View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1464_high_20 (Length: 273)
Name: NF1464_high_20
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_high_20 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 31121903 - 31121644
Alignment:
| Q |
14 |
aaattatgtcgtaggaggagaacattgtccgcttcttattttattttggtgcagtaggtagtaagagtaacgataactttttaaaaactcatgtagttta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31121903 |
aaattatgtcgtaggaggagaacattgttcgcttcttattttattttggtgtagtaggtagtaagagtaacgataactttttgaaaactcatgtagttta |
31121804 |
T |
|
| Q |
114 |
cttcttattttcaattattcaatacttttaattttagtgataagtaatacactttaaataaacattgaaagactatagaattagttgacaaaaatatcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31121803 |
cttcttattttcaattattcaatacttttaattttagtgataagtaatacactttaaataaacattgaaagactatagaattagttgacaaaaatataat |
31121704 |
T |
|
| Q |
214 |
ttttcaaaggaagataatttattaattaaattgacactcatggccattttacaaccatcc |
273 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31121703 |
atttcataggaagataatttattaattaaattgacactcatggccattttacaaccatcc |
31121644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 6614158 - 6614118
Alignment:
| Q |
177 |
attgaaagactatagaattagttgacaaaaatatcattttt |
217 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
6614158 |
attgaaagactagagaattatttgacaaaaatataattttt |
6614118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University