View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14649_low_87 (Length: 202)

Name: NF14649_low_87
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14649_low_87
NF14649_low_87
[»] chr3 (16 HSPs)
chr3 (1-202)||(28126494-28126679)
chr3 (56-202)||(28475482-28475626)
chr3 (71-202)||(27956655-27956787)
chr3 (71-202)||(28476256-28476388)
chr3 (56-179)||(27905225-27905346)
chr3 (136-202)||(28140281-28140347)
chr3 (126-202)||(28076111-28076187)
chr3 (126-202)||(28173172-28173248)
chr3 (129-181)||(28126901-28126953)
chr3 (129-181)||(28140834-28140886)
chr3 (140-185)||(17752639-17752684)
chr3 (140-185)||(19053959-19054004)
chr3 (133-185)||(28155739-28155791)
chr3 (138-182)||(11405302-11405346)
chr3 (71-112)||(28476998-28477039)
chr3 (166-202)||(28476937-28476973)
[»] chr4 (1 HSPs)
chr4 (145-185)||(9393157-9393197)
[»] scaffold0067 (1 HSPs)
scaffold0067 (138-182)||(20473-20517)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28126494 - 28126679
Alignment:
Q  1 tattctcaattctcaatattcttatgatgctagcgactgcaaattggaaaaccaataaataacaatagtgtcattttacttgatcattaattcatataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||             |    
T  28126494 tattctcaattctcaatattcttatgatgctagcgactgcaaattggaaaaccaataaataacaata---tcattttacttgatca-------------a 28126577  T
Q  101 gtttggttgattcctgcacacttctaagataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctcctaagtata 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28126578 gtttggttgattcctgcacacttcaaagataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctcctatgtata 28126677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 28475626 - 28475482
Alignment:
Q  56 taaataacaatagtgtcattttacttgatcattaattcatataaagtttggttgattcctgcacact-tctaagataaagtaagttttctaaaattgttg 154  Q
    ||||||||||||   ||||||| |||||||||| ||||||||| |||||  |||||| |||| |||| || ||||||||||| |||||||||| ||||||    
T  28475626 taaataacaata---tcatttttcttgatcattcattcatatacagtttttttgattactgcgcactatcaaagataaagtaggttttctaaatttgttg 28475530  T
Q  155 gaaagattgtctagttgttgaaccaaaattaagcctcctaagtatatt 202  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28475529 gaaagactgtctagttgttgaaccaaaattaagcctccaaagtatatt 28475482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 27956655 - 27956787
Alignment:
Q  71 tcattttacttgatcattaattcatataaagtttggttgattcctgcacact-tctaagataaagtaagttttctaaaattgttggaaagattgtctagt 169  Q
    ||||||| ||||||||||  |||||||| | |||| |||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||    
T  27956655 tcattttgcttgatcattctttcatatacactttgcttgattactgcacactatcaaagataaagtaggttttctaaaattgttggaaagattgtctggt 27956754  T
Q  170 tgttgaaccaaaattaagcctcctaagtatatt 202  Q
    || ||||||||||||||| |||| |||||||||    
T  27956755 tgctgaaccaaaattaagtctccaaagtatatt 27956787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 28476388 - 28476256
Alignment:
Q  71 tcattttacttgatcattaattcatataaagtttggttgattcctgcacact-tctaagataaagtaagttttctaaaattgttggaaagattgtctagt 169  Q
    ||||||| ||||||||||  |||||||| | || | |||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||    
T  28476388 tcattttgcttgatcattctttcatatacacttcgcttgattactgcacactatcaaagataaagtaggttttctaaaattgttggaaagattgtctggt 28476289  T
Q  170 tgttgaaccaaaattaagcctcctaagtatatt 202  Q
    || |||||| ||||||||||||| |||||||||    
T  28476288 tgctgaaccgaaattaagcctccaaagtatatt 28476256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 27905225 - 27905346
Alignment:
Q  56 taaataacaatagtgtcattttacttgatcattaattcatataaagtttggttgattcctgcacact-tctaagataaagtaagttttctaaaattgttg 154  Q
    ||||||||||||   ||||||| ||| |||||| ||||||||| |||||| |||||| |||| |||| || ||||||||||  |||||||||||||||||    
T  27905225 taaataacaata---tcattttgcttcatcattcattcatatacagtttgtttgattactgcgcactatcaaagataaagttggttttctaaaattgttg 27905321  T
Q  155 gaaagattgtctagttgttgaacca 179  Q
    |||||||||||||||||||||||||    
T  27905322 gaaagattgtctagttgttgaacca 27905346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 28140281 - 28140347
Alignment:
Q  136 aagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctcctaagtatatt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28140281 aagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctccaaagtatatt 28140347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 28076111 - 28076187
Alignment:
Q  126 aagataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctcctaagtatatt 202  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| |||||||||    
T  28076111 aagataaagtaggttttctaaaattgttggaaagatcgtctacttgttgaacaaaaattaagcttccaaagtatatt 28076187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 28173172 - 28173248
Alignment:
Q  126 aagataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaaattaagcctcctaagtatatt 202  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| |||||||||    
T  28173172 aagataaagtaggttttctaaaattgttggaaagatcgtctacttgttgaacaaaaattaagcttccaaagtatatt 28173248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 28126901 - 28126953
Alignment:
Q  129 ataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaa 181  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  28126901 ataaagtaggttttctgaaattgttggaaagattgtctagttgttgaaccaaa 28126953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 28140834 - 28140886
Alignment:
Q  129 ataaagtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaa 181  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  28140834 ataaagtaggttttctgaaattgttggaaagattgtctagttgttgaaccaaa 28140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 17752684 - 17752639
Alignment:
Q  140 tttctaaaattgttggaaagattgtctagttgttgaaccaaaatta 185  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  17752684 tttctaaaattgttgggaagactgtctagttgttgaaccaaaatta 17752639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 19054004 - 19053959
Alignment:
Q  140 tttctaaaattgttggaaagattgtctagttgttgaaccaaaatta 185  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  19054004 tttctaaaattgttgggaagactgtctagttgttgaaccaaaatta 19053959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 28155739 - 28155791
Alignment:
Q  133 agtaagttttctaaaattgttggaaagattgtctagttgttgaaccaaaatta 185  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  28155739 agtatgttttctaaaattattggaaagactgtctagttgttgaaccataatta 28155791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 11405302 - 11405346
Alignment:
Q  138 gttttctaaaattgttggaaagattgtctagttgttgaaccaaaa 182  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||    
T  11405302 gttttctaaaattgttgaaaagattgttcagttgttgaaccaaaa 11405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 28477039 - 28476998
Alignment:
Q  71 tcattttacttgatcattaattcatataaagtttggttgatt 112  Q
    ||||||| ||||||| || |||||||||||||||||||||||    
T  28477039 tcattttgcttgatcgttcattcatataaagtttggttgatt 28476998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 28476973 - 28476937
Alignment:
Q  166 tagttgttgaaccaaaattaagcctcctaagtatatt 202  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  28476973 tagttgttgaaccaaaattaatcctccaaagtatatt 28476937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 9393197 - 9393157
Alignment:
Q  145 aaaattgttggaaagattgtctagttgttgaaccaaaatta 185  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  9393197 aaaattgttggaaagactgtctagttgttgaaccaaaatta 9393157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 20473 - 20517
Alignment:
Q  138 gttttctaaaattgttggaaagattgtctagttgttgaaccaaaa 182  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||    
T  20473 gttttctaaaattgttgaaaagattgttcagttgttgaaccaaaa 20517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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