View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_high_4 (Length: 473)
Name: NF1464_high_4
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_high_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 55866511 - 55866954
Alignment:
| Q |
18 |
aaagtaacatgttgaaactgatcaaggtgtgtcctttcgttatcacatccttgtgctactgttattgatttgtttcaccaggaacaataagacttcttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55866511 |
aaagtaacatgttgaaactgatcaaggtgtgtcctttcgttatcacatccttctgctactgttattgatttgttttaccaggaacaataagacttctttg |
55866610 |
T |
|
| Q |
118 |
tcatatttctatcannnnnnnnnnnnnnnnnnngattgaaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaaccattcataatttgtg |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55866611 |
tcatatttctatcatttttttttcaatttttt-gattgaaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaaccattcataatttgtg |
55866709 |
T |
|
| Q |
218 |
taaaaatataaccaaaacacaaataatagaagccttaatttactgattatataccttccatcaacaagttcttccttgaatttgagaaacttagctggtt |
317 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55866710 |
taaaaatataaccaaaacacaactaataaaagccttaatttactgattatataccttccatcaacaagttcttccttgaatttgagaaactcagctggtt |
55866809 |
T |
|
| Q |
318 |
gcaaattttcaacaacaagagcatgcacattcactcttagataatcccaaataccttgccttagatgaacagcaagagcaacccatggtggcagaactat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
55866810 |
gcaaattttcaacaacaagagcatgcacattcactcttagataatcccaaatacctggccttagacgaacagcaagagcaacccatggtggcaaaactat |
55866909 |
T |
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| Q |
418 |
tactcctaaatacctggccttgtgtgcgttgtttttgttgttctt |
462 |
Q |
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| T |
55866910 |
tactcctaaatacctggccttgtgtgcgttgattttgttgttctt |
55866954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 200 - 418
Target Start/End: Complemental strand, 51650205 - 51649998
Alignment:
| Q |
200 |
aaccattcataatttgtgtaaaaatataaccaaaacacaaataatagaagccttaatttactgattatataccttccatcaacaagttcttccttgaatt |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51650205 |
aaccattcataatttgggtaaaaatataaccaaaacacaagtaat-----------tttactgattaattaccttccatcaacaagttcttccttgaatt |
51650117 |
T |
|
| Q |
300 |
tgagaaacttagctggttgcaaattttcaacaacaagagcatgcacattcactcttagataatcccaaataccttgccttagatgaacagcaagagcaac |
399 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| || |||||||||| ||||| |
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| T |
51650116 |
tgagaaactcagcaggttgcaaattttcaacaacaagagcatgcacatttactctcagatactcccaaatacctggccttggacgaacagcaagtgcaac |
51650017 |
T |
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| Q |
400 |
ccatggtggcagaactatt |
418 |
Q |
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||||||||||| ||||||| |
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| T |
51650016 |
ccatggtggcaaaactatt |
51649998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 43123576 - 43123929
Alignment:
| Q |
18 |
aaagtaacatgttgaaactgatcaaggtgtgtcctttcgttatcacatccttgtgctactgttattgatttgtttcaccaggaacaataagacttcttta |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43123576 |
aaagcaacatgttgaaactgatcaaggtgtgtcctttccttatcacatccttgtgctactgttattgatttgtttcaccaggaacaataagacttctttg |
43123675 |
T |
|
| Q |
118 |
tcatatttctatcannnnnnnnnnnnnnnnnnngattgaaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaaccattcataatttgtg |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43123676 |
tcatatttctatcatttttttttcaatttttt-gattgaaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaaccattcataatttgtg |
43123774 |
T |
|
| Q |
218 |
taaaaatataaccaaaacacaaataatagaagccttaatttactgattatataccttccatcaacaagttcttccttgaatttgagaaacttagctggtt |
317 |
Q |
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|||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
43123775 |
taaaaatataactaaaacacaactaataaaagccttaatttactgattatataccttccatcaacaagttctt-cttgaatttgagaaactcagctggtt |
43123873 |
T |
|
| Q |
318 |
gcaaattttcaacaacaagagcatgcacattcactcttagataatcccaaatacct |
373 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43123874 |
gcaaattttcgacaacaagagcatgcacattcactcttagataatcccaaatacct |
43123929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 197 - 462
Target Start/End: Complemental strand, 29144083 - 29143818
Alignment:
| Q |
197 |
caaaaccattcataatttgtgtaaaaatataaccaaaacacaaataatagaagccttaatttactgattatataccttccatcaacaagttcttccttga |
296 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
29144083 |
caaaaccattcataatttgtgtaaaaatatagccaaaacacaactaataaaagccttaatttactgatttattatcttccatcaacaagttcttccttga |
29143984 |
T |
|
| Q |
297 |
atttgagaaacttagctggttgcaaattttcaacaacaagagcatgcacattcactcttagataatcccaaataccttgccttagatgaacagcaagagc |
396 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| || ||||| ||||||||||||| |
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| T |
29143983 |
atttgagaaactcagctggttgcaaattttcaacaacaagagcatgcacgttcactcttagatactctcaaatacctggcattagacgaacagcaagagc |
29143884 |
T |
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| Q |
397 |
aacccatggtggcagaactattactcctaaatacctggccttgtgtgcgttgtttttgttgttctt |
462 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29143883 |
aacccatggtggcagaactattactcccaaatacctggccttgtgtgcgttgtttttgttgttctt |
29143818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 251294 - 251229
Alignment:
| Q |
18 |
aaagtaacatgttgaaactgatcaaggtgtgtcctttcgttatcacatccttgtgctactgttatt |
83 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| | ||||||| |||||| |||||||||||| |
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| T |
251294 |
aaagtaacatgttgaatctgatcaaggtgtgtcccatagttatcatatccttaagctactgttatt |
251229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 46026918 - 46026873
Alignment:
| Q |
156 |
aaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaa |
201 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||| |
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| T |
46026918 |
aaatccatcttcatcaccaaatccatgaaaacattgttgaacaaaa |
46026873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 587784 - 587829
Alignment:
| Q |
156 |
aaatctatcttcatcaccaaatccatgaaagcatggttgaacaaaa |
201 |
Q |
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||||| |||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
587784 |
aaatccatcttcatcaccaaattcatgaaaacattgttgaacaaaa |
587829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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