View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1464_low_14 (Length: 374)

Name: NF1464_low_14
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1464_low_14
NF1464_low_14
[»] chr3 (30 HSPs)
chr3 (120-288)||(29323269-29323437)
chr3 (134-288)||(28991088-28991247)
chr3 (162-288)||(13159282-13159408)
chr3 (134-288)||(44906211-44906364)
chr3 (162-285)||(45200154-45200277)
chr3 (134-281)||(31372936-31373082)
chr3 (120-288)||(29170461-29170629)
chr3 (120-288)||(28986106-28986263)
chr3 (134-247)||(50463200-50463318)
chr3 (134-288)||(18971756-18971910)
chr3 (134-288)||(26135532-26135691)
chr3 (120-281)||(38734008-38734166)
chr3 (134-288)||(45317055-45317213)
chr3 (120-244)||(40503843-40503972)
chr3 (134-275)||(25630977-25631118)
chr3 (120-242)||(42443834-42443961)
chr3 (166-288)||(46558921-46559041)
chr3 (120-288)||(16341524-16341692)
chr3 (165-288)||(53302520-53302642)
chr3 (165-288)||(53303687-53303809)
chr3 (162-242)||(9145299-9145379)
chr3 (120-226)||(24425923-24426032)
chr3 (120-247)||(42591005-42591136)
chr3 (151-211)||(33775104-33775164)
chr3 (244-288)||(25630939-25630983)
chr3 (189-247)||(55140075-55140132)
chr3 (230-288)||(33775050-33775103)
chr3 (248-288)||(24426032-24426072)
chr3 (119-178)||(7956107-7956166)
chr3 (120-148)||(9145390-9145418)
[»] chr1 (22 HSPs)
chr1 (134-288)||(5154119-5154273)
chr1 (134-288)||(26519876-26520035)
chr1 (120-288)||(31198783-31198951)
chr1 (134-288)||(29579554-29579713)
chr1 (134-288)||(8223158-8223311)
chr1 (134-245)||(35825387-35825503)
chr1 (126-288)||(21070062-21070223)
chr1 (161-288)||(44745703-44745825)
chr1 (134-245)||(48814595-48814705)
chr1 (134-245)||(50579293-50579409)
chr1 (165-280)||(26003580-26003685)
chr1 (161-241)||(34968311-34968391)
chr1 (170-288)||(36368646-36368759)
chr1 (134-247)||(4447243-4447358)
chr1 (120-241)||(13982556-13982680)
chr1 (162-250)||(7025850-7025938)
chr1 (134-225)||(38614391-38614482)
chr1 (164-211)||(24672687-24672734)
chr1 (162-220)||(10923818-10923875)
chr1 (202-281)||(37573425-37573503)
chr1 (220-286)||(1356822-1356888)
chr1 (118-206)||(1356731-1356824)
[»] chr4 (23 HSPs)
chr4 (134-288)||(31845891-31846050)
chr4 (120-288)||(28185051-28185219)
chr4 (134-288)||(49269214-49269368)
chr4 (134-288)||(13391106-13391255)
chr4 (134-288)||(1763844-1763995)
chr4 (120-288)||(28972951-28973119)
chr4 (134-245)||(48080553-48080664)
chr4 (162-288)||(55826067-55826192)
chr4 (120-288)||(6377043-6377210)
chr4 (134-245)||(7878580-7878691)
chr4 (162-280)||(55762267-55762384)
chr4 (134-288)||(34487442-34487591)
chr4 (134-288)||(51549455-51549604)
chr4 (134-288)||(7069315-7069468)
chr4 (162-247)||(11509159-11509244)
chr4 (134-288)||(41235585-41235740)
chr4 (168-281)||(42384179-42384292)
chr4 (126-253)||(18732556-18732684)
chr4 (116-224)||(32352524-32352633)
chr4 (168-245)||(47461789-47461866)
chr4 (134-242)||(36505538-36505653)
chr4 (133-213)||(13051595-13051674)
chr4 (241-281)||(48847703-48847743)
[»] scaffold0002 (1 HSPs)
scaffold0002 (162-288)||(147580-147706)
[»] chr7 (12 HSPs)
chr7 (119-288)||(32455393-32455567)
chr7 (134-280)||(29646597-29646748)
chr7 (119-280)||(46510590-46510756)
chr7 (134-288)||(8242081-8242229)
chr7 (120-288)||(25942402-25942569)
chr7 (166-288)||(10361092-10361209)
chr7 (134-248)||(13932692-13932811)
chr7 (122-288)||(19347881-19348046)
chr7 (165-288)||(45261339-45261456)
chr7 (165-245)||(11910790-11910870)
chr7 (151-259)||(297639-297752)
chr7 (166-235)||(34080015-34080083)
[»] chr2 (14 HSPs)
chr2 (120-288)||(3587161-3587329)
chr2 (120-288)||(12569435-12569603)
chr2 (165-259)||(9651046-9651140)
chr2 (161-288)||(3237485-3237612)
chr2 (123-259)||(25325171-25325311)
chr2 (134-288)||(42807958-42808112)
chr2 (134-245)||(11706543-11706659)
chr2 (120-250)||(44088397-44088536)
chr2 (134-247)||(26827427-26827546)
chr2 (210-288)||(4185273-4185351)
chr2 (168-245)||(33907140-33907217)
chr2 (134-209)||(4158670-4158750)
chr2 (120-163)||(4185228-4185271)
chr2 (133-213)||(44088632-44088712)
[»] scaffold0024 (1 HSPs)
scaffold0024 (161-288)||(58202-58329)
[»] scaffold0110 (1 HSPs)
scaffold0110 (120-288)||(49452-49620)
[»] chr8 (16 HSPs)
chr8 (134-247)||(27126598-27126711)
chr8 (134-288)||(2612543-2612697)
chr8 (120-259)||(39584855-39584993)
chr8 (170-281)||(26741263-26741374)
chr8 (121-288)||(37698000-37698162)
chr8 (137-234)||(15870794-15870891)
chr8 (120-247)||(35917711-35917837)
chr8 (165-250)||(18404809-18404894)
chr8 (134-242)||(6837736-6837850)
chr8 (167-247)||(35596385-35596465)
chr8 (134-245)||(44599341-44599457)
chr8 (186-243)||(7990296-7990353)
chr8 (184-253)||(26909929-26909997)
chr8 (152-220)||(41427954-41428022)
chr8 (243-281)||(1386655-1386693)
chr8 (260-288)||(27126706-27126734)
[»] chr6 (10 HSPs)
chr6 (161-288)||(34677095-34677223)
chr6 (120-247)||(30044098-30044230)
chr6 (134-243)||(15707247-15707361)
chr6 (118-250)||(2978549-2978685)
chr6 (134-259)||(34760334-34760464)
chr6 (120-220)||(11545929-11546034)
chr6 (134-288)||(10321386-10321545)
chr6 (133-281)||(32011683-32011826)
chr6 (134-201)||(6862060-6862130)
chr6 (134-170)||(21038801-21038837)
[»] chr5 (9 HSPs)
chr5 (134-288)||(18405696-18405854)
chr5 (134-242)||(28210814-28210927)
chr5 (134-247)||(10371303-10371421)
chr5 (165-247)||(34374658-34374740)
chr5 (166-288)||(35540174-35540291)
chr5 (186-259)||(18256549-18256622)
chr5 (244-281)||(18961414-18961451)
chr5 (244-281)||(18963324-18963361)
chr5 (202-281)||(18720358-18720438)
[»] scaffold0137 (2 HSPs)
scaffold0137 (142-247)||(24262-24362)
scaffold0137 (260-288)||(24357-24385)
[»] scaffold0242 (1 HSPs)
scaffold0242 (137-225)||(3701-3794)
[»] scaffold0125 (1 HSPs)
scaffold0125 (162-224)||(22106-22168)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 29323437 - 29323269
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  29323437 tagagctgtcaaaaatgggccggcccattggcccatatttttgggccgggcctaaaaaactaataaaaaaatgcgctcgggctttttcggcccaagccca 29323338  T
Q  220 tttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29323337 tttgggccagacaaaagttgggccgggccgggctggcccactgggctttgggccggcccattggcccat 29323269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 28991088 - 28991247
Alignment:
Q  134 atgggccggcccattgacccatatttttggg-----ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| ||||||||||||||     ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  28991088 atgggccggcccattggcccatatttttgggtcgggccgggcctaaaaaactaacaaaaaaatgcgctcgggctttttcggcccaagcccatttgggcca 28991187  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28991188 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 28991247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 13159408 - 13159282
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13159408 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 13159309  T
Q  262 gggctttgggccggcccattggcccat 288  Q
    ||| |||||||||||||||||||||||    
T  13159308 gggatttgggccggcccattggcccat 13159282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 44906364 - 44906211
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||    
T  44906364 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaa-tgcactcgggaattttcggcccaagcccatttgggccatacaa 44906266  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44906265 aagttgggccgggccgggctggcccaccggactttgggccggcccattagcccat 44906211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 45200277 - 45200154
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||    
T  45200277 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagtccatttgggctagacaaaagttgggttgggccgggctggcccacc 45200178  T
Q  262 gggctttgggccggcccattggcc 285  Q
    ||||||||||||||||||||||||    
T  45200177 gggctttgggccggcccattggcc 45200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 134 - 281
Target Start/End: Complemental strand, 31373082 - 31372936
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| | ||    
T  31373082 atgggccggcccattg-cccatatttttgggccgggcctaaaaaactaaccaaaaaatgcactcgagctttttcggcccaagcccatttgggccataaaa 31372984  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||||| |||||||| |||||||| || ||||||||||||||||||    
T  31372983 aagttgggtcgggccggactggcccatcgagctttgggccggcccatt 31372936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 29170629 - 29170461
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||| |||||||||||||||| |||    
T  29170629 tagagctgttaaaaatgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaaccaaaaaatgcactcgggcttttttggcacaa 29170530  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| ||||||||||||||||||     || |||||||||||||||||||||| ||| ||||||    
T  29170529 gcccatttgggccatacaaaagttgggccgggc-----tgccccaccgggctttgggccggcctattagcccat 29170461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 28986263 - 28986106
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    ||||||| ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  28986263 tagagctatcaaaaatgggccggtccattggcccatatttt-gggccgggcctaaaaaactaacgaaaaaatgcactcgggcttttttggcccaagccca 28986165  T
Q  220 tttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||| |||||||||          ||||||||||| ||||||||||||||||||||||||||||    
T  28986164 tttgggccatacaaaagtt----------gggctggcccatcgggctttgggccggcccattggcccat 28986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 50463318 - 50463200
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50463318 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 50463219  T
Q  229 gacaaaagttgggccgggc 247  Q
    |||||||||||||||||||    
T  50463218 gacaaaagttgggccgggc 50463200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 18971756 - 18971910
Alignment:
Q  134 atgggccggcccattgacccatatttttggg-----ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||| ||||| |||| |||||||| |||||||| ||||||||||||||||    
T  18971756 atgggccggcccattgacccatatttttgggtcggtccgggcctaaaaaactaatcaaaatatgcactcgggctgttttggcctaagcccatttgggcca 18971855  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||     ||||||||||||||||||| |||||||| ||||||||| ||||||    
T  18971856 tacaaaagtt-----gggccgggctggcccaccgagctttgggtcggcccattagcccat 18971910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 26135691 - 26135532
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||| ||||     |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||     
T  26135691 atgggccggcccattggcccatatttttgggtcgggtcgggcctaaaaaactaaccaaaaaatgaaatcgggctttttcggcccaagcccatttgggccg 26135592  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||||| |||||||| |||| |||| ||||||| |||||||||||| ||||||    
T  26135591 tacaaaagttgggtcgggccggactggtccactgggctttaggccggcccattagcccat 26135532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 38734166 - 38734008
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| | ||| |||||||||||||  ||||| || |||||| |||||  |||||| ||||    
T  38734166 tagagctgtcgaaaatgggacggcccattggcccatatttttggtctgggtctaaaaaactaac--aaaaaggcactcggg-tttttcagcccaaaccca 38734070  T
Q  220 tttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    ||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  38734069 tttgggccatacaaaagttgggctggaccgggctggaccaccgggctttgggccggcccatt 38734008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 45317213 - 45317055
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||| ||||||||  ||||||||||||||||||     |||||||||||||| ||||||||  ||||| |||||| |||| |||||||| |||||||    
T  45317213 atgggccagcccattggtccatatttttgggccgggtcgggcctaaaaaactaac-aaaaaatgtactcggactttttcggcctaagcccatatgggcca 45317115  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  45317114 tacaaaagttgggccgggccgggttgggccaccgggctttgggccggcccattagcccat 45317055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 40503972 - 40503843
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||     || ||||| ||||||||||||| ||||| |||||| |||||||    
T  40503972 tagagctgtcaaaaatgggctgacccattggcccatatttttgggccgggccggacctagaaaaccaaccaaaaaatgcactcggactttttcggcccaa 40503873  T
Q  215 gcccatttgggccagacaaaagttgggccg 244  Q
    |||||||||||||| |||||||||||||||    
T  40503872 gcccatttgggccatacaaaagttgggccg 40503843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 25631118 - 25630977
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcct------aaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcc 227  Q
    |||||||||||||||| |||||||||||||||||||||       ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  25631118 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaaactaacgaaaaa-tgcactcgggcttttttggcccaagcccatttgggcc 25631020  T
Q  228 agacaaaagttgggccgggccgggctggcccaccgggctttgggccgg 275  Q
      ||||||||||||||     |||||||||||||||||||||||||||    
T  25631019 ttacaaaagttgggcc-----gggctggcccaccgggctttgggccgg 25630977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 42443834 - 42443961
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||| |||||||||||| |||||||||||| ||||||| |||||     |||||||||||| || |||||||| ||||||||||||||||||||    
T  42443834 tagagctgtcgaaaatgggccggtccattgacccatgtttttggaccgggtcgggcctaaaaaactaccccaaaaatgcactcgggcttttttggcccaa 42443933  T
Q  215 gcccatttgggccagacaaaagttgggc 242  Q
    || ||||||||||| |||||||||||||    
T  42443934 gcacatttgggccatacaaaagttgggc 42443961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 46559041 - 46558921
Alignment:
Q  166 cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggc 265  Q
    ||||||||||||||||||  |||||||| |||||| ||||| | |||||| |||||||||||| | ||||||||||||||||| |||||||||| |||||    
T  46559041 cgggcctaaaaaactaac--aaaaatgcactcgggttttttcgacccaagtccatttgggccatataaaagttgggccgggccaggctggcccatcgggc 46558944  T
Q  266 tttgggccggcccattggcccat 288  Q
    |||||||||||||||| ||||||    
T  46558943 tttgggccggcccattagcccat 46558921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 16341692 - 16341524
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||| ||     |||||||||||||||||| ||| |||||| ||||| |||||||    
T  16341692 tagagctgtcaaaaatgggccagcccattgggccatgtttttgggccggaccggacctaaaaaactaaccaaaaactgcactcggggtttttcggcccaa 16341593  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |  ||||||||||| |||||||||     || |||||||||||||||| |||||||||||||| ||| ||||||    
T  16341592 gttcatttgggccatacaaaagtt-----ggcccgggctggcccaccgagctttgggccggcctattagcccat 16341524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 53302520 - 53302642
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccggg 264  Q
    ||||||||||||||||| || ||||| || || ||| ||||||||||||||| || |||||||| || |||||| | ||||||||||||||||||| |||    
T  53302520 ccgggcctaaaaaactagcccaaaaa-gcacttgggtttttttggcccaagctcagttgggccatacgaaagttcgaccgggccgggctggcccactggg 53302618  T
Q  265 ctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||    
T  53302619 ctttgggccggcccattggcccat 53302642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 53303687 - 53303809
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccggg 264  Q
    ||||||||||||||||| || ||||| || || ||| ||||||||||||||| || |||||||| || |||||| | ||||||||||||||||||| |||    
T  53303687 ccgggcctaaaaaactagcccaaaaa-gcacttgggtttttttggcccaagctcagttgggccatacgaaagttcgaccgggccgggctggcccactggg 53303785  T
Q  265 ctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||    
T  53303786 ctttgggccggcccattggcccat 53303809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 9145379 - 9145299
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggc 242  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||| |||||||||||||    
T  9145379 gggccgggcctaaaaaactaaccaaaaaatgcactcaggctttttcggcccaggcccatttgggccatacaaaagttgggc 9145299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 24425923 - 24426032
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatattttt-----gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||||||||||||||| |||||||||||     |||||||||||  ||||||||||||||||||| |||||||||||  |||||||    
T  24425923 tagagctgtcaaaaatgggccggcccattggcccatatttttgggtcgggccgggcct--aaaactaaccaaaaaatgcactcgggcttttccggcccaa 24426020  T
Q  215 gcccatttgggc 226  Q
    ||| ||||||||    
T  24426021 gccaatttgggc 24426032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 42591005 - 42591136
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcct------aaaaaactaaccaaaaaatgcgctcgggcttttttggccca 213  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||| ||||||       ||||||||||||||||   || |||||||||||| |||||     
T  42591005 tagaggtgtcaaaaatgggccggcccattggcccatattgttgggtcgggccggacctaaaaaaactaaccaaaac--gcactcgggctttttcggcccg 42591102  T
Q  214 agcccatttgggccagacaaaagttgggccgggc 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  42591103 agcccatttgggccatacaaaagttgggccgggc 42591136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 33775164 - 33775104
Alignment:
Q  151 cccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcc 211  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  33775164 cccatatttttgggccgggcctaaaaaactaaccaaaaaacgcactcgggctttttcggcc 33775104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 25630983 - 25630939
Alignment:
Q  244 gggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  25630983 gggccgggctggcccaccgggctttgggccggcccattagcccat 25630939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 55140075 - 55140132
Alignment:
Q  189 aatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggc 247  Q
    ||||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  55140075 aatgcactcgggctttttcggcccaagcccatttgggccatac-aaagttgggccgggc 55140132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 33775103 - 33775050
Alignment:
Q  230 acaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||     ||||||||||||||||||||||||||||| ||||||    
T  33775103 acaaaagttgggccgggc-----tggcccaccgggctttgggccggcccattagcccat 33775050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 24426032 - 24426072
Alignment:
Q  248 cgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  24426032 cgggctggcccaccggactttgggccggcccatttgcccat 24426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 7956166 - 7956107
Alignment:
Q  119 ttagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaa 178  Q
    |||||||||||||||| ||| |||||||||| ||||  |||||||| ||||||| |||||    
T  7956166 ttagagctgtcaaaaacggggcggcccattggcccaattttttgggtcgggcctcaaaaa 7956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 9145418 - 9145390
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccatt 148  Q
    |||||||||||||||||||||||||||||    
T  9145418 tagagctgtcaaaaatgggccggcccatt 9145390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 5154273 - 5154119
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5154273 atgggccggcccattggcccatatttttgggccgggcctaaaaaactaacaaaaaaatgcgctcgggctttttcggcccaagcccatttgggccagacaa 5154174  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5154173 aagttgggccgggccgggctggcccaccgggctttgggccggcccattgacccat 5154119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 26520035 - 26519876
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26520035 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaaccaaaaaatgcgctcgggctttttcggcccaagcccatttgggcca 26519936  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26519935 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 26519876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 31198951 - 31198783
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||    
T  31198951 tagagctgtcaaaaatgggccggcacattggcccatatttttgggccgggcctaaaaaactaacaaaaaaatgcactcgggttttttcggcccaagccca 31198852  T
Q  220 tttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||| | ||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||    
T  31198851 tttgggccataaaaaagttgggttgggccgggctggcccgccgggctttggcctggcccattggcccat 31198783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 29579554 - 29579713
Alignment:
Q  134 atgggccggcccattgacccatatttttgggcc-----gggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||||||||||||  |||||||||||||||     |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  29579554 atgggccggcccattgggccatatttttgggccaggccgggcctaaaaaactaagcaaaaaatgtgctcgggctttttcggcccaagcccatttgggcca 29579653  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29579654 gacaaaagttgggccgggcggggctggcccaccgggctttgggccggcccattggcccat 29579713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 8223311 - 8223158
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| || || ||||||||| ||||||||||||||| ||||| ||||    
T  8223311 atgggccggcacattggcccatatttttgggccgggcctaaaaaactaac-aaaaaacgcacttgggctttttcggcccaagcccattttggccatacaa 8223213  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||  |||| ||||||||||||| |||||||||||||||||| ||||||    
T  8223212 aagttgggctaggccaggctggcccaccgagctttgggccggcccattagcccat 8223158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 35825387 - 35825503
Alignment:
Q  134 atgggccggcccattgacccatatttttgggc-----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35825387 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 35825486  T
Q  229 gacaaaagttgggccgg 245  Q
    ||||||||| |||||||    
T  35825487 gacaaaagtagggccgg 35825503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 126 - 288
Target Start/End: Complemental strand, 21070223 - 21070062
Alignment:
Q  126 tgtcaaaaatgggccggcccattgacccatatttttg-----ggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccat 220  Q
    ||||||||||||| |||||||||||||||||||||||     |||||||||||||||||||| |||||||||| | ||||||||||  ||||||||||||    
T  21070223 tgtcaaaaatgggtcggcccattgacccatatttttgagtcgggccgggcctaaaaaactaatcaaaaaatgcacccgggctttttcagcccaagcccat 21070124  T
Q  221 ttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||| || ||||||     ||| ||||||||||||||||||||||||| |||||||| ||||||    
T  21070123 ttgggccatac-aaagtt-----ggggcgggctggcccaccgggctttgggctggcccattagcccat 21070062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 44745825 - 44745703
Alignment:
Q  161 tgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccac 260  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||     | | ||| |||||||||    
T  44745825 tgggccgggcctaaaaaactaaccaaaaaatgcactcgggctttttcggcccaagcccatttgggccatacaaaagtt-----gagtcggactggcccac 44745731  T
Q  261 cgggctttgggccggcccattggcccat 288  Q
    ||| ||||||||||||||||| ||||||    
T  44745730 cggactttgggccggcccattagcccat 44745703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 48814705 - 48814595
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||| | || |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||    
T  48814705 atgggccggcccatgggcctatatttttgggccgggcctataaaactaaccaaaaa-tgcactcgggctttttcggcccaagcccatttgggccatacaa 48814607  T
Q  234 aagttgggccgg 245  Q
    ||||||||||||    
T  48814606 aagttgggccgg 48814595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 50579409 - 50579293
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgg-----gcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| ||||||||||||||||||     ||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||    
T  50579409 atgggccggcccattggcccatatttttgggccggatcgggcctaaaaaactaataaaaaaatgcactcgggtttttttggcccaagcccatttgggcca 50579310  T
Q  229 gacaaaagttgggccgg 245  Q
     ||||||||||||||||    
T  50579309 tacaaaagttgggccgg 50579293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 26003685 - 26003580
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccggg 264  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||          ||||||||||||||||    
T  26003685 ccgggcctaaaaaactaacgaaaaaatgcactcgggcttttttggcccaagcccatttggaccatacaaaaatt----------gggctggcccaccggg 26003596  T
Q  265 ctttgggccggcccat 280  Q
    ||||||||||||||||    
T  26003595 ctttgggccggcccat 26003580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 34968391 - 34968311
Alignment:
Q  161 tgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttggg 241  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  34968391 tgggtcgggcctaaaaaactaacaaaaaaatgcactcgggctttttcggcccaagcccatttgggccatacaaaagttggg 34968311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 36368646 - 36368759
Alignment:
Q  170 cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttg 269  Q
    |||||||||||||| ||||||||| |  ||| ||||| ||||||||||||||||||||| ||||| |||     |||||||||||||||| |||||||||    
T  36368646 cctaaaaaactaacaaaaaaatgcacctgggttttttcggcccaagcccatttgggccatacaaaggtt-----gggccgggctggcccatcgggctttg 36368740  T
Q  270 ggccggcccattggcccat 288  Q
    |||||||||||| ||||||    
T  36368741 ggccggcccattagcccat 36368759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 4447243 - 4447358
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||| ||||| |||||||||||||| ||||     |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |    
T  4447243 atgggccggctcattggcccatatttttgggtcgggacgggcctaaaaaactaaccaaaaaatgcactcgggctttttcgacccaagcccatttgggcta 4447342  T
Q  229 gacaaaagttgggccgggc 247  Q
       ||||||||||||||||    
T  4447343 ---aaaagttgggccgggc 4447358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 13982680 - 13982556
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggc----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaag 215  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| |    |||||||||||||||||||||||||| | ||||| | ||||  ||||| |    
T  13982680 tagagctgtcaaaaatgggctggcccattggcccatatttttggacagttcgggcctaaaaaactaaccaaaaaatacactcggac-ttttcagcccatg 13982582  T
Q  216 cccatttgggccagacaaaagttggg 241  Q
    | ||||||||||| ||||||||||||    
T  13982581 ctcatttgggccatacaaaagttggg 13982556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 7025850 - 7025938
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgg 250  Q
    |||||||||||||||||| ||| ||||||||| ||| |||||||| |||||||| |||||||| ||| ||||||||||| |||||||||    
T  7025850 gggccgggcctaaaaaacgaacaaaaaaatgcactcaggctttttcggcccaagtccatttggcccatacaaaagttggaccgggccgg 7025938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 38614482 - 38614391
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttggg 225  Q
    ||||||||| | |||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||  ||||||||| ||||||||    
T  38614482 atgggccggtctattggcccatatttttgggtcgggcttaaaaaactaaccaaaaaatgcactcgggctcttacggcccaagctcatttggg 38614391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 24672734 - 24672687
Alignment:
Q  164 gccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcc 211  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  24672734 gccgggcctaaaaaactaacccaaaaatgcactcgggcttttttggcc 24672687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 10923818 - 10923875
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccat 220  Q
    ||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||    
T  10923818 gggccgggcctaaaaaactaacc-aaaaatgcacttgggctttttcggcccaagcccat 10923875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 37573425 - 37573503
Alignment:
Q  202 ttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    ||||||||||||| ||||||||| ||| ||||||  ||||  |||||||||||  ||| ||||||||||||||| |||||    
T  37573425 ttttttggcccaaacccatttgg-ccatacaaaaaatgggttgggccgggctgttccatcgggctttgggccggtccatt 37573503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 1356822 - 1356888
Alignment:
Q  220 tttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggccc 286  Q
    ||||| ||| || ||||||||| ||| |||| |||||||| ||||||||||| ||||||||| ||||    
T  1356822 tttggcccatacgaaagttgggtcggaccggactggcccatcgggctttgggacggcccattagccc 1356888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 1356731 - 1356824
Alignment:
Q  118 attagagctgtcaaaaatgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttt 206  Q
    ||||||| |||||||||||| ||| || |||| |||||  ||||||||||||     ||| |||||||| || |||||||| ||||||||||||    
T  1356731 attagagttgtcaaaaatggaccgacctattggcccatgcttttgggccgggtcgggcctgaaaaactagcccaaaaatgcactcgggcttttt 1356824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 31845891 - 31846050
Alignment:
Q  134 atgggccggcccattgacccatatttttggg-----ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||| |||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  31845891 atgggccagcccattgacccatatttttgggtcgggccgggcctaaaaaactaacaaaaaaatgcgctcgggctttttcggcccaagcccatttgggcca 31845990  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31845991 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 31846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 28185051 - 28185219
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgg-----gcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||| |||||||    
T  28185051 tagagctgtcaaaaatgggccggcccattggcccatatttttgggccggaccgggcctaaaaaactaaccaaaaaatgcactcgggctttttcggcccaa 28185150  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| | |||||||     ||| || ||||||||||||||||||||||||||||||||||||||    
T  28185151 gcccatttgggccataaaaaagtt-----gggtcgagctggcccaccgggctttgggccggcccattggcccat 28185219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 49269368 - 49269214
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||||| |||||| |||||||||||| ||||||     ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  49269368 atgggccggtccattggcccatatttttgagccgggttgggcctaaaaaactaaccaaaaaatgtgctcgggctttttcggcccaagcccatttgggcca 49269269  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  49269268 gacaaaagttgggcc-----gggctggcccaccgggctttgggccggcccattggcccat 49269214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 13391106 - 13391255
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  13391106 atgggccagcctattggcccatatttttgggccgggcctaaaaaactaatgaaaaaatgcactcgggcttttttggcccaagcccatttgggccatacaa 13391205  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    || ||||||||||||     |||||||| ||||||||||||||||||||||||||    
T  13391206 aaattgggccgggcc-----ggcccaccaggctttgggccggcccattggcccat 13391255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 1763995 - 1763844
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| | ||    
T  1763995 atgggccggcccattagcccatatttttgggccgggactaaaaaactaaccaaaaa-tgcactcgggctttttcggcccaagcccatttgggccataaaa 1763897  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||| || |||||||||||| ||| |||||||||||||||||||    
T  1763896 aagttgggccgggcctgg-tggcccaccggg-ttttggccggcccattggcccat 1763844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 28973119 - 28972951
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||||||     |||||||||||||||||||||| |||||| ||||| |||||||    
T  28973119 tagagctgtcaaaaatgggccggcctattggcccatatttttgagccgggccggacctaaaaaactaaccaaaaaatgcactcggggtttttcggcccaa 28973020  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| |||||||||||| |||||     || |||||||||||||||||||||||||| ||||||    
T  28973019 gcccatttgggccatacaaaagttgggtcgggc-----tgacccaccgggctttgggccggcccattagcccat 28972951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 48080553 - 48080664
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  48080553 atgggccggcccattggcccatatttttgggtcgggcctaaaaaactaaccaaaaaatgcgctcgggctttttcagcccaagcccatttgggctagacaa 48080652  T
Q  234 aagttgggccgg 245  Q
    ||||||||||||    
T  48080653 aagttgggccgg 48080664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 55826192 - 55826067
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 261  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  55826192 gggccggccctaaaaaactaaccaaaaaatgcactcgggctttttcggcccaagcccatttgggccataaaaaagttgggccggg-cgggctggcccacc 55826094  T
Q  262 gggctttgggccggcccattggcccat 288  Q
    | ||||||||||||||||||| |||||    
T  55826093 gagctttgggccggcccattgacccat 55826067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 6377043 - 6377210
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||||     |||||||||||| ||||||||| |||||||||||| |||||||    
T  6377043 tagagctgtcaaaaatggaccggctcattggcccatatttttgggccgggccgggcctaaaaaactaac-aaaaaatgcactcgggctttttcggcccaa 6377141  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| | ||||||||||||||||     | ||||| ||||||||||||||||||||||||||||    
T  6377142 gcccatttgggccataaaaaagttgggccgggc-----tagcccaacgggctttgggccggcccattggcccat 6377210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 7878691 - 7878580
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||    
T  7878691 atgggctggcccattggcccatatttttgggccgggcctaaaaaactaaccaaaaaatgaactcgggctttttcggcccaagcccatttgggccatacaa 7878592  T
Q  234 aagttgggccgg 245  Q
    ||||||||||||    
T  7878591 aagttgggccgg 7878580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 55762384 - 55762267
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 261  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  55762384 gggccggccctaaaaaactaaccaaaaaatgcactcgggctttttcggcccaagcccatttgggccataaaaaagttgggccggg-cgggctggcccacc 55762286  T
Q  262 gggctttgggccggcccat 280  Q
    | |||||||||||||||||    
T  55762285 gagctttgggccggcccat 55762267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 34487442 - 34487591
Alignment:
Q  134 atgggccggcccattgacccatatttttgg-----gccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||     |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  34487442 atgggccggcccattggcccatatttttggaccgggccgggcctaaaaaactaacgaaaaaatgcactcgggcttttttggcccaagcccatttgggcca 34487541  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||          |||| |||||||||| ||||||||||||||||||||||||    
T  34487542 tacaaaagtt----------gggcgggcccaccggactttgggccggcccattggcccat 34487591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 51549455 - 51549604
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||| |  ||||||||  ||||||| ||||||||||||| ||||    
T  51549455 atgggccggtccattggcccatatttttgggtcgggcctaaaaaactaacaaaaaaatgcacctgggcttttacggcccaatcccatttgggccatacaa 51549554  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||| ||| ||     |||||||||||||||||||||| ||||||||||||    
T  51549555 aagttgggtcggccc-----ggcccaccgggctttgggccggtccattggcccat 51549604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 7069315 - 7069468
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||| |||| |||| |||||||||||||||||||     |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  7069315 atgggctggccaattggcccatatttttgggccgggtcgggcctaaaaaactaaccaaaaa-tgcactcgggctttttcggcccaagcccatttgggcca 7069413  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     | |||||||     |||||| ||||| |||||||||||||||||||| |||||||||||    
T  7069414 taaaaaagtt-----gggccgagctgggccaccgggctttgggccggcacattggcccat 7069468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 11509159 - 11509244
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggc 247  Q
    |||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11509159 gggctgggcctaaaaaactaactaaaaaacgcactcgggcttttttggcccaagcccatttgggccatacaaaagttgggccgggc 11509244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 41235585 - 41235740
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggctttttt-ggcccaagcccatttgggcc 227  Q
    |||||||||||||||| | |||||||||||||||||     |||||||||||||| ||||||||  |||||| |||||  ||||||||||||||||||||    
T  41235585 atgggccggcccattggctcatatttttgggccgggttgggcctaaaaaactaacaaaaaaatgtactcgggttttttccggcccaagcccatttgggcc 41235684  T
Q  228 agacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    | |||||||||     |||||||||||| |||| || ||||||||||||||||| ||||||    
T  41235685 atacaaaagtt-----gggccgggctggtccactggactttgggccggcccattagcccat 41235740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 42384292 - 42384179
Alignment:
Q  168 ggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctt 267  Q
    ||||||| |||||||||| ||||||| |||||||||||| |  ||||| |||||||||||| |||||||||| | ||| | |||||||||||||||||||    
T  42384292 ggcctaagaaactaaccacaaaatgcactcgggctttttcgatccaagtccatttgggccatacaaaagttgtggcggactgggctggcccaccgggctt 42384193  T
Q  268 tgggccggcccatt 281  Q
    |||| |||||||||    
T  42384192 tgggtcggcccatt 42384179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 18732556 - 18732684
Alignment:
Q  126 tgtcaaaaatgggccggcc-cattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgg 224  Q
    ||||||||||||| ||| | ||| | |||||||||||| | |||| ||||||||  ||||||||||| |  ||||||||||| |||||||||||||||||    
T  18732556 tgtcaaaaatgggtcgggctcatgggcccatatttttgtgtcgggtctaaaaaataaaccaaaaaatacattcgggctttttcggcccaagcccatttgg 18732655  T
Q  225 gccagacaaaagttgggccgggccgggct 253  Q
    |||| |||||| |||||| ||||||||||    
T  18732656 gccatacaaaaattgggctgggccgggct 18732684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 32352633 - 32352524
Alignment:
Q  116 tgattagagctgtcaaaaa-tgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||||||| ||||| |||| |||||||||  |||||| |||||| | ||||||||||||| | ||||||||  | |||||||| |||||||||||    
T  32352633 tgattagagctgtaaaaaaatgggtcggcccattagcccataattttggacagggcctaaaaaacaagccaaaaaacacactcgggctattttggcccaa 32352534  T
Q  215 gcccatttgg 224  Q
    ||||||||||    
T  32352533 gcccatttgg 32352524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 47461789 - 47461866
Alignment:
Q  168 ggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgg 245  Q
    ||||||||||||||  | ||||| || |||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  47461789 ggcctaaaaaactagtccaaaaacgcactcgggcttttttggcccaagcccatttggtccatacaaaatttgggccgg 47461866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 36505653 - 36505538
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cct-aaaaaactaa-ccaaaaaatgcgctcgggcttttttggcccaagcccatttgggc 226  Q
    |||| |||||||||| | ||||||||||||| ||||     ||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||  |    
T  36505653 atggtccggcccatttatccatatttttgggtcgggctggacctaaaaaaactaacccaaaaaatgcactcgggcttttttgacccaagcccatttgatc 36505554  T
Q  227 cagacaaaagttgggc 242  Q
    || |||||||||||||    
T  36505553 catacaaaagttgggc 36505538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 13051674 - 13051595
Alignment:
Q  133 aatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggccca 213  Q
    |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||| || ||||||||  | ||||||||||||||||    
T  13051674 aatgggccggcctattaacctatatttt-gggtcgggcctaaaaagctagcctaaaaatgcaatagggcttttttggccca 13051595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 48847743 - 48847703
Alignment:
Q  241 gccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  48847743 gccgggccgggccggcccatcgggcttcgggccggcccatt 48847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 147580 - 147706
Alignment:
Q  162 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  147580 gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccacc 147679  T
Q  262 gggctttgggccggcccattggcccat 288  Q
    ||| |||||||||||||||||||||||    
T  147680 gggatttgggccggcccattggcccat 147706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 32455393 - 32455567
Alignment:
Q  119 ttagagctgtcaaaaatgggccggcccattgacccatatttttg-----ggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggccca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||||||||| |||||  |||||  |||||    
T  32455393 ttagagctgtcaaaaatgggccggcccattgacccatatttttgaaccggaccgggcctaaaaaactaacaaaaaaatgcactcggattttttcagccca 32455492  T
Q  214 agcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||    
T  32455493 agcccatttgggccatacaaaagttgggtcgggcggggctggcccactgggctttgggccggcccattagcccat 32455567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 29646597 - 29646748
Alignment:
Q  134 atgggccggcccattgacccatatttttgggc-----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||||| |||||| |||||||||||||||     |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  29646597 atgggccggtccattggcccatatttttgggccgggccgggcctaaaaaactaacaaaaaaatgcactcgggctttttcggcccaagcccatttgggcca 29646696  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccat 280  Q
     | |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  29646697 taaaaaagttgggccgggccgggctggcccagcaggctttgggccggcccat 29646748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 46510756 - 46510590
Alignment:
Q  119 ttagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggccca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||| |||||| ||||| |  |||    
T  46510756 ttagagctgtcaaaaatgggccggcccattgacccatatttttaggccgggccaggcctaaaaaactaaccaaaaaatgcactcgggatttttcgatcca 46510657  T
Q  214 agcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccat 280  Q
    ||||||||||||||| |||||||||||  ||||||||||||| | | ||||||||| ||||||||||    
T  46510656 agcccatttgggccatacaaaagttggatcgggccgggctggtcaatcgggctttgtgccggcccat 46510590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 8242081 - 8242229
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||  |||    
T  8242081 atgggccggcccattggcccatagttttgggtcgggcctaaaaaactaacgaaaaa-tgcactcgggcttttttggcccaagcccatttgggccattcaa 8242179  T
Q  234 aagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||     |||||||||||||||| |||||||||| |||||||||||||||||    
T  8242180 aagtt-----gggccgggctggcccaacgggctttggaccggcccattggcccat 8242229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 25942402 - 25942569
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||     |||||||||||||| ||||||||| ||||||||||||||||||||    
T  25942402 tagagctgtaaaaaatggaccggcccattgacccatatttttgggccgggtcgggcctaaaaaactaac-aaaaaatgcactcgggcttttttggcccaa 25942500  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||||||||| || ||||||||||||| || |     |||||||| |||||||||||||||||||| ||||||    
T  25942501 gcccatttggggcatacaaaagttgggctggcc-----tggcccactgggctttgggccggcccattagcccat 25942569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 10361092 - 10361209
Alignment:
Q  166 cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggc 265  Q
    |||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||| |||||||||      |||||||||||||||||||||    
T  10361092 cgggcctaaaaaactaaccaaaaaatgcacccgggctttgtcggcccaagcccatttgggccatacaaaagtt-----aggccgggctggcccaccgggc 10361186  T
Q  266 tttgggccggcccattggcccat 288  Q
    |||||||||||||||| ||||||    
T  10361187 tttgggccggcccattagcccat 10361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 13932811 - 13932692
Alignment:
Q  134 atgggccggcccattgacccatatttttgg-----gccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| || ||||||||||     |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  13932811 atgggccggcccattggccaatatttttggaccgggccgggcctaaaaaactaactaaaaaatgcactcgggctttttcggcccaagcccatttgggcca 13932712  T
Q  229 gacaaaagttgggccgggcc 248  Q
     ||||||||||| |||||||    
T  13932711 tacaaaagttggtccgggcc 13932692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 19348046 - 19347881
Alignment:
Q  122 gagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagc 216  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||||||     |||||||||||| ||||||||  |||||||||||| |||| ||||    
T  19348046 gagctgtcaaaaatgggccggcctatcggcccatatttttaggccgggccggacctaaaaaactaac-aaaaaatgtactcgggctttttcggcctaagc 19347948  T
Q  217 ccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||| |||||||||||||||||      ||| |||||||||||| |||||||||||| ||||||    
T  19347947 ccatttgggccatacaaaagttgggccgggt-----tggtccaccgggctttaggccggcccattagcccat 19347881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 45261339 - 45261456
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccggg 264  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |     || |||||||||    
T  45261339 ccgggcctaaaaaactaacgaaaaaatgcactcgggcttttttggcccaagcctatttgggccatacaaaagttgggccggac-----tgacccaccggg 45261433  T
Q  265 ctttgggccggcccattggcccat 288  Q
    |||| |||||||||||||||||||    
T  45261434 cttt-ggccggcccattggcccat 45261456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 11910790 - 11910870
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgg 245  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||||    
T  11910790 ccgggcctaaaaaactaaccaaaaaatgcactcgggttttttcggcccaagcccatttgggccatacaaaagttgggccgg 11910870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 297752 - 297639
Alignment:
Q  151 cccatatttttgggc-----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgg 245  Q
    |||||||||||||||     |||||||||||||||| || |||||  | |||| |||||||||||||||||| || ||| ||| |||| | ||||  |||    
T  297752 cccatatttttgggcccggtcgggcctaaaaaactagcccaaaaacacactcgagcttttttggcccaagcctatctggcccatacaataattggatcgg 297653  T
Q  246 gccgggctggccca 259  Q
    ||||||| ||||||    
T  297652 gccgggccggccca 297639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 34080015 - 34080083
Alignment:
Q  166 cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaa 235  Q
    |||||||||||||||| || |||||||| || |||| |||||||||||| ||||| ||| ||| ||||||    
T  34080015 cgggcctaaaaaactagcccaaaaatgcacttgggc-tttttggcccaaacccatgtggcccatacaaaa 34080083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 3587161 - 3587329
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcct-----aaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||      ||||||||||||||||||||| ||||||||||||||||||||    
T  3587161 tagagctgtcaaaaatgggccggcccattggccgatatttttgggccgggccgggccaaaaaaactaaccaaaaaatgcactcgggcttttttggcccaa 3587260  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| |||||||||     ||| ||||||||||||||||||||||||| |||||||| ||||||    
T  3587261 gcccatttgggccatacaaaagtt-----gggtcgggctggcccaccgggctttgggctggcccattagcccat 3587329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 12569603 - 12569435
Alignment:
Q  120 tagagctgtcaaaaatgggccggcc-cattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccc 218  Q
    ||||| ||||||||||||||||| | ||| | |||||||||||||||| | |||||||||||||| ||||||||| | |||||||||  |||||||||||    
T  12569603 tagaggtgtcaaaaatgggccgggctcatgggcccatatttttgggccagacctaaaaaactaacaaaaaaatgcacccgggcttttc-ggcccaagccc 12569505  T
Q  219 atttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  12569504 atttgggccatacaaaatttaggtcgggccgggctggcccaccgggctttgggccggcccattagcccat 12569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 9651140 - 9651046
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggccca 259  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  9651140 ccgggcctaaaaaactaaccaaaaaatgcactcgggctttttcggcccaagcccatttgggccataaaaaagttgggccgggccgggctggccca 9651046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 3237612 - 3237485
Alignment:
Q  161 tgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccac 260  Q
    ||||||||  |||||||||||| |||||||||| |||||||||||| ||| |||||||| |||||||| |||||||||||| ||||||||||||||| ||    
T  3237612 tgggccggttctaaaaaactaaacaaaaaatgcactcgggctttttcggctcaagcccacttgggccatacaaaagttgggtcgggccgggctggccaac 3237513  T
Q  261 cgggctttgggccggcccattggcccat 288  Q
    ||  ||||||| ||||||||| ||||||    
T  3237512 cgaactttgggtcggcccattagcccat 3237485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 25325311 - 25325171
Alignment:
Q  123 agctgtcaaaaatgggcc-ggcccattgacccatattttt-----gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagc 216  Q
    |||||||||||||||||| ||| ||| | |||||||||||     || |||||||||||||||||||  |||||||| |||||||||||||| |||||||    
T  25325311 agctgtcaaaaatgggccgggctcatgggcccatatttttaggccggaccgggcctaaaaaactaac--aaaaatgcactcgggcttttttgacccaagc 25325214  T
Q  217 ccatttgggccagacaaaagttgggccgggccgggctggccca 259  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  25325213 ccatttgggccatacaaaagttggggcgggccgggctggccca 25325171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 42807958 - 42808112
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggc----ctaaaaaactaaccaaaaaatgcgctcgggctttttt-ggcccaagcccatttgggcca 228  Q
    ||||| |||||||||| || ||||||||||||||| |    ||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||    
T  42807958 atgggtcggcccattggcctatatttttgggccggacggacctaaaaaactaaccaaaaaatgcactcgggcttttttcggtctaagcccatttgggcca 42808057  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||||||| | |     ||||||||||||||||||||||||||||| ||||||    
T  42808058 tacaaaagttgggccagcc-----tggcccaccgggctttgggccggcccattagcccat 42808112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 11706659 - 11706543
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccg-----ggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||||  |||||||||||| |||||||||||     || ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  11706659 atgggccgatccattgacccatgtttttgggccgaaccgggtctaaaaaactaaccaaaaaatgcactcggggttttttggcccaagctcatttgggcca 11706560  T
Q  229 gacaaaagttgggccgg 245  Q
     |||||| |||| ||||    
T  11706559 tacaaaatttggcccgg 11706543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 44088536 - 44088397
Alignment:
Q  120 tagagctgtcaaaaatgggccg-gcccattgacccatatttttgggccgggc-----ctaaaaaactaaccaaaaaatgcgctcgg---gcttttttggc 210  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||||||     ||||||||||| || |||||||| |||||     |||||||||    
T  44088536 tagagctgtcaaaaatgggtcgagcccattggcccatatttttgggccgggccgggtctaaaaaactagcccaaaaatgcactcggtttttttttttggc 44088437  T
Q  211 ccaagcccatttgggccagacaaaagttgggccgggccgg 250  Q
    |||||||||||| ||  | |||||||||||||||||||||    
T  44088436 ccaagcccattttggttatacaaaagttgggccgggccgg 44088397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 26827546 - 26827427
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgg-----gcctaaaaaactaaccaaa-aaatgcgctcgggcttttttggcccaagcccatttgggcc 227  Q
    |||||||||||||||| || || ||||||||||||     ||||||||||||||||||| |||||| |||||| |||||  |||||||| ||||||||||    
T  26827546 atgggccggcccattggccaatgtttttgggccggaccgggcctaaaaaactaaccaaataaatgcactcggggtttttcagcccaagctcatttgggcc 26827447  T
Q  228 agacaaaagttgggccgggc 247  Q
    | |||||| |||||||||||    
T  26827446 atacaaaatttgggccgggc 26827427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 4185273 - 4185351
Alignment:
Q  210 cccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||| |||||||||||| |||||||||||||||| ||||| |||| ||||||||||||| |||||||||| ||||||    
T  4185273 cccaagtccatttgggccatacaaaagttgggccggaccgggttggctcaccgggctttggaccggcccattagcccat 4185351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 33907217 - 33907140
Alignment:
Q  168 ggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgg 245  Q
    |||||||||||||||||||||||||| |||||| |||||  |||||||| ||||||||||| |||||| |||||||||    
T  33907217 ggcctaaaaaactaaccaaaaaatgcactcggggtttttctgcccaagctcatttgggccatacaaaatttgggccgg 33907140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 4158670 - 4158750
Alignment:
Q  134 atgggccggcccattgacccatatttttgggc-----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttgg 209  Q
    |||||||||||||||| |||||||||||||||     |||||||||||||||||| ||||||||| |||||||||||||||    
T  4158670 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaacgaaaaaatgcactcgggcttttttgg 4158750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 4185228 - 4185271
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgg 163  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  4185228 tagagctgtcaaaaatgggccggcccattgatccatatttttgg 4185271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 44088632 - 44088712
Alignment:
Q  133 aatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggccca 213  Q
    |||||||||||||||||  ||| | |||||||| |||||| |||||||| ||  ||||  | || ||||||||||||||||    
T  44088632 aatgggccggcccattggtccacaattttgggctgggcctcaaaaactagccccaaaacacacttgggcttttttggccca 44088712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 58202 - 58329
Alignment:
Q  161 tgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccac 260  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  58202 tgggccgggcctagaaaactaacaaaaaaatgcactcgggctttttcggcccaagcccatttgggccatacaaaagttgggccgggtcgggctggcccac 58301  T
Q  261 cgggctttgggccggcccattggcccat 288  Q
    ||||||||||||||||||||| ||||||    
T  58302 cgggctttgggccggcccattagcccat 58329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 49452 - 49620
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||     |||||||||||||| ||||||||| |||||| ||||| |||||||    
T  49452 tagagctgtcaaaaatgggccggcccattggcccatatttttgggccgggacgggcctaaaaaactaactaaaaaatgcactcggggtttttcggcccaa 49551  T
Q  215 gcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||| |||||||||||| |||||     || |||||||||||||||||||||||||| ||||||    
T  49552 gcccatttgggccatacaaaagttgggtcgggc-----tgacccaccgggctttgggccggcccattagcccat 49620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 27126598 - 27126711
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaa 233  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  27126598 atgggccggcccattggctcatatttttgggtcgggcctaaaaaactaaccaaaaaatgcgctcgggttttttcggcccaagcccatttgggccagacaa 27126697  T
Q  234 aagttgggccgggc 247  Q
    ||||||||||||||    
T  27126698 aagttgggccgggc 27126711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 2612697 - 2612543
Alignment:
Q  134 atgggccggcccattgacccatattttt-----gggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||     |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  2612697 atgggccggcccattggcccatattttttggccgggccgggcctaaaaaactagccaaaaaatgcactcgggctttttcggcccaagcccatttgggcca 2612598  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     | |||||||     |||| |||||||||||||||||||||| |||||||||||||||||    
T  2612597 taaaaaagtt-----gggctgggctggcccaccgggctttggaccggcccattggcccat 2612543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 39584855 - 39584993
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    ||||| |||||||||||||| || |||| | ||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||| ||||||||||||    
T  39584855 tagagttgtcaaaaatgggctggtccatcggcccatatttttgggccgggcctaaaaaaccaac-aaaaaatgcattcgggctttttcggcccaagccca 39584953  T
Q  220 tttgggccagacaaaagttgggccgggccgggctggccca 259  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  39584954 tttgggccatacaaaagttgggccgggccggactggccca 39584993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 26741263 - 26741374
Alignment:
Q  170 cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggctttg 269  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  26741263 cctaaaaaactaaccaaaaaatgcactcaggctttttcggcccaagcccatttgggacatacaaaagttgggtcgggccgggctggcccaccggactttg 26741362  T
Q  270 ggccggcccatt 281  Q
    ||||||||||||    
T  26741363 ggccggcccatt 26741374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 37698000 - 37698162
Alignment:
Q  121 agagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccat 220  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||   |||||||||  | ||||| |||||    
T  37698000 agaggtgtcaaaaatgggccggcccattggcccatatttttgggccgggcctaaaaaattaaccaaaaaatgcatccgggcttttccgacccaatcccat 37698099  T
Q  221 ttgggccagacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
    ||||| || || ||||||     ||| |||||||||||||||| ||||||||||||||||| ||||||    
T  37698100 ttgggtcataccaaagtt-----gggtcgggctggcccaccggactttgggccggcccattagcccat 37698162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 15870794 - 15870891
Alignment:
Q  137 ggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaa 234  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||    
T  15870794 ggccggtctattggcccatatttttgggccgggcctaaaaaactaaccaaaaaatgcactcgggcttttttggcccaaacccatttggaccatacaaa 15870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 35917711 - 35917837
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagccca 219  Q
    |||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| || |||||||| |||||| |||||  |||||||||||    
T  35917711 tagagctgtcaaaaatgggctggcccattggcccatatttttaggtcgggcctaaaaaactagcccaaaaatgcactcgggttttttcagcccaagccca 35917810  T
Q  220 tttgggccagacaaaagttgggccgggc 247  Q
    | ||||||| || ||||||||| |||||    
T  35917811 tatgggccatac-aaagttggggcgggc 35917837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 18404809 - 18404894
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgg 250  Q
    ||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  18404809 ccgggcctaaaaaactaaccaaaaaatgcactcaggctttttcggcccaagccgatttgggccatacaaaagttgggccgggccgg 18404894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 6837736 - 6837850
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaa-aactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcc 227  Q
    |||||| ||||||||| |||||||||||||| ||||     ||||||| ||||||| ||||||||| |||  ||||||| ||||||||||||||||||||    
T  6837736 atgggctggcccattggcccatatttttgggtcgggtcgggcctaaaaaaactaactaaaaaatgcactcaagctttttcggcccaagcccatttgggcc 6837835  T
Q  228 agacaaaagttgggc 242  Q
    | |||||||||||||    
T  6837836 atacaaaagttgggc 6837850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 35596465 - 35596385
Alignment:
Q  167 gggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggc 247  Q
    |||||||||||||||| |||||||||  || || |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  35596465 gggcctaaaaaactaaacaaaaaatgtactgggactttttcggcccaagcccaattgggccatacaaaagttgggccgggc 35596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 44599457 - 44599341
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgg-----gcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||| |||| |||||| ||||| ||||||||||||     ||||||||||||||||||||||||| |||||| ||||| ||||||||| ||| |||||||    
T  44599457 atggaccggtccattggcccatgtttttgggccggactgggcctaaaaaactaaccaaaaaatgcactcggggtttttcggcccaagctcatctgggcca 44599358  T
Q  229 gacaaaagttgggccgg 245  Q
     | |||| |||||||||    
T  44599357 taaaaaatttgggccgg 44599341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 7990353 - 7990296
Alignment:
Q  186 aaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggcc 243  Q
    |||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  7990353 aaaaatgcactcgggctttttcggcccaagcctatttgggccatacaaaagttgggcc 7990296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 26909997 - 26909929
Alignment:
Q  184 caaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggct 253  Q
    |||||||||| |||||||||||  | ||||||||||||||||||| |||||||||||| ||| |||||||    
T  26909997 caaaaaatgcactcgggcttttcag-cccaagcccatttgggccatacaaaagttgggtcggtccgggct 26909929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 41428022 - 41427954
Alignment:
Q  152 ccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccat 220  Q
    |||||||||||| ||||||||||||||||| || |||||  |  ||| |||||||||| ||||||||||    
T  41428022 ccatatttttggaccgggcctaaaaaactagcccaaaaactcattcgagcttttttggtccaagcccat 41427954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 1386655 - 1386693
Alignment:
Q  243 cgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  1386655 cgggccgggctggcccatcgggctttgggccagcccatt 1386693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 27126706 - 27126734
Alignment:
Q  260 ccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||||||||||||||||    
T  27126706 ccgggctttgggccggcccattggcccat 27126734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 34677223 - 34677095
Alignment:
Q  161 tgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttgg-cccaagcccatttgggccagacaaaagttgggccgggccgggctggccca 259  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  34677223 tgggtcgggcctaaaaaactaaacaaaaaatgcactcgggcttttttgggcccaagcccatttgggccatacaaaagttgggccaggcggggctggccca 34677124  T
Q  260 ccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||||||||| ||||||    
T  34677123 ccgggctttgggccggcccattagcccat 34677095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 30044230 - 30044098
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggccg-----ggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||||| |||||| ||||| |||||||    
T  30044230 tagagctatcaaaaatgggccggcccattggcccatatttttgggccgagacgggcctaaaaaactaaccaaaaaatgcactcggggtttttcggcccaa 30044131  T
Q  215 gcccatttgggccagacaaaagttgggccgggc 247  Q
    |||||||||||||| |||||||||||| |||||    
T  30044130 gcccatttgggccatacaaaagttgggtcgggc 30044098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 15707247 - 15707361
Alignment:
Q  134 atgggccggcccattgacccatatttttgggc-----cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||||||||||| |||||||||||||||     |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  15707247 atgggccggcccattggcccatatttttgggccgggccgggcctaaaaaactaacaaaaaaatgcactcgggcttttttggcccaagcccatttgggcca 15707346  T
Q  229 gacaaaagttgggcc 243  Q
     ||||||||||||||    
T  15707347 tacaaaagttgggcc 15707361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 2978549 - 2978685
Alignment:
Q  118 attagagctgtcaaaaatgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggccc 212  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||     |||||||||||| ||||||||  ||||||||||||||||||    
T  2978549 attagagctgtcaaaaatgggccggtccattgtcccatatttttgggccggaccgggcataaaaaactaac-aaaaaatgtactcgggcttttttggccc 2978647  T
Q  213 aagcccatttgggccagacaaaagttgggccgggccgg 250  Q
    ||||||||||||| || |||||||||||| ||||||||    
T  2978648 aagcccatttgggtcaaacaaaagttgggtcgggccgg 2978685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 34760334 - 34760464
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||||||| ||||||||||||||||||||||||||     |||||||||||| || ||| | || |||||||||||||||||||| |||||||||||||    
T  34760334 atgggccggtccattgacccatatttttgggccgggttgggcctaaaaaactagcccaaacacgcactcgggcttttttggcccaaccccatttgggcca 34760433  T
Q  229 gacaaaagttgggccgggccgggctggccca 259  Q
     |||||||||||| |||||||||||||||||    
T  34760434 tacaaaagttgggtcgggccgggctggccca 34760464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 11545929 - 11546034
Alignment:
Q  120 tagagctgtcaaaaatgggccggcccattgacccatatttttgggcc-----gggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaa 214  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||     ||||||||||||||| || ||| | || ||||||||||||||||||||    
T  11545929 tagagctgtcaaaaacgggccggcccaatggcccatatttttgggccgggttgggcctaaaaaactagcccaaacacgcactcgggcttttttggcccaa 11546028  T
Q  215 gcccat 220  Q
    ||||||    
T  11546029 gcccat 11546034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 10321545 - 10321386
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||| |||||||  | ||||||||||||||||     |||||||||||| |  |||||| | |  ||| ||||| ||||||| |||||||||| ||    
T  10321545 atgggccgacccattggtctatatttttgggccgggtcgggcctaaaaaactagcacaaaaatacaccggggttttttcggcccaatcccatttgggtca 10321446  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||||||||||| ||||||||| || || ||||||||||| ||||| ||||||    
T  10321445 tacaaaagttgggccgggcagggctggccaactggactttgggccggaccattagcccat 10321386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 32011826 - 32011683
Alignment:
Q  133 aatgggccggcccattgacccatatttttgggccgggcctaaaaaa-ctaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagac 231  Q
    ||||||| ||||||||  |||||||||||||| | ||| ||||||| ||| || |||||||| ||| | |||||||||||||      ||||||||| ||    
T  32011826 aatgggctggcccattagcccatatttttgggtccggcgtaaaaaaactagcccaaaaatgcactcagacttttttggccca------tttgggccatac 32011733  T
Q  232 aaaagttgggccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||||| | |||| |||| ||| ||| |||||||||||||| ||||||    
T  32011732 aaaagttgcgtcgggtcgggttggtccatcgggctttgggccgacccatt 32011683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 6862060 - 6862130
Alignment:
Q  134 atgggccggcccattgacccatatttttg---ggccgggcctaaaaaactaaccaaaaaatgcgctcgggc 201  Q
    |||||||||||||||| |||||||||  |   |||||||||||||||| |||||||||||||| |||||||    
T  6862060 atgggccggcccattggcccatatttgggcggggccgggcctaaaaaattaaccaaaaaatgcactcgggc 6862130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21038837 - 21038801
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggc 170  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  21038837 atgggccggcccattggcccatatttttggtccgggc 21038801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 18405696 - 18405854
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    |||||||| ||||||| |||||||||||||| ||||     |||||||||||||| ||||||||| ||| ||||||||  |||||||||||||||||||     
T  18405696 atgggccgacccattggcccatatttttgggtcgggtcgggcctaaaaaactaac-aaaaaatgcactcaggctttttcagcccaagcccatttgggccg 18405794  T
Q  229 gacaaaagttgggccgggccgggctggcccaccgggctttgggccggcccattggcccat 288  Q
     |||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||    
T  18405795 tacaaaagttgggccaggccgggctggcacatcgggctttgggccggcccattagcccat 18405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 28210927 - 28210814
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccggg-----cctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||| ||||||||||||||||||||||||| ||||     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28210927 atgggtcggcccattgacccatatttttgggtcgggtcgagcctaaaaaactaaccaaaaaatgcactcgggcttttttggcccaagcccatttgggcca 28210828  T
Q  229 gacaaaagttgggc 242  Q
     |||||||||||||    
T  28210827 tacaaaagttgggc 28210814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 10371421 - 10371303
Alignment:
Q  134 atgggccggcccattgacccatatttttgggccgggcc-----taaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggcca 228  Q
    ||||| |||||||||| |||||||||||||||||||||     |||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  10371421 atggggcggcccattggcccatatttttgggccgggccgggcctaaaaaactaaccagaaaatgtgctcgggctttttcggcccaagctcatttgggcca 10371322  T
Q  229 gacaaaagttgggccgggc 247  Q
    ||||||||||||| |||||    
T  10371321 gacaaaagttgggtcgggc 10371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 34374658 - 34374740
Alignment:
Q  165 ccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggc 247  Q
    |||| |||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||| |||||||||||    
T  34374658 ccggacctaaaaaactaaccaaaaaatgcactcggggtttttcggcccaagctcatttgggccatacaaaatttgggccgggc 34374740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 35540174 - 35540291
Alignment:
Q  166 cgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggcccaccgggc 265  Q
    |||||||||||||||||||||||||||| |||||| |||||   ||||||| | ||||||||| |||||||||     |||||||||||||||| || ||    
T  35540174 cgggcctaaaaaactaaccaaaaaatgcactcggggtttttcaacccaagctcgtttgggccatacaaaagtt-----gggccgggctggcccatcgagc 35540268  T
Q  266 tttgggccggcccattggcccat 288  Q
    |||||| ||||||||| ||||||    
T  35540269 tttgggacggcccattagcccat 35540291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 18256622 - 18256549
Alignment:
Q  186 aaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttgggccgggccgggctggccca 259  Q
    |||||| | ||||||||||||| |||||| ||||||||| |||  ||||||| |||  ||||||||||| ||||    
T  18256622 aaaaatacactcgggctttttttgcccaaccccatttggtccatgcaaaagtggggttgggccgggctgaccca 18256549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 18961414 - 18961451
Alignment:
Q  244 gggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  18961414 gggccgggttggcccaccgggcttcgggccggcccatt 18961451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 18963361 - 18963324
Alignment:
Q  244 gggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  18963361 gggccgggttggcccaccgggcttcgggccggcccatt 18963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 18720358 - 18720438
Alignment:
Q  202 ttttttggcccaagcccatttgggccagacaaaagttggg-ccgggccgggctggcccaccgggctttgggccggcccatt 281  Q
    |||||| |||||||||||||||| ||| ||| |||| ||| | |||||||||||||||| | ||||| ||| || ||||||    
T  18720358 tttttttgcccaagcccatttggcccatacataagtggggtcggggccgggctggcccatcaggcttcgggacgacccatt 18720438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 24262 - 24362
Alignment:
Q  142 gcccattgacccatatttttgggccgggcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttgggccagacaaaagttggg 241  Q
    |||||||| |||||||||||||||     ||||||||||||| ||||||| |  | ||||||||||||||||||||||||||||||| |||||| |||||    
T  24262 gcccattggcccatatttttgggc-----ctaaaaaactaacgaaaaaatacatttgggcttttttggcccaagcccatttgggccatacaaaatttggg 24356  T
Q  242 ccgggc 247  Q
    ||||||    
T  24357 ccgggc 24362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 24357 - 24385
Alignment:
Q  260 ccgggctttgggccggcccattggcccat 288  Q
    |||||||||||||||||||||||||||||    
T  24357 ccgggctttgggccggcccattggcccat 24385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 3701 - 3794
Alignment:
Q  137 ggccggcccattgacccatatttttgggccgg-----gcctaaaaaactaaccaaaaaatgcgctcgggcttttttggcccaagcccatttggg 225  Q
    ||||||||||||| ||||| ||||||||||||     ||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  3701 ggccggcccattggcccatgtttttgggccggaccaggcctaaaaaactaaccaaaaaatgcactcggggtttttcggcccaagctcatttggg 3794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 22106 - 22168
Alignment:
Q  162 gggccgggcctaaaaaactaacc-aaaaaatgcgctcgggcttttttggcccaagcccatttgg 224  Q
    |||||||||||||||| ||| || ||||||| | |||||||| |||||||||||||||||||||    
T  22106 gggccgggcctaaaaa-ctagcccaaaaaatacactcgggctattttggcccaagcccatttgg 22168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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