcgtttttgccaggca 49922234  T
Q  168 gttatggttgtctcttggatttgat 192  Q
    |||||||||||||||||||||||||    
T  49922233 gttatggttgtctcttggatttgat 49922209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 33684978 - 33685032
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  33684978 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttacat 33685032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 24065621 - 24065573
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  24065621 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 24065573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 26739887 - 26739935
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  26739887 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 26739935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 18417480 - 18417426
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||| |||||||||| | || ||| | ||||||||||||||||||||||||||||    
T  18417480 attactctgatgtatatttgctatttaattgcttttgggtaacggggtgttacat 18417426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 24423356 - 24423302
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||  ||||||| | |||| ||||||||||||||||||||||    
T  24423356 gattactctgatgtataaatgttatttaattgtttttgggtaacggggtgttaca 24423302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 39093624 - 39093570
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| ||||||||||||||||||| |||||||||    
T  39093624 gattactctgatgtttatatgctattttattgcttttgggtaacgaggtgttaca 39093570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 52399598 - 52399548
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||||||| | |||| ||| |||||| ||||||||||||||||||||||||    
T  52399598 tctgatgtttatatgctattttattgtttttgggtaacggggtgttacatt 52399548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 6739872 - 6739819
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  6739872 attactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 6739819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 17378772 - 17378720
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||| ||||||||||||||||||    
T  17378772 attactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 17378720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 29152134 - 29152187
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  29152134 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 29152187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 3653465 - 3653513
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  3653465 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 3653513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 11385292 - 11385244
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  11385292 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 11385244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 28557259 - 28557315
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    ||||| || |||||||  ||||||| | ||||||||| |||||||||||||||||||    
T  28557259 gattactcagatgtataaatgttatttaattgcttttaggtaacggggtgttacatt 28557315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39190475 - 39190523
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  39190475 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 39190523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 48427210 - 48427162
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  48427210 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 48427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 49315 - 49262
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  49315 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 49262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 40923780 - 40923833
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  40923780 attactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 40923833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2027041 - 2027094
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  2027041 attactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 2027094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 12404776 - 12404829
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  12404776 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 12404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 26090761 - 26090814
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  26090761 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 26090814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 46649143 - 46649089
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||| |||||||||| | |||||| | ||||||||||||||||||||||||||||    
T  46649143 attactctgatgtatatctgttatttaattgcttttgggtaacggggtgttacat 46649089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 13964801 - 13964854
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| | |||||| | |||||||||||||||||||||||||||    
T  13964801 attactctgatgtatatttgttatttaattgcttttgggtaacggggtgttaca 13964854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11300463 - 11300511
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  11300463 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 11300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 48988745 - 48988795
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||||    
T  48988745 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttacatt 48988795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 5188109 - 5188161
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||| ||||||||||||||||||    
T  5188109 attactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 5188161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 15630832 - 15630779
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  15630832 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 15630779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 30603633 - 30603686
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  30603633 attactctgatgtatgtttgctatttaattgcttttgggtaacggggtgttaca 30603686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 37284565 - 37284512
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  37284565 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 37284512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 749200 - 749152
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  749200 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 749152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 2280407 - 2280359
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  2280407 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 2280359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 11878417 - 11878369
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  11878417 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 11878369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 25157823 - 25157775
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | |||||| | ||| |||||||||||||||||||||||    
T  25157823 tctgatgtatgtttgttatttaattacttttgggtaacggggtgttaca 25157775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40685579 - 40685627
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  40685579 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 40685627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 13362729 - 13362784
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  13362729 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttacatt 13362784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 4521547 - 4521601
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  4521547 attactctgatgtatttatgttattttactgcttatgggtaacggggtgttacat 4521601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 35033201 - 35033148
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  35033201 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 35033148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 14765114 - 14765060
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  14765114 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14765060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 213347 - 213299
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  213347 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 213299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 238907 - 238955
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  238907 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 726970 - 726922
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  726970 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 726922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 752645 - 752693
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  752645 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 752693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 792262 - 792310
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  792262 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 792310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 799471 - 799423
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  799471 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 799423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 850864 - 850816
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||||| | |||||||||||||||||||||||||||||    
T  850864 tctgatgtttatatgttgttttattgcttttgggtaacggggtgttaca 850816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 14562961 - 14562913
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  14562961 tctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14562913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 23225520 - 23225575
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||| ||||||||||   |||||| | |||||||||||||||||||||||||||||    
T  23225520 attactctgatgtataattgttatttaattgcttttgggtaacggggtgttacatt 23225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 33828692 - 33828638
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||| ||||||||||||||| ||| ||| || ||||||||||||||||||||||||    
T  33828692 attactctgatgtatttatgctattttactg-ttttgggtaacggggtgttacatt 33828638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 41242931 - 41242985
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||||   ||||||| | |||||||||||||||||||||||||||    
T  41242931 gattactctgatgtaaaaatgttatttaattgcttttgggtaacggggtgttaca 41242985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 4979685 - 4979632
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||  ||| ||||||||||||||||||| |||||||||    
T  4979685 attactctgatgtatatattctattttattgcttttgggtaacgaggtgttaca 4979632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 27910386 - 27910415
Alignment:
Q  39 ttattgcttttgggtaacggggtgttacat 68  Q
    ||||||||||||||||||||||||||||||    
T  27910386 ttattgcttttgggtaacggggtgttacat 27910415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 27956805 - 27956834
Alignment:
Q  39 ttattgcttttgggtaacggggtgttacat 68  Q
    ||||||||||||||||||||||||||||||    
T  27956805 ttattgcttttgggtaacggggtgttacat 27956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 23116565 - 23116517
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | |||||| | ||| |||||||||||||||||||||||    
T  23116565 tctgatgtatatttgttatttaattacttttgggtaacggggtgttaca 23116517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28980047 - 28979999
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  28980047 tctgatgtttatatgctattttattacttttgggtaacggggtgttaca 28979999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28985267 - 28985219
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  28985267 tctgatgtttatatgctattttattacttttgggtaacggggtgttaca 28985219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 33799183 - 33799231
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  33799183 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 33799231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 37879192 - 37879144
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  37879192 tctgatgtttatatgctattttatttcttttgggtaacggggtgttaca 37879144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11994448 - 11994393
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  11994448 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttacatt 11994393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 14615747 - 14615800
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  14615747 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 14615800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 22249030 - 22249083
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  22249030 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 22249083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 25845649 - 25845595
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  25845649 gattactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 25845595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 25852284 - 25852230
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  25852284 gattactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 25852230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 17939725 - 17939778
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| ||||| |||||||||||||||||||    
T  17939725 attactctgatgtatttatgctattttactgcttatgggtaacggggtgttaca 17939778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 30780372 - 30780319
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||| ||| | |||||||||||||||||||||||||||    
T  30780372 attactctgatgtatatatgctatttaattgcttttgggtaacggggtgttaca 30780319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 37548363 - 37548419
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    ||||| |||||||| | |||| ||| | |||||||||||||||||||||||||||||    
T  37548363 gattactctgatgtttatatgctatttaattgcttttgggtaacggggtgttacatt 37548419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 37540819 - 37540873
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  37540819 gattactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 37540873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 19801134 - 19801183
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    ||||||| || | |||||| | ||||||||||||||||||||||||||||    
T  19801134 tctgatgaatatttgttatttaattgcttttgggtaacggggtgttacat 19801183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 20339899 - 20339846
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  20339899 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 20339846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 20346493 - 20346440
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  20346493 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 20346440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5583088 - 5583136
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  5583088 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 5583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 14883154 - 14883202
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  14883154 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 14883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 14889831 - 14889879
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  14889831 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 14889879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 18895805 - 18895853
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  18895805 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 18895853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24795854 - 24795902
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  24795854 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 24795902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24801221 - 24801269
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  24801221 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 24801269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40011782 - 40011830
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  40011782 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 40011830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 43028318 - 43028290
Alignment:
Q  41 attgcttttgggtaacggggtgttacatt 69  Q
    |||||||||||||||||||||||||||||    
T  43028318 attgcttttgggtaacggggtgttacatt 43028290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 25463187 - 25463133
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25463187 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttacat 25463133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 7238134 - 7238187
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  7238134 attactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 7238187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 15298974 - 15298921
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||||||||    
T  15298974 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 15298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 17309031 - 17308978
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||||||||    
T  17309031 attactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 17308978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 34134730 - 34134783
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  34134730 attactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 34134783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 1069968 - 1069914
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  1069968 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 1069914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 21897084 - 21897137
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||||| |||||    
T  21897084 attactctgatgtatttatgctattttactgcttttgggtaacggggtattaca 21897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 21966416 - 21966470
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||  ||||||| | |||| ||||||||||||||||||||||    
T  21966416 gattactctgatgtataaatgttatttaattgtttttgggtaacggggtgttaca 21966470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 30800224 - 30800278
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||   |||||| | |||||||||||||||||||||||||||    
T  30800224 gattactctgatgtataattgttatttaattgcttttgggtaacggggtgttaca 30800278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 15332914 - 15332966
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||| ||||||||||||||||||    
T  15332914 attactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 15332966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 16224462 - 16224515
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  16224462 attactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 16224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 11582954 - 11582906
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  11582954 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 11582906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 19097497 - 19097545
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | |||||| | ||| |||||||||||||||||||||||    
T  19097497 tctgatgtatatttgttatttaattacttttgggtaacggggtgttaca 19097545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 21965780 - 21965724
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    ||||| |||| |||||  ||||||| | |||| ||||||||||||||||||||||||    
T  21965780 gattactctgttgtataaatgttatttaattgtttttgggtaacggggtgttacatt 21965724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 33874137 - 33874089
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  33874137 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 33874089  T

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Target: scaffold0606 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 434 - 487
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  434 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 487  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 15471381 - 15471434
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  15471381 attactctgatgtatatatgctattttattgcttttgggtaacggggtgttaca 15471434  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 35149922 - 35149977
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    ||||| |||||||| | |||| ||| ||||||||||||||||||||||||||||||    
T  35149922 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttacat 35149977  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1583212 - 1583159
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  1583212 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 1583159  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 23436762 - 23436815
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||||| |||| |  ||||||| ||||||||||||||||||||||    
T  23436762 attactctgatgtatatatgctgagttattgtttttgggtaacggggtgttaca 23436815  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 390423 - 390375
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  390423 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 390375  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 3260775 - 3260823
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| | || ||| | |||||||||||||||||||||||||||    
T  3260775 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 3260823  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17667376 - 17667328
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  17667376 tctgatgtttatatgctattttatttcttttgggtaacggggtgttaca 17667328  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 29383538 - 29383594
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    ||||| ||||||||||  ||||||| | |||| |||||| |||||||||||||||||    
T  29383538 gattactctgatgtataaatgttatttaattgtttttggataacggggtgttacatt 29383594  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 50656841 - 50656894
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  50656841 attactctgatgtatttatgctattttattgctttcgggtaacggggtgttaca 50656894  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 51854585 - 51854638
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  51854585 attactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 51854638  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 51848502 - 51848448
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  51848502 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 51848448  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 53572101 - 53572155
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  53572101 gattactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 53572155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 29492831 - 29492775
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacatt 69  Q
    ||||| |||||||| | |||| ||| | |||||||||||||||||||||||||||||    
T  29492831 gattactctgatgtttatatgctatttaattgcttttgggtaacggggtgttacatt 29492775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 21351556 - 21351502
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| |||||||| | |||| ||| ||||||||||||||||||||| |||||||    
T  21351556 gattactctgatgtttatatgctattttattgcttttgggtaacgggatgttaca 21351502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 54833997 - 54834051
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||   |||||| | |||||||||||||||||||||||||||    
T  54833997 gattactctgatgtataattgttatttaattgcttttgggtaacggggtgttaca 54834051  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 3554511 - 3554563
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| |||||||| | |||||||| |||||||||| ||||||||||||||||||    
T  3554511 attactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 3554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 10767088 - 10767039
Alignment:
Q  19 tctgatgtat-ttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||| || |||||| | |||||||||||||||||||||||||||    
T  10767088 tctgatgtatattttgttatttaattgcttttgggtaacggggtgttaca 10767039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 3107751 - 3107723
Alignment:
Q  39 ttattgcttttgggtaacggggtgttaca 67  Q
    |||||||||||||||||||||||||||||    
T  3107751 ttattgcttttgggtaacggggtgttaca 3107723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 3783598 - 3783646
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  3783598 tctgatgtttatatgctattttattccttttgggtaacggggtgttaca 3783646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 9772710 - 9772758
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  9772710 tctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 9772758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17596080 - 17596032
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| ||||||||||||||| |||||||||||||    
T  17596080 tctgatgtttatatgctattttattgcttttgggtgacggggtgttaca 17596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28752072 - 28752024
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  28752072 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 28752024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28758239 - 28758191
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||||||| | |||| ||| | |||||||||||||||||||||||||||    
T  28758239 tctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 28758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 64004 - 63950
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  64004 gattactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 63950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0560 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1811 - 1867
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttacattc 70  Q
    |||| ||||||| || | |||||| | ||||||||||||||||||||||||||||||    
T  1811 attactctgatgaatgtttgttatttaattgcttttgggtaacggggtgttacattc 1867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 10561 - 10507
Alignment:
Q  13 gattattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    ||||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  10561 gattactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 10507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 31109 - 31158
Alignment:
Q  19 tctgatgtatttatgttatgttattgcttttgggtaacggggtgttacat 68  Q
    |||||||||| | || ||| | ||||||||||||||||||||||||||||    
T  31109 tctgatgtatatttgctatttaattgcttttgggtaacggggtgttacat 31158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 12993 - 13046
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  12993 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 13046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31236 - 31183
Alignment:
Q  14 attattctgatgtatttatgttatgttattgcttttgggtaacggggtgttaca 67  Q
    |||| ||||||| || | |||||| | |||||||||||||||||||||||||||    
T  31236 attactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 31183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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