View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_high_18 (Length: 295)

Name: NF1464_high_18
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1464_high_18
NF1464_high_18
[»] chr5 (12 HSPs)
chr5 (1-165)||(13426937-13427101)
chr5 (1-165)||(13420000-13420164)
chr5 (1-136)||(13413977-13414112)
chr5 (1-119)||(13447552-13447670)
chr5 (1-110)||(13409246-13409355)
chr5 (230-280)||(13427166-13427215)
chr5 (15-102)||(13393158-13393245)
chr5 (230-277)||(13420248-13420294)
chr5 (17-114)||(13388769-13388867)
chr5 (15-105)||(13379454-13379544)
chr5 (17-105)||(13373644-13373732)
chr5 (49-124)||(13384923-13384999)
[»] chr8 (1 HSPs)
chr8 (11-105)||(28429306-28429400)
[»] chr4 (1 HSPs)
chr4 (1-69)||(47601712-47601780)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 13426937 - 13427101
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13426937 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 13427036  T
Q  101 tccctaaagttttgatgcatcaaagttaaattaattagtagctaacaacatagatctaaattaag 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13427037 tccctaaagttttgatgcatcaaagttaaattaattagtagctaacaacatagatctaaattaag 13427101  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 13420000 - 13420164
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  13420000 tggatagatggaatttccccattcattcttcatcatatggaggtcagtgtggcatataccacaatacatcaccttgaacgctacatctttctcaccagtt 13420099  T
Q  101 tccctaaagttttgatgcatcaaagttaaattaattagtagctaacaacatagatctaaattaag 165  Q
    |||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||    
T  13420100 tccctaaagttttgatgcatcaagattgaattaattagtagccaacaacatagatctaaattaag 13420164  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13413977 - 13414112
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 100  Q
    |||||||| |||| ||||||||||||||||   |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  13413977 tggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtt 13414076  T
Q  101 tccctaaagttttgatgcatcaaagttaaattaatt 136  Q
    |||||||| ||||| || | ||||||| ||||||||    
T  13414077 tccctaaaattttggtgtaccaaagttgaattaatt 13414112  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 13447552 - 13447670
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 100  Q
    ||||||| |||  |||||||||||||||| ||| || || || |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||    
T  13447552 tggataggtggttttgccccattcattctgcataatgtgaaggtcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtt 13447651  T
Q  101 tccctaaagttttgatgca 119  Q
    ||||| ||||||| |||||    
T  13447652 tccctgaagttttaatgca 13447670  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13409355 - 13409246
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtt 100  Q
    ||||||| ||||  |||||||| | |||||   ||| ||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||    
T  13409355 tggataggtggatgtgccccatccgttcttggccatgtggaggtctgtgtggcatattccgcaatacaacactttgaatgccacatctttctcacctgtt 13409256  T
Q  101 tccctaaagt 110  Q
    ||||||||||    
T  13409255 tccctaaagt 13409246  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 13427166 - 13427215
Alignment:
Q  230 gatgagttgattaatggaagtaaaccttctggagaaattgaaaggggaaag 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13427166 gatgagttgattaatg-aagtaaaccttctggagaaattgaaaggggaaag 13427215  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 13393245 - 13393158
Alignment:
Q  15 tgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttc 102  Q
    |||||||||||||||| |||||||| ||||| | ||||||||| ||||||||||  || || ||||| |||||||| ||||| |||||    
T  13393245 tgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgccacatctttttcacccgtttc 13393158  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 13420248 - 13420294
Alignment:
Q  230 gatgagttgattaatggaagtaaaccttctggagaaattgaaagggga 277  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  13420248 gatgagttgattaatg-aagaaaaccttctggagaaattgaaagggga 13420294  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 13388867 - 13388769
Alignment:
Q  17 ccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct-aaagttttg 114  Q
    |||||||||||||||  ||| |||| ||| | ||||||||| ||||||||||| |  |||||||| |||||||| ||||| ||||| || |||||||||    
T  13388867 ccccattcattcttcgccatgtggacatctgagtgacatatcccacaatacaatattttgaatgccacatctttttcaccagtttctctgaaagttttg 13388769  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 13379454 - 13379544
Alignment:
Q  15 tgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct 105  Q
    ||||||| |||||||||  ||||||||| || | |||||||||||| ||| | |  || |||||||| ||||| ||||| |||||||||||    
T  13379454 tgccccactcattcttcgccatatggaggtccgagtgacatataccgcaaaatagtactttgaatgccacatccttctcccctgtttccct 13379544  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 13373644 - 13373732
Alignment:
Q  17 ccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct 105  Q
    ||||| || ||||||| ||| |||||||| |  ||||||||||||||||| |  || |||||||| |||||||| || || ||||||||    
T  13373644 ccccactcgttcttcagcatgtggagatccgaatgacatataccacaatatagtactttgaatgccacatctttttctcccgtttccct 13373732  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13384999 - 13384923
Alignment:
Q  49 gtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct-aaagttttgatgcatcaaa 124  Q
    ||||||||| ||||||||||| |  |||||||| |||||||| || |||||||| || ||||||||||  |||||||    
T  13384999 gtgacatattccacaatacaatattttgaatgccacatctttttctcctgtttctctgaaagttttgacacatcaaa 13384923  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 28429400 - 28429306
Alignment:
Q  11 gaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct 105  Q
    ||||| |||||||||||||||| ||| || ||||| | |||||||||||||||| | | ||| ||||||  |||||||||||| || ||||||||    
T  28429400 gaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaatagcactttgaatcttacatctttctctccagtttccct 28429306  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47601712 - 47601780
Alignment:
Q  1 tggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaa 69  Q
    ||||||| ||||  |||||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||    
T  47601712 tggataggtggatatgccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaa 47601780  T

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