View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_low_85 (Length: 206)
Name: NF14649_low_85
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 45587809 - 45587627
Alignment:
| Q |
14 |
caattatcaccgttttcccccaaccctaatcaaagtataccagcaattaattagttaatgttat-----tcggttttttaaatgatttattaattgcatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45587809 |
caattatcaccgttttcccccaaccctaatcaaagtataccaaccattaattagttaatgttatgttattcggttttttaaatgatttattaattgcatt |
45587710 |
T |
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| Q |
109 |
caaaaagcatgcaaatgcatgttagaagacaaacttctcgactgctattaaaagcctcagtcattagtgatgccaagcctatgc |
192 |
Q |
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| T |
45587709 |
-aaaaagcatgcaaatgcatgttagaagacaaacttctcgactgctattaaaagcctctgtcattagtgatgccaagcctatgc |
45587627 |
T |
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