View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_16 (Length: 363)
Name: NF1464_low_16
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_16 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 13426600 - 13426961
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattagtataaacaaa |
100 |
Q |
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| T |
13426600 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattagtataaacaaa |
13426699 |
T |
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| Q |
101 |
ttgaataattatttactact-gtttcttaagattattttgtacaaattaaaaaatatcttttattaattatataaaaatttcaaatatactcttgc-ttt |
198 |
Q |
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| T |
13426700 |
ttgaataattatttactactcatttcttaagattattttgtacaaattaaaaaatatcttttattaattatataaaaatttcaaatatactcttgctttt |
13426799 |
T |
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| Q |
199 |
tattgactcattcaattttttactctctcgtcattaaagtgagagagttataaatggagaggatcttaactctggtccaaagtaacgtagaaataaaaac |
298 |
Q |
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| T |
13426800 |
tattgactcattcaactttttactctctcgtcattaaagtgagagagttataaatggagaggatcttaactctgatccaaa-taacgtagaaat--aaac |
13426896 |
T |
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| Q |
299 |
tataattgtagtaggagttggaagcataccctggaactaatggatagatgaaattgccccattca |
363 |
Q |
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| T |
13426897 |
tataattgtagtaggagtaggaagcataccctggaactaatggatagatggaattgccccattca |
13426961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13419709 - 13419856
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattagtataaacaaa |
100 |
Q |
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| T |
13419709 |
ctttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaat---tataaacaaa |
13419805 |
T |
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| Q |
101 |
ttgaataattatttactact-gtttcttaagattattttgtacaaattaaa |
150 |
Q |
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| T |
13419806 |
ttgaacaattatttactactcatttcttaacattattttgtacaaattaaa |
13419856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 13419938 - 13420024
Alignment:
| Q |
278 |
aagtaacgtagaaataaaaactataattgtagtag---gagttggaagcataccctggaactaatggatagatgaaattgccccattca |
363 |
Q |
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| T |
13419938 |
aagtaacgtagaaataaaca--ataattgtagtagaaggagttggaagcataccctggaactaatggatagatggaatttccccattca |
13420024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13413364 - 13413439
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattt |
76 |
Q |
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| T |
13413364 |
ctttgtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtattt |
13413439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13447260 - 13447329
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct |
70 |
Q |
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| T |
13447260 |
ctttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct |
13447329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 13419854 - 13419916
Alignment:
| Q |
175 |
aaatttcaaatatactcttgctttt-attgactcattcaattttttactctctcgtcattaaa |
236 |
Q |
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| T |
13419854 |
aaatttcaaatatactcttactttttattgactcattcaactttttactctctcatcattaaa |
13419916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13385217 - 13385128
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattag |
90 |
Q |
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| T |
13385217 |
ctttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttcttatataaattag |
13385128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13389038 - 13388949
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattag |
90 |
Q |
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| T |
13389038 |
ctttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttattatataaattag |
13388949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13393445 - 13393376
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct |
70 |
Q |
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| T |
13393445 |
ctttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatgcct |
13393376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 47601531 - 47601620
Alignment:
| Q |
1 |
ctttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattag |
90 |
Q |
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| T |
47601531 |
ctttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatataaattag |
47601620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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