View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_high_6 (Length: 457)
Name: NF1464_high_6
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 28894221 - 28894451
Alignment:
| Q |
16 |
attctaagtaaaccacaaatctattaacaaaaagtaaatataacataaccgca----tcttatgtaaggccaagcacatgctataagatatgaaacaagt |
111 |
Q |
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| T |
28894221 |
attctaagtaaaccacaaatctattaacaaaaagtaaatataacataaccgcacaaatcttatgtaaggccaagcacatgctataagatatgaaacaagt |
28894320 |
T |
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| Q |
112 |
atgaaatgactgctaccatttataaaaacagaaaacaagcagatgctgaacttattcacttaccaaacctttttcaaaataaaatatgaccagacaacaa |
211 |
Q |
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| T |
28894321 |
atgaaatgactgctaccatttataaaaacagaaaacaagcagatgctgaacttattcacttaccaaacctttttcaaaataaaatatgaccagacaacaa |
28894420 |
T |
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| Q |
212 |
aacaagcatcagtgtgtatttacaataactg |
242 |
Q |
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| T |
28894421 |
aacaagcatcagtgtgtatttacaataactg |
28894451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 28894503 - 28894650
Alignment:
| Q |
294 |
gatatccgatgttccttttactttagaaagtagatcaactagttactgccaaggaagaaataaactcaatttagcatattattttaggaattcacttctc |
393 |
Q |
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| T |
28894503 |
gatatccgatgttccttttatttcagaaaacagatcaaccagttactgccaaggaagaaataaactcaatttaacatattattttaggaattcacttctc |
28894602 |
T |
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| Q |
394 |
attagcatgcttgttttccaggaaaaatcgctccttgtaatgcatgtt |
441 |
Q |
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| T |
28894603 |
attagcatgcttgttttccaggaaaaatcgctccttgtaatgcatgtt |
28894650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 28904262 - 28904379
Alignment:
| Q |
74 |
tgtaaggccaagcacatgctataagatatgaaacaagtatgaaatgactgctaccatttataaaaacagaaaacaagcagatgctgaacttattcactta |
173 |
Q |
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| T |
28904262 |
tgtaaagccaagcacatgc---aagataggaaacaagtatgaaatgactgctaccaattataaaaacagaaaacaagcatatgctaaacttatccaccaa |
28904358 |
T |
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| Q |
174 |
ccaaacctttttcaaaataaa |
194 |
Q |
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| T |
28904359 |
ccaaacctttttcaaaataaa |
28904379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 28927378 - 28927439
Alignment:
| Q |
96 |
aagatatgaaacaagtatgaaatgactgctaccattta-taaaaacagaaaacaagcagatg |
156 |
Q |
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| T |
28927378 |
aagataggaaacaagtatgaaatgactgcgaccaattagaaaaaacagcaaactagcagatg |
28927439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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