View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1464_low_18 (Length: 351)
Name: NF1464_low_18
Description: NF1464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1464_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33642881 - 33643231
Alignment:
| Q |
1 |
tttgttttcctaggaaaaatattttggctccacctgcaattgatactaatctccttaaaactaacaccaaaacaaaatggnnnnnnnnnntgtcacgtat |
100 |
Q |
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| T |
33642881 |
tttgttttcctaggaaaaatattttggctccacctgcaattgatactaatctccttaaaactaacaccaaaacaaaatggaaaaaaaaaatgtcacgtat |
33642980 |
T |
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| Q |
101 |
gaagcaggtagtgtgacagatcagaactaagtgttgcggtgttattaaaacatttagtcttataatataaggaccacttctacattttgcagggtgatga |
200 |
Q |
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| T |
33642981 |
gaagcaggtagtgtgacagatcagaactaagtgttgcggtgttattaaaacatttagtcttataatataaggaccacttctacattttgcagggtgatga |
33643080 |
T |
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| Q |
201 |
ttcttcaaataagtagttttgattacgtgttgttatggtcctcatgtatagtttgattattttctagcaaacacattaaacttcatttgcaattttgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643081 |
ttcttcaaataagtagttttgattacgtgttgttatggtcctcatgtatagtttgattattttctagcaaacacattaaacttcatttgcaattttgcaa |
33643180 |
T |
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| Q |
301 |
gcttctgccagaacaataatactagagaaatattgagaaaacgtgcttctg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643181 |
gcttctgccagaacaataatactagagaaatattgagaaaacgtgcttctg |
33643231 |
T |
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