View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_low_12 (Length: 400)

Name: NF1464_low_12
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1464_low_12
NF1464_low_12
[»] chr8 (6 HSPs)
chr8 (11-379)||(41879948-41880317)
chr8 (282-358)||(1993751-1993827)
chr8 (282-333)||(8368482-8368533)
chr8 (282-333)||(43066015-43066066)
chr8 (231-275)||(8368398-8368443)
chr8 (288-333)||(44081087-44081132)
[»] chr7 (2 HSPs)
chr7 (282-353)||(43358973-43359043)
chr7 (282-333)||(48460679-48460730)
[»] chr1 (4 HSPs)
chr1 (282-331)||(6487750-6487799)
chr1 (279-333)||(7178219-7178273)
chr1 (282-331)||(15066132-15066181)
chr1 (281-333)||(1994973-1995025)
[»] chr4 (3 HSPs)
chr4 (282-333)||(24059244-24059295)
chr4 (282-332)||(5817491-5817541)
chr4 (288-332)||(25784025-25784069)
[»] chr3 (2 HSPs)
chr3 (282-333)||(12224114-12224165)
chr3 (288-333)||(23004776-23004821)
[»] chr6 (1 HSPs)
chr6 (283-333)||(9045853-9045903)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 41879948 - 41880317
Alignment:
Q  11 catagggttatatatgatgaggatcaacaaaataagatgcgtattacgttgagaaagatttaaagagcacgagaaatgggaaacattatgttcatgtacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |    
T  41879948 catagggttatatatgatgaggatcaacaaaataagatgcgtattacgttgagaaagattaaaagagcacgagaaatgggaaaaattatgttcatgtagc 41880047  T
Q  111 atctatccaagtggtgcatg-atatatagcaatggaattcttgtattacttactacattctcaaagaaagcagattgtcttaagt-nnnnnnnttggata 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||    
T  41880048 atctatccaagtggtgcatgtatatatagcaatggaattcttgtattacttactacattctcaaagaaagcagattgtcttaagtaaaaaaaattgggta 41880147  T
Q  209 atgtttcatcgacannnnnnnnctccatacacacaatgtaccacccatatatgagtgtgtgagagactagatagacacgtgtcacaattgtgtgtggatg 308  Q
    ||||| ||||||||        ||||||||| ||| |||||||||  |||||||||||| ||||||| | ||||| ||||||||||||||||| | ||||    
T  41880148 atgttccatcgaca-ttcttttctccatacatacagtgtaccacctttatatgagtgtgcgagagaccacatagatacgtgtcacaattgtgtatagatg 41880246  T
Q  309 tacaaataatacatgccacctaagggtgtcaatttatcattgctcaaaaaatttgacccatttatgcggta 379  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41880247 tacaaatggtacatgccacctaagggtgtcaatttatcattgctcaaaaaatttgatccatttatgcggta 41880317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 1993751 - 1993827
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagggtgtcaatttatcattgctcaaaaa 358  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||||||||||||  ||| || ||||| | ||||||||    
T  1993751 gacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactcaaaaa 1993827  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 8368482 - 8368533
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||| |||||||||||||||||| ||||||| |  ||||||||||||||||    
T  8368482 gacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagg 8368533  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 43066015 - 43066066
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||||||    
T  43066015 gacacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaagg 43066066  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 8368398 - 8368443
Alignment:
Q  231 ctccatacacacaatgtaccacccata-tatgagtgtgtgagagac 275  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||    
T  8368398 ctccatacacacaatgtgccacccatagtaagagtgtgtgagagac 8368443  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 44081132 - 44081087
Alignment:
Q  288 tgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||||||||  |||||||||||||||| |||||||||| ||||||    
T  44081132 tgtcacaattacgtgtggatgtacaaatgatacatgccatctaagg 44081087  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 43359043 - 43358973
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagggtgtcaatttatcattgctc 353  Q
    ||||||||||||||||||| |||||||||||| || |||||| |||||||| |||||||| |||||||||||    
T  43359043 gacacgtgtcacaattgtgagtggatgtacaagtagtacatg-cacctaagagtgtcaatgtatcattgctc 43358973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 48460730 - 48460679
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||| ||||| |||||| |||||||||||||||  ||||||||||||||||    
T  48460730 gacacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaagg 48460679  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 6487799 - 6487750
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaa 331  Q
    ||||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  6487799 gacacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaa 6487750  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 7178219 - 7178273
Alignment:
Q  279 atagacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    |||||||| |||||||||||| ||||| |||||||||  |||||| |||||||||    
T  7178219 atagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaagg 7178273  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 15066132 - 15066181
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaa 331  Q
    ||||| |||||||||||||| || |||||||||| |||||||| ||||||    
T  15066132 gacacatgtcacaattgtgtatgaatgtacaaatgatacatgctacctaa 15066181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 1995025 - 1994973
Alignment:
Q  281 agacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    |||||| ||||| |||||||||||| ||||||| |  ||||||||||||||||    
T  1995025 agacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 1994973  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 24059244 - 24059295
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||| |||||||||||| ||||| ||||||||| |||||||||| ||||||    
T  24059244 gacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaagg 24059295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 5817491 - 5817541
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaag 332  Q
    ||||| |||||||||||||||||| ||||||| |  |||||||||||||||    
T  5817491 gacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaag 5817541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 25784025 - 25784069
Alignment:
Q  288 tgtcacaattgtgtgtggatgtacaaataatacatgccacctaag 332  Q
    |||||||||| ||||||||||||||| |  |||||||||||||||    
T  25784025 tgtcacaattatgtgtggatgtacaagtggtacatgccacctaag 25784069  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 12224114 - 12224165
Alignment:
Q  282 gacacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    ||||| ||||| |||||||||||| |||||||||  ||||||||||||||||    
T  12224114 gacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaagg 12224165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 23004821 - 23004776
Alignment:
Q  288 tgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||||    
T  23004821 tgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagg 23004776  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 9045903 - 9045853
Alignment:
Q  283 acacgtgtcacaattgtgtgtggatgtacaaataatacatgccacctaagg 333  Q
    |||| ||||| |||||||||||| ||||||| | |||||||||||||||||    
T  9045903 acacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaagg 9045853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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