View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_1 (Length: 746)
Name: NF1464_low_1
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 50289030 - 50288603
Alignment:
| Q |
7 |
gaaataaaccatacatagcacgaattggaaatctatctaagattcaaaatacaaaaagacccattagagagagatcgacactttactcttcttcggtggc |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289030 |
gaaataaaccatacatagcacgaattagaaatctatctaagattcaaaatacaaaaagccccattagagagagatcgacactttactcttcttcggtggc |
50288931 |
T |
|
| Q |
107 |
gatttcaccatttttcttgttatgcttccttgcgtacctctggttcctcaaaaactttggatccatctacagcaattaaaaacaatgaacaattaattaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288930 |
gatttcaccatttttcttgttatgcttccttgcgtacctctggttcctcaaaaactttggatccatctacagcaattaaaaacaatgaacaattaattaa |
50288831 |
T |
|
| Q |
207 |
aatctcattacaaaatagatcaatcgttttaaaaatcagaggagaatgatgaatacatacccctttggtggaagtgtggcgatgcctctttggcttcttg |
306 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288830 |
aatctcattacaaaatagatcaatcgtttgaaaaatcagaggagaatgatgaatacatacccctttggtggaagtgtggcgatgcctctttggcttcttg |
50288731 |
T |
|
| Q |
307 |
atgccatttttgtgggccttgtaagactggttgtgagctgtgtgatgctccgactttgccatctctgaaattcaacaaatacacacctaattctgaagat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50288730 |
atgccatttttgtgggccttgtaagactggttgtgagcggtgtgattcttcgactttgccatctctgaaattcaacaaatacaaacctaattctgaagat |
50288631 |
T |
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| Q |
407 |
gcagtggctcgagggttttgttcagcgg |
434 |
Q |
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| T |
50288630 |
gcagtggctctagggttttgttcagcgg |
50288603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 257 - 381
Target Start/End: Complemental strand, 50284433 - 50284309
Alignment:
| Q |
257 |
gaatacatacccctttggtggaagtgtggcgatgcctctttggcttcttgatgccatttttgtgggccttgtaagactggttgtgagctgtgtgatgctc |
356 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| || |
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| T |
50284433 |
gaatacatacccccttggtggaagtgtggcgatgcctctttggctttttgatgccattcttgtgagccttgtaagactggttgtgagcagtgtgattctt |
50284334 |
T |
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| Q |
357 |
cgactttgccatctctgaaattcaa |
381 |
Q |
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|||||| ||||| |||||||||||| |
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| T |
50284333 |
cgacttcgccatttctgaaattcaa |
50284309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 50284633 - 50284534
Alignment:
| Q |
76 |
agagatcgacactttactcttcttcggtggcgatttcaccatttttcttgttatgcttccttgcgtacctctggttcctcaaaaactttggatccatcta |
175 |
Q |
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||||||| |||||||||||||| | | |||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50284633 |
agagatcaacactttactcttcagcagaagcgacttccccatttttcttgttgtgcttccttgcatacctctggttcctcaaaaactttggatccatcta |
50284534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 610 - 708
Target Start/End: Complemental strand, 41957504 - 41957406
Alignment:
| Q |
610 |
gacttgttacatttcatacaagaaacgttgaattttgagtaacatgttctagttaaaacaatactccctttggtcttttttaaaagtaacaaaaatatc |
708 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41957504 |
gacttgttacattttatacaagaaacattgaattttgagtaacacgttccagttaaaacaatactccctttggtcttttttaaaagtaacaaaaatatc |
41957406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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